• D. Altarawy, F. E. Eid, L. S. Heath, “PEAK: Integrating Curated and Noisy Prior Knowledge in Gene Regulatory Network Inference”, Journal of Computational Biology, 2016 (in print). [PDF]
  • D. Altarawy, H. Shahin, A. Mohammed and N. Meng. “LASCAD: Language-Agnostic Software Categorization and Similar Application Detection”, submitted to IEEE International Conference on Software Analysis, Evolution and Reengineering (SANER).
  • D. Aghamirzaie, K. R. Velmurugan, S. W., D. Altarawy, L. S. Heath, and R. Grene. “Expresso: a database and Web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq data.”, F1000Research, 2016.
  • S. Ha, D. Altarawy, H. Shahin, E. Dimitrova, D. Deb, R. Hilmer, J. Setubal, F. Katagiri, J. Glazebrook, B. Tyler, J. McDowell, S. Hoops, R. Laubenbacher, “PlantSimLab - A Virtual Modeling and Simulation Web Tool for Plant Biologists”, to be submitted to BMC Bioinformatics, 2016.
  • D. Altarawy, M. Ismail and S. Ghanem, "MProfiler: A Profile-Based Method for DNA Motif Discovery", In proc of Pattern Recognition in Bioinformatics, Springer, UK, 2009. [PDF]