Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_24h_versus_single_gel_24h.class.cls #double_gel_24h_versus_single_gel_24h_repos |
| Phenotype | class.cls#double_gel_24h_versus_single_gel_24h_repos |
| Upregulated in class | double_gel_24h |
| GeneSet | ANATOMICAL_STRUCTURE_FORMATION |
| Enrichment Score (ES) | 0.42390817 |
| Normalized Enrichment Score (NES) | 1.4388429 |
| Nominal p-value | 0.053497944 |
| FDR q-value | 0.30153587 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | CHRNA7 | CHRNA7 Entrez, Source | cholinergic receptor, nicotinic, alpha 7 | 107 | 0.175 | 0.0660 | Yes |
| 2 | PLG | PLG Entrez, Source | plasminogen | 229 | 0.144 | 0.1181 | Yes |
| 3 | EGF | EGF Entrez, Source | epidermal growth factor (beta-urogastrone) | 392 | 0.126 | 0.1592 | Yes |
| 4 | IL17F | IL17F Entrez, Source | interleukin 17F | 522 | 0.115 | 0.1983 | Yes |
| 5 | TNNI3 | TNNI3 Entrez, Source | troponin I type 3 (cardiac) | 617 | 0.109 | 0.2375 | Yes |
| 6 | ATPIF1 | ATPIF1 Entrez, Source | ATPase inhibitory factor 1 | 741 | 0.102 | 0.2716 | Yes |
| 7 | BTG1 | BTG1 Entrez, Source | B-cell translocation gene 1, anti-proliferative | 789 | 0.100 | 0.3104 | Yes |
| 8 | RHOB | RHOB Entrez, Source | ras homolog gene family, member B | 1350 | 0.079 | 0.3017 | Yes |
| 9 | NF1 | NF1 Entrez, Source | neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) | 1548 | 0.073 | 0.3181 | Yes |
| 10 | SPHK1 | SPHK1 Entrez, Source | sphingosine kinase 1 | 1584 | 0.073 | 0.3463 | Yes |
| 11 | SCG2 | SCG2 Entrez, Source | secretogranin II (chromogranin C) | 1843 | 0.066 | 0.3550 | Yes |
| 12 | EYA2 | EYA2 Entrez, Source | eyes absent homolog 2 (Drosophila) | 1958 | 0.063 | 0.3733 | Yes |
| 13 | NPR1 | NPR1 Entrez, Source | natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A) | 2186 | 0.058 | 0.3808 | Yes |
| 14 | NOTCH4 | NOTCH4 Entrez, Source | Notch homolog 4 (Drosophila) | 2260 | 0.056 | 0.3990 | Yes |
| 15 | TGFB2 | TGFB2 Entrez, Source | transforming growth factor, beta 2 | 2282 | 0.056 | 0.4211 | Yes |
| 16 | ACVRL1 | ACVRL1 Entrez, Source | activin A receptor type II-like 1 | 2800 | 0.046 | 0.4017 | Yes |
| 17 | EMCN | EMCN Entrez, Source | endomucin | 2882 | 0.045 | 0.4147 | Yes |
| 18 | SLIT2 | SLIT2 Entrez, Source | slit homolog 2 (Drosophila) | 3006 | 0.043 | 0.4236 | Yes |
| 19 | ANGPTL4 | ANGPTL4 Entrez, Source | angiopoietin-like 4 | 3226 | 0.040 | 0.4239 | Yes |
| 20 | NCL | NCL Entrez, Source | nucleolin | 4105 | 0.027 | 0.3693 | No |
| 21 | IL18 | IL18 Entrez, Source | interleukin 18 (interferon-gamma-inducing factor) | 4731 | 0.019 | 0.3305 | No |
| 22 | SHH | SHH Entrez, Source | sonic hedgehog homolog (Drosophila) | 5903 | 0.005 | 0.2448 | No |
| 23 | THY1 | THY1 Entrez, Source | Thy-1 cell surface antigen | 5914 | 0.005 | 0.2464 | No |
| 24 | CANX | CANX Entrez, Source | calnexin | 6028 | 0.004 | 0.2397 | No |
| 25 | PF4 | PF4 Entrez, Source | platelet factor 4 (chemokine (C-X-C motif) ligand 4) | 6577 | -0.002 | 0.1993 | No |
| 26 | NPPB | NPPB Entrez, Source | natriuretic peptide precursor B | 7667 | -0.012 | 0.1226 | No |
| 27 | SERPINF1 | SERPINF1 Entrez, Source | serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 | 7864 | -0.014 | 0.1139 | No |
| 28 | RNH1 | RNH1 Entrez, Source | ribonuclease/angiogenin inhibitor 1 | 7938 | -0.015 | 0.1147 | No |
| 29 | C1GALT1 | C1GALT1 Entrez, Source | core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 | 8422 | -0.020 | 0.0868 | No |
| 30 | PROK2 | PROK2 Entrez, Source | prokineticin 2 | 9205 | -0.028 | 0.0400 | No |
| 31 | SMAD2 | SMAD2 Entrez, Source | SMAD, mothers against DPP homolog 2 (Drosophila) | 10127 | -0.039 | -0.0129 | No |
| 32 | MYH9 | MYH9 Entrez, Source | myosin, heavy chain 9, non-muscle | 10920 | -0.050 | -0.0512 | No |
| 33 | CDH13 | CDH13 Entrez, Source | cadherin 13, H-cadherin (heart) | 11616 | -0.063 | -0.0768 | No |
| 34 | TNFSF12 | TNFSF12 Entrez, Source | tumor necrosis factor (ligand) superfamily, member 12 | 11721 | -0.065 | -0.0570 | No |
| 35 | CD9 | CD9 Entrez, Source | CD9 molecule | 11802 | -0.067 | -0.0345 | No |
| 36 | AGGF1 | AGGF1 Entrez, Source | angiogenic factor with G patch and FHA domains 1 | 12375 | -0.086 | -0.0410 | No |
| 37 | KLF4 | KLF4 Entrez, Source | Kruppel-like factor 4 (gut) | 12854 | -0.115 | -0.0281 | No |
| 38 | RUNX1 | RUNX1 Entrez, Source | runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) | 13119 | -0.153 | 0.0168 | No |
