Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_24h_versus_single_gel_24h.class.cls #double_gel_24h_versus_single_gel_24h_repos |
| Phenotype | class.cls#double_gel_24h_versus_single_gel_24h_repos |
| Upregulated in class | double_gel_24h |
| GeneSet | HDACI_COLON_TSA2HRS_UP |
| Enrichment Score (ES) | 0.4354107 |
| Normalized Enrichment Score (NES) | 1.4738239 |
| Nominal p-value | 0.044265594 |
| FDR q-value | 0.28411475 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | FOS | FOS Entrez, Source | v-fos FBJ murine osteosarcoma viral oncogene homolog | 11 | 0.331 | 0.1646 | Yes |
| 2 | SPARCL1 | SPARCL1 Entrez, Source | SPARC-like 1 (mast9, hevin) | 28 | 0.239 | 0.2826 | Yes |
| 3 | PC | PC Entrez, Source | pyruvate carboxylase | 403 | 0.125 | 0.3171 | Yes |
| 4 | SLC20A1 | SLC20A1 Entrez, Source | solute carrier family 20 (phosphate transporter), member 1 | 1065 | 0.089 | 0.3116 | Yes |
| 5 | CDKN1C | CDKN1C Entrez, Source | cyclin-dependent kinase inhibitor 1C (p57, Kip2) | 1287 | 0.081 | 0.3353 | Yes |
| 6 | PER1 | PER1 Entrez, Source | period homolog 1 (Drosophila) | 1312 | 0.080 | 0.3734 | Yes |
| 7 | RHOB | RHOB Entrez, Source | ras homolog gene family, member B | 1350 | 0.079 | 0.4100 | Yes |
| 8 | SERPINE1 | SERPINE1 Entrez, Source | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 | 1805 | 0.067 | 0.4095 | Yes |
| 9 | CDH11 | CDH11 Entrez, Source | cadherin 11, type 2, OB-cadherin (osteoblast) | 2216 | 0.057 | 0.4072 | Yes |
| 10 | SDC4 | SDC4 Entrez, Source | syndecan 4 (amphiglycan, ryudocan) | 2339 | 0.055 | 0.4253 | Yes |
| 11 | GLI3 | GLI3 Entrez, Source | GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) | 2747 | 0.047 | 0.4183 | Yes |
| 12 | ERRFI1 | ERRFI1 Entrez, Source | ERBB receptor feedback inhibitor 1 | 2825 | 0.046 | 0.4354 | Yes |
| 13 | INPP5E | INPP5E Entrez, Source | inositol polyphosphate-5-phosphatase, 72 kDa | 3245 | 0.039 | 0.4236 | No |
| 14 | KCNA1 | KCNA1 Entrez, Source | potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) | 3853 | 0.030 | 0.3931 | No |
| 15 | P4HB | P4HB Entrez, Source | procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide | 4199 | 0.026 | 0.3801 | No |
| 16 | VEGF | VEGF Entrez, Source | vascular endothelial growth factor | 4407 | 0.023 | 0.3761 | No |
| 17 | CYB5B | CYB5B Entrez, Source | cytochrome b5 type B (outer mitochondrial membrane) | 5195 | 0.014 | 0.3239 | No |
| 18 | SLC27A1 | SLC27A1 Entrez, Source | solute carrier family 27 (fatty acid transporter), member 1 | 6125 | 0.003 | 0.2558 | No |
| 19 | TSNAX | TSNAX Entrez, Source | translin-associated factor X | 6324 | 0.001 | 0.2414 | No |
| 20 | MAP1LC3B | MAP1LC3B Entrez, Source | microtubule-associated protein 1 light chain 3 beta | 6354 | 0.001 | 0.2396 | No |
| 21 | CDH1 | CDH1 Entrez, Source | cadherin 1, type 1, E-cadherin (epithelial) | 6620 | -0.002 | 0.2207 | No |
| 22 | PLAG1 | PLAG1 Entrez, Source | pleiomorphic adenoma gene 1 | 6754 | -0.003 | 0.2124 | No |
| 23 | PIP5K2C | PIP5K2C Entrez, Source | phosphatidylinositol-4-phosphate 5-kinase, type II, gamma | 7070 | -0.006 | 0.1919 | No |
| 24 | FLNB | FLNB Entrez, Source | filamin B, beta (actin binding protein 278) | 7935 | -0.015 | 0.1344 | No |
| 25 | BIRC4 | BIRC4 Entrez, Source | baculoviral IAP repeat-containing 4 | 8879 | -0.025 | 0.0759 | No |
| 26 | GNL1 | GNL1 Entrez, Source | guanine nucleotide binding protein-like 1 | 9013 | -0.026 | 0.0790 | No |
| 27 | NEU1 | NEU1 Entrez, Source | sialidase 1 (lysosomal sialidase) | 9433 | -0.031 | 0.0628 | No |
| 28 | CALCOCO1 | CALCOCO1 Entrez, Source | calcium binding and coiled-coil domain 1 | 9455 | -0.031 | 0.0766 | No |
| 29 | ZUBR1 | ZUBR1 Entrez, Source | zinc finger, UBR1 type 1 | 10038 | -0.038 | 0.0517 | No |
| 30 | ROCK1 | ROCK1 Entrez, Source | Rho-associated, coiled-coil containing protein kinase 1 | 10218 | -0.040 | 0.0580 | No |
| 31 | GNAI2 | GNAI2 Entrez, Source | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 | 10617 | -0.045 | 0.0506 | No |
| 32 | RHBDF1 | RHBDF1 Entrez, Source | rhomboid 5 homolog 1 (Drosophila) | 11765 | -0.066 | -0.0025 | No |
| 33 | GNPTG | GNPTG Entrez, Source | N-acetylglucosamine-1-phosphate transferase, gamma subunit | 12581 | -0.096 | -0.0160 | No |
| 34 | ID2 | ID2 Entrez, Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 13084 | -0.146 | 0.0194 | No |
