Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_24h_versus_single_gel_24h.class.cls #double_gel_24h_versus_single_gel_24h_repos |
| Phenotype | class.cls#double_gel_24h_versus_single_gel_24h_repos |
| Upregulated in class | single_gel_24h |
| GeneSet | PROTEIN_DNA_COMPLEX_ASSEMBLY |
| Enrichment Score (ES) | -0.5247346 |
| Normalized Enrichment Score (NES) | -1.4854337 |
| Nominal p-value | 0.062992126 |
| FDR q-value | 0.27972195 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | CHAF1B | CHAF1B Entrez, Source | chromatin assembly factor 1, subunit B (p60) | 5297 | 0.013 | -0.3744 | No |
| 2 | TBP | TBP Entrez, Source | TATA box binding protein | 5455 | 0.011 | -0.3666 | No |
| 3 | CDK9 | CDK9 Entrez, Source | cyclin-dependent kinase 9 (CDC2-related kinase) | 5864 | 0.006 | -0.3864 | No |
| 4 | PPARGC1A | PPARGC1A Entrez, Source | peroxisome proliferative activated receptor, gamma, coactivator 1, alpha | 5868 | 0.006 | -0.3759 | No |
| 5 | GTF2E1 | GTF2E1 Entrez, Source | general transcription factor IIE, polypeptide 1, alpha 56kDa | 5878 | 0.006 | -0.3661 | No |
| 6 | GTF2F2 | GTF2F2 Entrez, Source | general transcription factor IIF, polypeptide 2, 30kDa | 6378 | 0.000 | -0.4027 | No |
| 7 | GTF2F1 | GTF2F1 Entrez, Source | general transcription factor IIF, polypeptide 1, 74kDa | 8005 | -0.016 | -0.4960 | Yes |
| 8 | MED4 | MED4 Entrez, Source | mediator of RNA polymerase II transcription, subunit 4 homolog (S. cerevisiae) | 8037 | -0.016 | -0.4690 | Yes |
| 9 | HMGB1 | HMGB1 Entrez, Source | high-mobility group box 1 | 8126 | -0.017 | -0.4447 | Yes |
| 10 | THRAP3 | THRAP3 Entrez, Source | thyroid hormone receptor associated protein 3 | 8178 | -0.017 | -0.4168 | Yes |
| 11 | TAF2 | TAF2 Entrez, Source | TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa | 8418 | -0.020 | -0.3984 | Yes |
| 12 | NAP1L4 | NAP1L4 Entrez, Source | nucleosome assembly protein 1-like 4 | 9741 | -0.034 | -0.4347 | Yes |
| 13 | CDK7 | CDK7 Entrez, Source | cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase) | 10156 | -0.039 | -0.3945 | Yes |
| 14 | GTF2I | GTF2I Entrez, Source | general transcription factor II, i | 10483 | -0.043 | -0.3401 | Yes |
| 15 | NCOA6 | NCOA6 Entrez, Source | nuclear receptor coactivator 6 | 10571 | -0.044 | -0.2655 | Yes |
| 16 | NAP1L3 | NAP1L3 Entrez, Source | nucleosome assembly protein 1-like 3 | 11738 | -0.066 | -0.2330 | Yes |
| 17 | NAP1L1 | NAP1L1 Entrez, Source | nucleosome assembly protein 1-like 1 | 11929 | -0.071 | -0.1180 | Yes |
| 18 | NAP1L2 | NAP1L2 Entrez, Source | nucleosome assembly protein 1-like 2 | 12911 | -0.122 | 0.0323 | Yes |
