Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_24h_versus_single_gel_24h.class.cls #double_gel_24h_versus_single_gel_24h_repos |
| Phenotype | class.cls#double_gel_24h_versus_single_gel_24h_repos |
| Upregulated in class | double_gel_24h |
| GeneSet | V$TAXCREB_01 |
| Enrichment Score (ES) | 0.4021591 |
| Normalized Enrichment Score (NES) | 1.492017 |
| Nominal p-value | 0.026974952 |
| FDR q-value | 0.27750632 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | FOS | FOS Entrez, Source | v-fos FBJ murine osteosarcoma viral oncogene homolog | 11 | 0.331 | 0.0971 | Yes |
| 2 | G6PC | G6PC Entrez, Source | glucose-6-phosphatase, catalytic subunit | 14 | 0.295 | 0.1842 | Yes |
| 3 | NR2F1 | NR2F1 Entrez, Source | nuclear receptor subfamily 2, group F, member 1 | 41 | 0.224 | 0.2485 | Yes |
| 4 | GPM6B | GPM6B Entrez, Source | glycoprotein M6B | 130 | 0.167 | 0.2913 | Yes |
| 5 | VGF | VGF Entrez, Source | VGF nerve growth factor inducible | 619 | 0.109 | 0.2869 | Yes |
| 6 | SIX3 | SIX3 Entrez, Source | sine oculis homeobox homolog 3 (Drosophila) | 778 | 0.100 | 0.3047 | Yes |
| 7 | DLX5 | DLX5 Entrez, Source | distal-less homeobox 5 | 909 | 0.095 | 0.3229 | Yes |
| 8 | VAMP2 | VAMP2 Entrez, Source | vesicle-associated membrane protein 2 (synaptobrevin 2) | 1269 | 0.081 | 0.3200 | Yes |
| 9 | CEBPB | CEBPB Entrez, Source | CCAAT/enhancer binding protein (C/EBP), beta | 1304 | 0.080 | 0.3411 | Yes |
| 10 | SOX10 | SOX10 Entrez, Source | SRY (sex determining region Y)-box 10 | 1485 | 0.075 | 0.3497 | Yes |
| 11 | TRIM39 | TRIM39 Entrez, Source | tripartite motif-containing 39 | 1588 | 0.073 | 0.3635 | Yes |
| 12 | CCND2 | CCND2 Entrez, Source | cyclin D2 | 1596 | 0.073 | 0.3844 | Yes |
| 13 | MAP1LC3A | MAP1LC3A Entrez, Source | microtubule-associated protein 1 light chain 3 alpha | 2046 | 0.061 | 0.3687 | Yes |
| 14 | FGF14 | FGF14 Entrez, Source | fibroblast growth factor 14 | 2352 | 0.055 | 0.3618 | Yes |
| 15 | NR4A3 | NR4A3 Entrez, Source | nuclear receptor subfamily 4, group A, member 3 | 2506 | 0.051 | 0.3655 | Yes |
| 16 | PTPRU | PTPRU Entrez, Source | protein tyrosine phosphatase, receptor type, U | 2507 | 0.051 | 0.3807 | Yes |
| 17 | GATA1 | GATA1 Entrez, Source | GATA binding protein 1 (globin transcription factor 1) | 2631 | 0.049 | 0.3860 | Yes |
| 18 | LMO4 | LMO4 Entrez, Source | LIM domain only 4 | 2834 | 0.046 | 0.3843 | Yes |
| 19 | RING1 | RING1 Entrez, Source | ring finger protein 1 | 2938 | 0.044 | 0.3895 | Yes |
| 20 | EIF4A2 | EIF4A2 Entrez, Source | eukaryotic translation initiation factor 4A, isoform 2 | 2944 | 0.044 | 0.4022 | Yes |
| 21 | JUND | JUND Entrez, Source | jun D proto-oncogene | 4321 | 0.024 | 0.3058 | No |
| 22 | VEGF | VEGF Entrez, Source | vascular endothelial growth factor | 4407 | 0.023 | 0.3063 | No |
| 23 | ATF1 | ATF1 Entrez, Source | activating transcription factor 1 | 5103 | 0.015 | 0.2583 | No |
| 24 | SNF1LK | SNF1LK Entrez, Source | SNF1-like kinase | 5469 | 0.010 | 0.2340 | No |
| 25 | CAMK2D | CAMK2D Entrez, Source | calcium/calmodulin-dependent protein kinase (CaM kinase) II delta | 5913 | 0.005 | 0.2022 | No |
| 26 | RPS27 | RPS27 Entrez, Source | ribosomal protein S27 (metallopanstimulin 1) | 6230 | 0.002 | 0.1790 | No |
| 27 | PAFAH1B1 | PAFAH1B1 Entrez, Source | platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa | 6305 | 0.001 | 0.1738 | No |
| 28 | CTCF | CTCF Entrez, Source | CCCTC-binding factor (zinc finger protein) | 6595 | -0.002 | 0.1526 | No |
| 29 | MESDC1 | MESDC1 Entrez, Source | mesoderm development candidate 1 | 6628 | -0.002 | 0.1509 | No |
| 30 | SLC25A5 | SLC25A5 Entrez, Source | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 | 6656 | -0.003 | 0.1496 | No |
| 31 | PNRC1 | PNRC1 Entrez, Source | proline-rich nuclear receptor coactivator 1 | 7030 | -0.006 | 0.1233 | No |
| 32 | GTF2A1 | GTF2A1 Entrez, Source | general transcription factor IIA, 1, 19/37kDa | 7171 | -0.007 | 0.1149 | No |
| 33 | DUSP1 | DUSP1 Entrez, Source | dual specificity phosphatase 1 | 7336 | -0.009 | 0.1052 | No |
| 34 | SHANK2 | SHANK2 Entrez, Source | SH3 and multiple ankyrin repeat domains 2 | 7383 | -0.009 | 0.1045 | No |
| 35 | ARIH1 | ARIH1 Entrez, Source | ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) | 7627 | -0.012 | 0.0897 | No |
| 36 | GSPT1 | GSPT1 Entrez, Source | G1 to S phase transition 1 | 7697 | -0.012 | 0.0881 | No |
| 37 | NINJ1 | NINJ1 Entrez, Source | ninjurin 1 | 7747 | -0.013 | 0.0883 | No |
| 38 | CDC42 | CDC42 Entrez, Source | cell division cycle 42 (GTP binding protein, 25kDa) | 7869 | -0.014 | 0.0834 | No |
| 39 | PHF12 | PHF12 Entrez, Source | PHD finger protein 12 | 8057 | -0.016 | 0.0741 | No |
| 40 | PPP2CB | PPP2CB Entrez, Source | protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform | 8641 | -0.022 | 0.0368 | No |
| 41 | DLST | DLST Entrez, Source | dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) | 9003 | -0.026 | 0.0173 | No |
| 42 | CDKN1B | CDKN1B Entrez, Source | cyclin-dependent kinase inhibitor 1B (p27, Kip1) | 9056 | -0.027 | 0.0213 | No |
| 43 | APPBP2 | APPBP2 Entrez, Source | amyloid beta precursor protein (cytoplasmic tail) binding protein 2 | 9965 | -0.037 | -0.0362 | No |
| 44 | PLCB3 | PLCB3 Entrez, Source | phospholipase C, beta 3 (phosphatidylinositol-specific) | 10097 | -0.038 | -0.0347 | No |
| 45 | CLSTN3 | CLSTN3 Entrez, Source | calsyntenin 3 | 10833 | -0.049 | -0.0757 | No |
| 46 | NTRK2 | NTRK2 Entrez, Source | neurotrophic tyrosine kinase, receptor, type 2 | 10909 | -0.050 | -0.0666 | No |
| 47 | USP14 | USP14 Entrez, Source | ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) | 11235 | -0.056 | -0.0746 | No |
| 48 | TAF11 | TAF11 Entrez, Source | TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa | 11247 | -0.056 | -0.0589 | No |
| 49 | C11ORF11 | C11ORF11 Entrez, Source | chromosome 11 open reading frame 11 | 11255 | -0.056 | -0.0429 | No |
| 50 | BRAF | BRAF Entrez, Source | v-raf murine sarcoma viral oncogene homolog B1 | 11372 | -0.058 | -0.0344 | No |
| 51 | MARCKS | MARCKS Entrez, Source | myristoylated alanine-rich protein kinase C substrate | 11501 | -0.060 | -0.0262 | No |
| 52 | CALM2 | CALM2 Entrez, Source | calmodulin 2 (phosphorylase kinase, delta) | 11629 | -0.063 | -0.0171 | No |
| 53 | SCAMP5 | SCAMP5 Entrez, Source | secretory carrier membrane protein 5 | 12035 | -0.074 | -0.0258 | No |
| 54 | ARRB2 | ARRB2 Entrez, Source | arrestin, beta 2 | 12491 | -0.091 | -0.0332 | No |
| 55 | PAK1 | PAK1 Entrez, Source | p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast) | 12764 | -0.108 | -0.0217 | No |
| 56 | TAGLN2 | TAGLN2 Entrez, Source | transgelin 2 | 12779 | -0.109 | 0.0094 | No |
| 57 | DLAT | DLAT Entrez, Source | dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) | 12811 | -0.111 | 0.0400 | No |
