Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_48h_versus_single_gel_48h.class.cls
#double_gel_48h_versus_single_gel_48h_repos
Phenotypeclass.cls#double_gel_48h_versus_single_gel_48h_repos
Upregulated in classdouble_gel_48h
GeneSetCARBOXYLIC_ACID_METABOLIC_PROCESS
Enrichment Score (ES)0.51849633
Normalized Enrichment Score (NES)2.2144082
Nominal p-value0.0
FDR q-value4.2122067E-4
FWER p-Value0.0080
Table: GSEA Results Summary



Fig 1: Enrichment plot: CARBOXYLIC_ACID_METABOLIC_PROCESS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SLC27A5SLC27A5
Entrez,  Source
solute carrier family 27 (fatty acid transporter), member 5120.3950.0363Yes
2FTCDFTCD
Entrez,  Source
formiminotransferase cyclodeaminase270.3360.0668Yes
3BBOX1BBOX1
Entrez,  Source
butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1370.3030.0946Yes
4CDO1CDO1
Entrez,  Source
cysteine dioxygenase, type I540.2790.1196Yes
5SC4MOLSC4MOL
Entrez,  Source
sterol-C4-methyl oxidase-like900.2360.1391Yes
6HACL1HACL1
Entrez,  Source
2-hydroxyacyl-CoA lyase 1940.2290.1604Yes
7GLYATGLYAT
Entrez,  Source
glycine-N-acyltransferase1020.2250.1810Yes
8ARG1ARG1
Entrez,  Source
arginase, liver1170.2090.1996Yes
9ACLYACLY
Entrez,  Source
ATP citrate lyase1270.2020.2179Yes
10PPARAPPARA
Entrez,  Source
peroxisome proliferative activated receptor, alpha1550.1900.2338Yes
11GOT1GOT1
Entrez,  Source
glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)1970.1730.2470Yes
12GCKGCK
Entrez,  Source
glucokinase (hexokinase 4, maturity onset diabetes of the young 2)2180.1700.2614Yes
13ASLASL
Entrez,  Source
argininosuccinate lyase2730.1540.2718Yes
14ALDH6A1ALDH6A1
Entrez,  Source
aldehyde dehydrogenase 6 family, member A13140.1480.2827Yes
15MAT1AMAT1A
Entrez,  Source
methionine adenosyltransferase I, alpha3230.1460.2958Yes
16FADS2FADS2
Entrez,  Source
fatty acid desaturase 23620.1400.3061Yes
17HDCHDC
Entrez,  Source
histidine decarboxylase3830.1380.3176Yes
18NR1H4NR1H4
Entrez,  Source
nuclear receptor subfamily 1, group H, member 43900.1370.3300Yes
19ACOX2ACOX2
Entrez,  Source
acyl-Coenzyme A oxidase 2, branched chain4420.1300.3384Yes
20HGDHGD
Entrez,  Source
homogentisate 1,2-dioxygenase (homogentisate oxidase)4570.1290.3495Yes
21CPT1ACPT1A
Entrez,  Source
carnitine palmitoyltransferase 1A (liver)4690.1280.3607Yes
22PFKFB1PFKFB1
Entrez,  Source
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 14760.1270.3722Yes
23AS3MTAS3MT
Entrez,  Source
arsenic (+3 oxidation state) methyltransferase4800.1270.3839Yes
24FAHFAH
Entrez,  Source
fumarylacetoacetate hydrolase (fumarylacetoacetase)4890.1260.3952Yes
25SLC7A2SLC7A2
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 24940.1250.4066Yes
26ALDH1L1ALDH1L1
Entrez,  Source
aldehyde dehydrogenase 1 family, member L15020.1250.4178Yes
27ACADVLACADVL
Entrez,  Source
acyl-Coenzyme A dehydrogenase, very long chain5260.1230.4277Yes
28AGXTAGXT
Entrez,  Source
alanine-glyoxylate aminotransferase (oxalosis I; hyperoxaluria I; glycolicaciduria; serine-pyruvate aminotransferase)5910.1180.4340Yes
29SLC25A10SLC25A10
Entrez,  Source
solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 107900.1070.4291Yes
30BCKDKBCKDK
Entrez,  Source
branched chain ketoacid dehydrogenase kinase8660.1040.4332Yes
31PTSPTS
Entrez,  Source
6-pyruvoyltetrahydropterin synthase8770.1040.4422Yes
32GAMTGAMT
Entrez,  Source
guanidinoacetate N-methyltransferase9100.1020.4493Yes
33SCLYSCLY
Entrez,  Source
selenocysteine lyase10560.0950.4473Yes
34CD74CD74
Entrez,  Source
CD74 molecule, major histocompatibility complex, class II invariant chain10970.0930.4531Yes
35SLC25A15SLC25A15
Entrez,  Source
solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 1511840.0900.4550Yes
36GAD2GAD2
Entrez,  Source
glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)12120.0890.4614Yes
37GCLCGCLC
Entrez,  Source
glutamate-cysteine ligase, catalytic subunit12370.0880.4679Yes
38MSRAMSRA
Entrez,  Source
methionine sulfoxide reductase A14040.0820.4630Yes
39GNEGNE
Entrez,  Source
glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase14410.0810.4680Yes
40ME1ME1
Entrez,  Source
malic enzyme 1, NADP(+)-dependent, cytosolic14930.0800.4716Yes
41PAHPAH
Entrez,  Source
phenylalanine hydroxylase15130.0790.4776Yes
42ECHS1ECHS1
Entrez,  Source
enoyl Coenzyme A hydratase, short chain, 1, mitochondrial15280.0790.4839Yes
43UGDHUGDH
Entrez,  Source
UDP-glucose dehydrogenase15620.0780.4887Yes
44SLC7A8SLC7A8
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 815840.0770.4944Yes
45BAATBAAT
Entrez,  Source
bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase)16250.0770.4986Yes
46NANPNANP
Entrez,  Source
N-acetylneuraminic acid phosphatase16680.0750.5025Yes
47ACN9ACN9
Entrez,  Source
ACN9 homolog (S. cerevisiae)17430.0730.5038Yes
48PTGESPTGES
Entrez,  Source
prostaglandin E synthase17970.0720.5065Yes
49YARSYARS
Entrez,  Source
tyrosyl-tRNA synthetase19070.0700.5049Yes
50FADS1FADS1
Entrez,  Source
fatty acid desaturase 119320.0700.5096Yes
51QDPRQDPR
Entrez,  Source
quinoid dihydropteridine reductase19670.0690.5135Yes
52AKR1D1AKR1D1
Entrez,  Source
aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)20980.0660.5099Yes
53FAAHFAAH
Entrez,  Source
fatty acid amide hydrolase21160.0660.5147Yes
54BCKDHABCKDHA
Entrez,  Source
branched chain keto acid dehydrogenase E1, alpha polypeptide22520.0630.5104Yes
55CYP4F2CYP4F2
Entrez,  Source
cytochrome P450, family 4, subfamily F, polypeptide 222910.0620.5134Yes
56MLYCDMLYCD
Entrez,  Source
malonyl-CoA decarboxylase23020.0620.5185Yes
57SLC7A5SLC7A5
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 523960.0600.5171No
58PPARDPPARD
Entrez,  Source
peroxisome proliferative activated receptor, delta25580.0580.5103No
59ASRGL1ASRGL1
Entrez,  Source
asparaginase like 128610.0520.4924No
60TNFRSF1ATNFRSF1A
Entrez,  Source
tumor necrosis factor receptor superfamily, member 1A29940.0500.4871No
61PTGS1PTGS1
Entrez,  Source
prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)30070.0500.4909No
62AARSAARS
Entrez,  Source
alanyl-tRNA synthetase31230.0480.4867No
63GCSHGCSH
Entrez,  Source
glycine cleavage system protein H (aminomethyl carrier)31260.0480.4911No
64ACOT2ACOT2
Entrez,  Source
acyl-CoA thioesterase 234350.0440.4719No
65ACADSBACADSB
Entrez,  Source
acyl-Coenzyme A dehydrogenase, short/branched chain35260.0430.4691No
66AMTAMT
Entrez,  Source
aminomethyltransferase35520.0420.4712No
67GLS2GLS2
Entrez,  Source
glutaminase 2 (liver, mitochondrial)35550.0420.4750No
68ATF4ATF4
Entrez,  Source
activating transcription factor 4 (tax-responsive enhancer element B67)35790.0420.4772No
69GBA2GBA2
Entrez,  Source
glucosidase, beta (bile acid) 236300.0410.4773No
70SDSSDS
Entrez,  Source
serine dehydratase36840.0410.4771No
71GNPATGNPAT
Entrez,  Source
glyceronephosphate O-acyltransferase37830.0390.4734No
72ACO2ACO2
Entrez,  Source
aconitase 2, mitochondrial37990.0390.4760No
73BCKDHBBCKDHB
Entrez,  Source
branched chain keto acid dehydrogenase E1, beta polypeptide (maple syrup urine disease)39120.0380.4711No
74HPGDHPGD
Entrez,  Source
hydroxyprostaglandin dehydrogenase 15-(NAD)39150.0380.4745No
75IDH1IDH1
Entrez,  Source
isocitrate dehydrogenase 1 (NADP+), soluble39530.0370.4751No
76ALDH5A1ALDH5A1
Entrez,  Source
aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase)41140.0350.4663No
77GATMGATM
Entrez,  Source
glycine amidinotransferase (L-arginine:glycine amidinotransferase)42290.0330.4608No
78PECIPECI
Entrez,  Source
peroxisomal D3,D2-enoyl-CoA isomerase42650.0330.4613No
79HADHBHADHB
Entrez,  Source
hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit43130.0320.4608No
80IGF1IGF1
Entrez,  Source
insulin-like growth factor 1 (somatomedin C)43450.0320.4614No
81SLC7A7SLC7A7
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 746000.0290.4449No
82ASPAASPA
Entrez,  Source
aspartoacylase (Canavan disease)46450.0280.4442No
83ACO1ACO1
Entrez,  Source
aconitase 1, soluble46550.0280.4462No
84ACOX3ACOX3
Entrez,  Source
acyl-Coenzyme A oxidase 3, pristanoyl47320.0270.4430No
85INDOINDO
Entrez,  Source
indoleamine-pyrrole 2,3 dioxygenase47510.0270.4441No
86GSSGSS
Entrez,  Source
glutathione synthetase49630.0240.4305No
87HAO2HAO2
Entrez,  Source
hydroxyacid oxidase 2 (long chain)49910.0240.4307No
88GAD1GAD1
Entrez,  Source
glutamate decarboxylase 1 (brain, 67kDa)54550.0190.3974No
89GGT1GGT1
Entrez,  Source
gamma-glutamyltransferase 156380.0170.3852No
90NFS1NFS1
Entrez,  Source
NFS1 nitrogen fixation 1 (S. cerevisiae)56740.0160.3841No
91ACADMACADM
Entrez,  Source
acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain58450.0140.3726No
92GCLMGCLM
Entrez,  Source
glutamate-cysteine ligase, modifier subunit60390.0120.3591No
93IDH3BIDH3B
Entrez,  Source
isocitrate dehydrogenase 3 (NAD+) beta60920.0120.3563No
94DARSDARS
Entrez,  Source
aspartyl-tRNA synthetase63550.0090.3373No
95GGTLA1GGTLA1
Entrez,  Source
gamma-glutamyltransferase-like activity 163760.0090.3366No
96ADI1ADI1
Entrez,  Source
acireductone dioxygenase 164290.0080.3335No
97PPARGC1APPARGC1A
Entrez,  Source
peroxisome proliferative activated receptor, gamma, coactivator 1, alpha65490.0070.3251No
98GOT2GOT2
Entrez,  Source
glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)68120.0040.3057No
99KARSKARS
Entrez,  Source
lysyl-tRNA synthetase68850.0030.3005No
100PTGDSPTGDS
Entrez,  Source
prostaglandin D2 synthase 21kDa (brain)69850.0020.2932No
101ADIPOR2ADIPOR2
Entrez,  Source
adiponectin receptor 270840.0010.2859No
102SLC3A1SLC3A1
Entrez,  Source
17608-0.0050.2468No
103ACOT12ACOT12
Entrez,  Source
acyl-CoA thioesterase 127714-0.0060.2394No
104AGPAT1AGPAT1
Entrez,  Source
1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)7919-0.0090.2248No
105ACADSACADS
Entrez,  Source
acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain7949-0.0090.2234No
106WARSWARS
Entrez,  Source
tryptophanyl-tRNA synthetase7995-0.0090.2209No
107ECH1ECH1
Entrez,  Source
enoyl Coenzyme A hydratase 1, peroxisomal8150-0.0110.2103No
108HPDHPD
Entrez,  Source
4-hydroxyphenylpyruvate dioxygenase8248-0.0120.2041No
109GLUD1GLUD1
Entrez,  Source
glutamate dehydrogenase 18367-0.0140.1965No
110HSD3B7HSD3B7
Entrez,  Source
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 78545-0.0160.1846No
111SCYE1SCYE1
Entrez,  Source
small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating)8723-0.0180.1729No
112ARPP-19ARPP-19
Entrez,  Source
-8985-0.0220.1552No
113CPT1BCPT1B
Entrez,  Source
carnitine palmitoyltransferase 1B (muscle)9047-0.0230.1527No
114FARS2FARS2
Entrez,  Source
phenylalanine-tRNA synthetase 2 (mitochondrial)9474-0.0290.1231No
115SLC7A9SLC7A9
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 99724-0.0320.1073No
116MCCC2MCCC2
Entrez,  Source
methylcrotonoyl-Coenzyme A carboxylase 2 (beta)9753-0.0330.1083No
117CYP7B1CYP7B1
Entrez,  Source
cytochrome P450, family 7, subfamily B, polypeptide 19803-0.0330.1077No
118LTA4HLTA4H
Entrez,  Source
leukotriene A4 hydrolase9958-0.0360.0994No
119ABCD2ABCD2
Entrez,  Source
ATP-binding cassette, sub-family D (ALD), member 210245-0.0410.0816No
120ADIPOR1ADIPOR1
Entrez,  Source
adiponectin receptor 110701-0.0490.0518No
121MIFMIF
Entrez,  Source
macrophage migration inhibitory factor (glycosylation-inhibiting factor)11278-0.0620.0140No
122DEGS1DEGS1
Entrez,  Source
degenerative spermatocyte homolog 1, lipid desaturase (Drosophila)11526-0.0690.0018No
123PLOD1PLOD1
Entrez,  Source
procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 112413-0.112-0.0547No
124LYPLA3LYPLA3
Entrez,  Source
lysophospholipase 3 (lysosomal phospholipase A2)12539-0.121-0.0528No
125CROTCROT
Entrez,  Source
carnitine O-octanoyltransferase12676-0.132-0.0507No
126BRCA1BRCA1
Entrez,  Source
breast cancer 1, early onset12787-0.146-0.0454No
127SLC6A6SLC6A6
Entrez,  Source
solute carrier family 6 (neurotransmitter transporter, taurine), member 612793-0.147-0.0319No
128DDAH1DDAH1
Entrez,  Source
dimethylarginine dimethylaminohydrolase 112847-0.155-0.0214No
129DDAH2DDAH2
Entrez,  Source
dimethylarginine dimethylaminohydrolase 212970-0.181-0.0136No
130SMSSMS
Entrez,  Source
spermine synthase13073-0.219-0.0007No
131BCAT1BCAT1
Entrez,  Source
branched chain aminotransferase 1, cytosolic13084-0.2240.0195No
Table: GSEA details [plain text format]



Fig 2: CARBOXYLIC_ACID_METABOLIC_PROCESS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CARBOXYLIC_ACID_METABOLIC_PROCESS: Random ES distribution   
Gene set null distribution of ES for CARBOXYLIC_ACID_METABOLIC_PROCESS