Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_48h_versus_single_gel_48h.class.cls #double_gel_48h_versus_single_gel_48h_repos |
| Phenotype | class.cls#double_gel_48h_versus_single_gel_48h_repos |
| Upregulated in class | single_gel_48h |
| GeneSet | GILDEA_BLADDER_UP |
| Enrichment Score (ES) | -0.65577656 |
| Normalized Enrichment Score (NES) | -1.7422261 |
| Nominal p-value | 0.0053956835 |
| FDR q-value | 0.051580526 |
| FWER p-Value | 0.999 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | IGFBP4 | IGFBP4 Entrez, Source | insulin-like growth factor binding protein 4 | 406 | 0.135 | 0.0331 | No |
| 2 | DUSP4 | DUSP4 Entrez, Source | dual specificity phosphatase 4 | 1225 | 0.089 | 0.0136 | No |
| 3 | SPARC | SPARC Entrez, Source | secreted protein, acidic, cysteine-rich (osteonectin) | 2588 | 0.057 | -0.0617 | No |
| 4 | IGFBP5 | IGFBP5 Entrez, Source | insulin-like growth factor binding protein 5 | 2629 | 0.056 | -0.0380 | No |
| 5 | PRG1 | PRG1 Entrez, Source | proteoglycan 1, secretory granule | 3518 | 0.043 | -0.0845 | No |
| 6 | TACSTD2 | TACSTD2 Entrez, Source | tumor-associated calcium signal transducer 2 | 5622 | 0.017 | -0.2344 | No |
| 7 | HNMT | HNMT Entrez, Source | histamine N-methyltransferase | 6010 | 0.013 | -0.2574 | No |
| 8 | ARHGDIB | ARHGDIB Entrez, Source | Rho GDP dissociation inhibitor (GDI) beta | 6080 | 0.012 | -0.2569 | No |
| 9 | RAC2 | RAC2 Entrez, Source | ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) | 6150 | 0.011 | -0.2567 | No |
| 10 | FN1 | FN1 Entrez, Source | fibronectin 1 | 7215 | -0.000 | -0.3364 | No |
| 11 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 7962 | -0.009 | -0.3881 | No |
| 12 | GLIPR1 | GLIPR1 Entrez, Source | GLI pathogenesis-related 1 (glioma) | 8223 | -0.012 | -0.4019 | No |
| 13 | BST2 | BST2 Entrez, Source | bone marrow stromal cell antigen 2 | 9025 | -0.022 | -0.4515 | No |
| 14 | SMARCA4 | SMARCA4 Entrez, Source | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 | 9879 | -0.034 | -0.4993 | No |
| 15 | PRKCDBP | PRKCDBP Entrez, Source | protein kinase C, delta binding protein | 10837 | -0.052 | -0.5463 | No |
| 16 | VAMP5 | VAMP5 Entrez, Source | vesicle-associated membrane protein 5 (myobrevin) | 12296 | -0.103 | -0.6071 | Yes |
| 17 | PGCP | PGCP Entrez, Source | - | 12492 | -0.117 | -0.5665 | Yes |
| 18 | TIMP3 | TIMP3 Entrez, Source | TIMP metallopeptidase inhibitor 3 (Sorsby fundus dystrophy, pseudoinflammatory) | 13175 | -0.275 | -0.4877 | Yes |
| 19 | TAGLN | TAGLN Entrez, Source | transgelin | 13341 | -1.059 | 0.0001 | Yes |
