Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_48h_versus_single_gel_48h.class.cls #double_gel_48h_versus_single_gel_48h_repos |
Phenotype | class.cls#double_gel_48h_versus_single_gel_48h_repos |
Upregulated in class | single_gel_48h |
GeneSet | HADDAD_HPCLYMPHO_ENRICHED |
Enrichment Score (ES) | -0.46704772 |
Normalized Enrichment Score (NES) | -1.7701905 |
Nominal p-value | 0.0 |
FDR q-value | 0.047190413 |
FWER p-Value | 0.994 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | GADD45G | GADD45G Entrez,  Source | growth arrest and DNA-damage-inducible, gamma | 160 | 0.189 | 0.0065 | No |
2 | HIST1H1E | HIST1H1E Entrez,  Source | histone cluster 1, H1e | 288 | 0.151 | 0.0117 | No |
3 | P2RY14 | P2RY14 Entrez,  Source | purinergic receptor P2Y, G-protein coupled, 14 | 519 | 0.124 | 0.0064 | No |
4 | HS3ST1 | HS3ST1 Entrez,  Source | heparan sulfate (glucosamine) 3-O-sulfotransferase 1 | 640 | 0.116 | 0.0087 | No |
5 | SCN3A | SCN3A Entrez,  Source | sodium channel, voltage-gated, type III, alpha | 691 | 0.112 | 0.0159 | No |
6 | EFHA1 | EFHA1 Entrez,  Source | EF-hand domain family, member A1 | 783 | 0.108 | 0.0196 | No |
7 | POU4F1 | POU4F1 Entrez,  Source | POU domain, class 4, transcription factor 1 | 968 | 0.099 | 0.0153 | No |
8 | ITPR1 | ITPR1 Entrez,  Source | inositol 1,4,5-triphosphate receptor, type 1 | 1000 | 0.098 | 0.0226 | No |
9 | GH1 | GH1 Entrez,  Source | growth hormone 1 | 1265 | 0.087 | 0.0111 | No |
10 | CD79B | CD79B Entrez,  Source | CD79b molecule, immunoglobulin-associated beta | 1390 | 0.083 | 0.0099 | No |
11 | AK1 | AK1 Entrez,  Source | adenylate kinase 1 | 1604 | 0.077 | 0.0013 | No |
12 | UBE2D2 | UBE2D2 Entrez,  Source | ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) | 1670 | 0.075 | 0.0038 | No |
13 | BLK | BLK Entrez,  Source | B lymphoid tyrosine kinase | 1772 | 0.073 | 0.0033 | No |
14 | KCNJ2 | KCNJ2 Entrez,  Source | potassium inwardly-rectifying channel, subfamily J, member 2 | 1778 | 0.073 | 0.0100 | No |
15 | RHOB | RHOB Entrez,  Source | ras homolog gene family, member B | 1840 | 0.071 | 0.0124 | No |
16 | FOXO1A | FOXO1A Entrez,  Source | forkhead box O1A (rhabdomyosarcoma) | 1951 | 0.069 | 0.0108 | No |
17 | HIST1H2BH | HIST1H2BH Entrez,  Source | histone cluster 1, H2bh | 1973 | 0.069 | 0.0160 | No |
18 | RIMS3 | RIMS3 Entrez,  Source | regulating synaptic membrane exocytosis 3 | 2026 | 0.067 | 0.0187 | No |
19 | TOB1 | TOB1 Entrez,  Source | transducer of ERBB2, 1 | 2158 | 0.065 | 0.0151 | No |
20 | ELL3 | ELL3 Entrez,  Source | elongation factor RNA polymerase II-like 3 | 2237 | 0.063 | 0.0154 | No |
21 | PPM1A | PPM1A Entrez,  Source | protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform | 2267 | 0.063 | 0.0194 | No |
22 | ZBTB10 | ZBTB10 Entrez,  Source | zinc finger and BTB domain containing 10 | 2319 | 0.062 | 0.0216 | No |
23 | QRSL1 | QRSL1 Entrez,  Source | glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 | 2371 | 0.061 | 0.0237 | No |
24 | MSX1 | MSX1 Entrez,  Source | msh homeobox homolog 1 (Drosophila) | 2398 | 0.060 | 0.0276 | No |
25 | BTG1 | BTG1 Entrez,  Source | B-cell translocation gene 1, anti-proliferative | 2418 | 0.060 | 0.0320 | No |
26 | CD9 | CD9 Entrez,  Source | CD9 molecule | 2527 | 0.058 | 0.0296 | No |
27 | MGAT5 | MGAT5 Entrez,  Source | mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase | 3267 | 0.046 | -0.0218 | No |
28 | GPM6B | GPM6B Entrez,  Source | glycoprotein M6B | 3271 | 0.046 | -0.0175 | No |
29 | SOD2 | SOD2 Entrez,  Source | superoxide dismutase 2, mitochondrial | 3354 | 0.045 | -0.0193 | No |
30 | NELF | NELF Entrez,  Source | nasal embryonic LHRH factor | 3417 | 0.044 | -0.0196 | No |
31 | SEC22B | SEC22B Entrez,  Source | SEC22 vesicle trafficking protein homolog B (S. cerevisiae) | 3553 | 0.042 | -0.0257 | No |
32 | BLNK | BLNK Entrez,  Source | B-cell linker | 3887 | 0.038 | -0.0472 | No |
33 | BTG2 | BTG2 Entrez,  Source | BTG family, member 2 | 3927 | 0.037 | -0.0464 | No |
34 | ALDH5A1 | ALDH5A1 Entrez,  Source | aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase) | 4114 | 0.035 | -0.0571 | No |
35 | PCNA | PCNA Entrez,  Source | proliferating cell nuclear antigen | 4258 | 0.033 | -0.0647 | No |
36 | CACNB3 | CACNB3 Entrez,  Source | calcium channel, voltage-dependent, beta 3 subunit | 4260 | 0.033 | -0.0615 | No |
37 | GNG7 | GNG7 Entrez,  Source | guanine nucleotide binding protein (G protein), gamma 7 | 4266 | 0.033 | -0.0586 | No |
38 | COL5A1 | COL5A1 Entrez,  Source | collagen, type V, alpha 1 | 4268 | 0.033 | -0.0555 | No |
39 | LEF1 | LEF1 Entrez,  Source | lymphoid enhancer-binding factor 1 | 4464 | 0.030 | -0.0673 | No |
40 | CIITA | CIITA Entrez,  Source | class II, major histocompatibility complex, transactivator | 4792 | 0.026 | -0.0894 | No |
41 | ALOX5 | ALOX5 Entrez,  Source | arachidonate 5-lipoxygenase | 4818 | 0.026 | -0.0887 | No |
42 | VAMP1 | VAMP1 Entrez,  Source | vesicle-associated membrane protein 1 (synaptobrevin 1) | 4878 | 0.025 | -0.0907 | No |
43 | LAPTM5 | LAPTM5 Entrez,  Source | lysosomal associated multispanning membrane protein 5 | 4925 | 0.025 | -0.0918 | No |
44 | RASGRP1 | RASGRP1 Entrez,  Source | RAS guanyl releasing protein 1 (calcium and DAG-regulated) | 4950 | 0.024 | -0.0912 | No |
45 | CDC2L5 | CDC2L5 Entrez,  Source | cell division cycle 2-like 5 (cholinesterase-related cell division controller) | 5085 | 0.023 | -0.0991 | No |
46 | WFS1 | WFS1 Entrez,  Source | Wolfram syndrome 1 (wolframin) | 5365 | 0.020 | -0.1183 | No |
47 | PPM1B | PPM1B Entrez,  Source | protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform | 6165 | 0.011 | -0.1776 | No |
48 | RPL35A | RPL35A Entrez,  Source | ribosomal protein L35a | 6180 | 0.011 | -0.1775 | No |
49 | NID2 | NID2 Entrez,  Source | nidogen 2 (osteonidogen) | 6282 | 0.010 | -0.1842 | No |
50 | SOCS2 | SOCS2 Entrez,  Source | suppressor of cytokine signaling 2 | 6400 | 0.009 | -0.1922 | No |
51 | AKAP12 | AKAP12 Entrez,  Source | A kinase (PRKA) anchor protein (gravin) 12 | 6511 | 0.007 | -0.1998 | No |
52 | PKN2 | PKN2 Entrez,  Source | protein kinase N2 | 6600 | 0.006 | -0.2058 | No |
53 | IL1A | IL1A Entrez,  Source | interleukin 1, alpha | 7065 | 0.001 | -0.2408 | No |
54 | CDKN2C | CDKN2C Entrez,  Source | cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) | 7160 | 0.000 | -0.2479 | No |
55 | PTPRK | PTPRK Entrez,  Source | protein tyrosine phosphatase, receptor type, K | 7463 | -0.003 | -0.2704 | No |
56 | RPS11 | RPS11 Entrez,  Source | ribosomal protein S11 | 7504 | -0.004 | -0.2731 | No |
57 | TCF4 | TCF4 Entrez,  Source | transcription factor 4 | 7631 | -0.005 | -0.2821 | No |
58 | STK38 | STK38 Entrez,  Source | serine/threonine kinase 38 | 7820 | -0.007 | -0.2956 | No |
59 | AP1B1 | AP1B1 Entrez,  Source | adaptor-related protein complex 1, beta 1 subunit | 7886 | -0.008 | -0.2997 | No |
60 | JUN | JUN Entrez,  Source | jun oncogene | 8081 | -0.010 | -0.3134 | No |
61 | VDAC1 | VDAC1 Entrez,  Source | voltage-dependent anion channel 1 | 8265 | -0.013 | -0.3260 | No |
62 | BARD1 | BARD1 Entrez,  Source | BRCA1 associated RING domain 1 | 8325 | -0.013 | -0.3291 | No |
63 | TIA1 | TIA1 Entrez,  Source | TIA1 cytotoxic granule-associated RNA binding protein | 8510 | -0.016 | -0.3415 | No |
64 | E2F5 | E2F5 Entrez,  Source | E2F transcription factor 5, p130-binding | 8663 | -0.018 | -0.3513 | No |
65 | SMAD1 | SMAD1 Entrez,  Source | SMAD, mothers against DPP homolog 1 (Drosophila) | 9561 | -0.030 | -0.4162 | No |
66 | PTPRE | PTPRE Entrez,  Source | protein tyrosine phosphatase, receptor type, E | 9579 | -0.030 | -0.4145 | No |
67 | HIST1H4B | HIST1H4B Entrez,  Source | histone cluster 1, H4b | 9620 | -0.031 | -0.4145 | No |
68 | PCAF | PCAF Entrez,  Source | p300/CBP-associated factor | 9640 | -0.031 | -0.4129 | No |
69 | SNN | SNN Entrez,  Source | stannin | 9690 | -0.032 | -0.4135 | No |
70 | SMARCA4 | SMARCA4 Entrez,  Source | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 | 9879 | -0.034 | -0.4243 | No |
71 | ZFP36L1 | ZFP36L1 Entrez,  Source | zinc finger protein 36, C3H type-like 1 | 10023 | -0.037 | -0.4315 | No |
72 | PCBP2 | PCBP2 Entrez,  Source | poly(rC) binding protein 2 | 10046 | -0.038 | -0.4295 | No |
73 | TOP2A | TOP2A Entrez,  Source | topoisomerase (DNA) II alpha 170kDa | 10131 | -0.039 | -0.4320 | No |
74 | ING1 | ING1 Entrez,  Source | inhibitor of growth family, member 1 | 10309 | -0.042 | -0.4414 | No |
75 | DCK | DCK Entrez,  Source | deoxycytidine kinase | 10358 | -0.043 | -0.4408 | No |
76 | PPP3CC | PPP3CC Entrez,  Source | protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform (calcineurin A gamma) | 10460 | -0.045 | -0.4441 | No |
77 | CALM1 | CALM1 Entrez,  Source | calmodulin 1 (phosphorylase kinase, delta) | 10481 | -0.045 | -0.4412 | No |
78 | CXCR4 | CXCR4 Entrez,  Source | chemokine (C-X-C motif) receptor 4 | 10564 | -0.046 | -0.4429 | No |
79 | FHIT | FHIT Entrez,  Source | fragile histidine triad gene | 10628 | -0.047 | -0.4430 | No |
80 | REXO2 | REXO2 Entrez,  Source | REX2, RNA exonuclease 2 homolog (S. cerevisiae) | 10632 | -0.048 | -0.4385 | No |
81 | TTC13 | TTC13 Entrez,  Source | tetratricopeptide repeat domain 13 | 10718 | -0.050 | -0.4401 | No |
82 | NEIL1 | NEIL1 Entrez,  Source | nei endonuclease VIII-like 1 (E. coli) | 10974 | -0.055 | -0.4540 | No |
83 | TLE4 | TLE4 Entrez,  Source | transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) | 11148 | -0.059 | -0.4612 | Yes |
84 | CSH2 | CSH2 Entrez,  Source | chorionic somatomammotropin hormone 2 | 11208 | -0.060 | -0.4598 | Yes |
85 | ARHGEF7 | ARHGEF7 Entrez,  Source | Rho guanine nucleotide exchange factor (GEF) 7 | 11238 | -0.061 | -0.4560 | Yes |
86 | SIAH2 | SIAH2 Entrez,  Source | seven in absentia homolog 2 (Drosophila) | 11360 | -0.064 | -0.4589 | Yes |
87 | RB1 | RB1 Entrez,  Source | retinoblastoma 1 (including osteosarcoma) | 11401 | -0.065 | -0.4555 | Yes |
88 | EIF2AK3 | EIF2AK3 Entrez,  Source | eukaryotic translation initiation factor 2-alpha kinase 3 | 11434 | -0.066 | -0.4515 | Yes |
89 | ABCG2 | ABCG2 Entrez,  Source | ATP-binding cassette, sub-family G (WHITE), member 2 | 11438 | -0.066 | -0.4452 | Yes |
90 | STAG3 | STAG3 Entrez,  Source | stromal antigen 3 | 11623 | -0.073 | -0.4519 | Yes |
91 | CDKN1B | CDKN1B Entrez,  Source | cyclin-dependent kinase inhibitor 1B (p27, Kip1) | 11651 | -0.074 | -0.4467 | Yes |
92 | HIP1R | HIP1R Entrez,  Source | huntingtin interacting protein 1 related | 11863 | -0.082 | -0.4547 | Yes |
93 | CTBP2 | CTBP2 Entrez,  Source | C-terminal binding protein 2 | 11872 | -0.082 | -0.4473 | Yes |
94 | MAG | MAG Entrez,  Source | myelin associated glycoprotein | 11884 | -0.083 | -0.4400 | Yes |
95 | CAPN3 | CAPN3 Entrez,  Source | calpain 3, (p94) | 11952 | -0.085 | -0.4368 | Yes |
96 | TAF9B | TAF9B Entrez,  Source | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa | 11960 | -0.085 | -0.4289 | Yes |
97 | FMR1 | FMR1 Entrez,  Source | fragile X mental retardation 1 | 12093 | -0.091 | -0.4300 | Yes |
98 | PSPC1 | PSPC1 Entrez,  Source | paraspeckle component 1 | 12162 | -0.095 | -0.4258 | Yes |
99 | ELF2 | ELF2 Entrez,  Source | E74-like factor 2 (ets domain transcription factor) | 12183 | -0.096 | -0.4179 | Yes |
100 | FOXP1 | FOXP1 Entrez,  Source | forkhead box P1 | 12207 | -0.097 | -0.4101 | Yes |
101 | DNASE2B | DNASE2B Entrez,  Source | deoxyribonuclease II beta | 12211 | -0.097 | -0.4008 | Yes |
102 | IGF2R | IGF2R Entrez,  Source | insulin-like growth factor 2 receptor | 12385 | -0.110 | -0.4031 | Yes |
103 | TGIF | TGIF Entrez,  Source | TGFB-induced factor (TALE family homeobox) | 12388 | -0.110 | -0.3925 | Yes |
104 | MOG | MOG Entrez,  Source | myelin oligodendrocyte glycoprotein | 12447 | -0.114 | -0.3857 | Yes |
105 | JMJD1C | JMJD1C Entrez,  Source | jumonji domain containing 1C | 12465 | -0.115 | -0.3757 | Yes |
106 | WSB2 | WSB2 Entrez,  Source | WD repeat and SOCS box-containing 2 | 12515 | -0.118 | -0.3678 | Yes |
107 | P2RX5 | P2RX5 Entrez,  Source | purinergic receptor P2X, ligand-gated ion channel, 5 | 12575 | -0.124 | -0.3601 | Yes |
108 | UXS1 | UXS1 Entrez,  Source | UDP-glucuronate decarboxylase 1 | 12611 | -0.126 | -0.3504 | Yes |
109 | ISG20 | ISG20 Entrez,  Source | interferon stimulated exonuclease gene 20kDa | 12691 | -0.134 | -0.3433 | Yes |
110 | VIL2 | VIL2 Entrez,  Source | villin 2 (ezrin) | 13025 | -0.196 | -0.3492 | Yes |
111 | ANKRD10 | ANKRD10 Entrez,  Source | ankyrin repeat domain 10 | 13034 | -0.200 | -0.3302 | Yes |
112 | NPY | NPY Entrez,  Source | neuropeptide Y | 13095 | -0.230 | -0.3122 | Yes |
113 | SCHIP1 | SCHIP1 Entrez,  Source | schwannomin interacting protein 1 | 13215 | -0.309 | -0.2909 | Yes |
114 | ID3 | ID3 Entrez,  Source | inhibitor of DNA binding 3, dominant negative helix-loop-helix protein | 13220 | -0.314 | -0.2604 | Yes |
115 | CITED2 | CITED2 Entrez,  Source | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 | 13226 | -0.322 | -0.2292 | Yes |
116 | DDR1 | DDR1 Entrez,  Source | discoidin domain receptor family, member 1 | 13240 | -0.338 | -0.1970 | Yes |
117 | MME | MME Entrez,  Source | membrane metallo-endopeptidase (neutral endopeptidase, enkephalinase) | 13245 | -0.347 | -0.1633 | Yes |
118 | CD69 | CD69 Entrez,  Source | CD69 molecule | 13297 | -0.457 | -0.1224 | Yes |
119 | DBN1 | DBN1 Entrez,  Source | drebrin 1 | 13305 | -0.475 | -0.0763 | Yes |
120 | CD24 | CD24 Entrez,  Source | CD24 molecule | 13336 | -0.806 | 0.0005 | Yes |