Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_48h_versus_single_gel_48h.class.cls #double_gel_48h_versus_single_gel_48h_repos |
| Phenotype | class.cls#double_gel_48h_versus_single_gel_48h_repos |
| Upregulated in class | single_gel_48h |
| GeneSet | HCC_SURVIVAL_GOOD_VS_POOR_DN |
| Enrichment Score (ES) | -0.6324563 |
| Normalized Enrichment Score (NES) | -2.1913111 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.0013081467 |
| FWER p-Value | 0.0090 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | SLC34A1 | SLC34A1 Entrez, Source | solute carrier family 34 (sodium phosphate), member 1 | 78 | 0.245 | 0.0298 | No |
| 2 | USP1 | USP1 Entrez, Source | ubiquitin specific peptidase 1 | 909 | 0.102 | -0.0179 | No |
| 3 | MYH2 | MYH2 Entrez, Source | myosin, heavy chain 2, skeletal muscle, adult | 1689 | 0.074 | -0.0657 | No |
| 4 | MARCKS | MARCKS Entrez, Source | myristoylated alanine-rich protein kinase C substrate | 1730 | 0.074 | -0.0580 | No |
| 5 | RWDD1 | RWDD1 Entrez, Source | RWD domain containing 1 | 1914 | 0.070 | -0.0616 | No |
| 6 | HNRPA1 | HNRPA1 Entrez, Source | heterogeneous nuclear ribonucleoprotein A1 | 2977 | 0.050 | -0.1344 | No |
| 7 | NOL5A | NOL5A Entrez, Source | nucleolar protein 5A (56kDa with KKE/D repeat) | 3346 | 0.045 | -0.1555 | No |
| 8 | CD164 | CD164 Entrez, Source | CD164 molecule, sialomucin | 3516 | 0.043 | -0.1620 | No |
| 9 | CSDA | CSDA Entrez, Source | cold shock domain protein A | 3880 | 0.038 | -0.1838 | No |
| 10 | TES | TES Entrez, Source | testis derived transcript (3 LIM domains) | 3904 | 0.038 | -0.1800 | No |
| 11 | FBL | FBL Entrez, Source | fibrillarin | 4004 | 0.036 | -0.1822 | No |
| 12 | NSF | NSF Entrez, Source | N-ethylmaleimide-sensitive factor | 4152 | 0.034 | -0.1883 | No |
| 13 | OPLAH | OPLAH Entrez, Source | 5-oxoprolinase (ATP-hydrolysing) | 4230 | 0.033 | -0.1892 | No |
| 14 | PCNA | PCNA Entrez, Source | proliferating cell nuclear antigen | 4258 | 0.033 | -0.1864 | No |
| 15 | NPM1 | NPM1 Entrez, Source | nucleophosmin (nucleolar phosphoprotein B23, numatrin) | 4979 | 0.024 | -0.2372 | No |
| 16 | LYAR | LYAR Entrez, Source | - | 5575 | 0.017 | -0.2795 | No |
| 17 | RPL36A | RPL36A Entrez, Source | ribosomal protein L36a | 5838 | 0.015 | -0.2971 | No |
| 18 | RPS3A | RPS3A Entrez, Source | ribosomal protein S3A | 6170 | 0.011 | -0.3204 | No |
| 19 | CCT6A | CCT6A Entrez, Source | chaperonin containing TCP1, subunit 6A (zeta 1) | 6251 | 0.010 | -0.3250 | No |
| 20 | BZW2 | BZW2 Entrez, Source | basic leucine zipper and W2 domains 2 | 6314 | 0.009 | -0.3283 | No |
| 21 | RPS3 | RPS3 Entrez, Source | ribosomal protein S3 | 6390 | 0.009 | -0.3326 | No |
| 22 | RAN | RAN Entrez, Source | RAN, member RAS oncogene family | 6446 | 0.008 | -0.3356 | No |
| 23 | RPL35 | RPL35 Entrez, Source | ribosomal protein L35 | 6491 | 0.008 | -0.3378 | No |
| 24 | ATP5C1 | ATP5C1 Entrez, Source | ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 | 6499 | 0.008 | -0.3372 | No |
| 25 | PELI1 | PELI1 Entrez, Source | pellino homolog 1 (Drosophila) | 6671 | 0.006 | -0.3493 | No |
| 26 | RPL9 | RPL9 Entrez, Source | ribosomal protein L9 | 6684 | 0.006 | -0.3494 | No |
| 27 | BUB3 | BUB3 Entrez, Source | BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) | 6706 | 0.005 | -0.3502 | No |
| 28 | RPL27 | RPL27 Entrez, Source | ribosomal protein L27 | 6900 | 0.003 | -0.3643 | No |
| 29 | HNRPC | HNRPC Entrez, Source | heterogeneous nuclear ribonucleoprotein C (C1/C2) | 6918 | 0.003 | -0.3652 | No |
| 30 | RPS9 | RPS9 Entrez, Source | ribosomal protein S9 | 7043 | 0.002 | -0.3743 | No |
| 31 | RPL17 | RPL17 Entrez, Source | ribosomal protein L17 | 7045 | 0.002 | -0.3742 | No |
| 32 | RPS6 | RPS6 Entrez, Source | ribosomal protein S6 | 7180 | 0.000 | -0.3843 | No |
| 33 | RPS5 | RPS5 Entrez, Source | ribosomal protein S5 | 7352 | -0.002 | -0.3969 | No |
| 34 | ROD1 | ROD1 Entrez, Source | ROD1 regulator of differentiation 1 (S. pombe) | 7391 | -0.002 | -0.3994 | No |
| 35 | RPL31 | RPL31 Entrez, Source | ribosomal protein L31 | 7458 | -0.003 | -0.4039 | No |
| 36 | LXN | LXN Entrez, Source | latexin | 7537 | -0.004 | -0.4092 | No |
| 37 | CCT5 | CCT5 Entrez, Source | chaperonin containing TCP1, subunit 5 (epsilon) | 7574 | -0.005 | -0.4112 | No |
| 38 | ODC1 | ODC1 Entrez, Source | ornithine decarboxylase 1 | 7596 | -0.005 | -0.4121 | No |
| 39 | RBX1 | RBX1 Entrez, Source | ring-box 1 | 7789 | -0.007 | -0.4255 | No |
| 40 | ATP2B1 | ATP2B1 Entrez, Source | ATPase, Ca++ transporting, plasma membrane 1 | 7838 | -0.008 | -0.4281 | No |
| 41 | RPS18 | RPS18 Entrez, Source | ribosomal protein S18 | 7876 | -0.008 | -0.4297 | No |
| 42 | HDAC2 | HDAC2 Entrez, Source | histone deacetylase 2 | 8020 | -0.010 | -0.4390 | No |
| 43 | PTMA | PTMA Entrez, Source | prothymosin, alpha (gene sequence 28) | 8601 | -0.017 | -0.4803 | No |
| 44 | HMGN1 | HMGN1 Entrez, Source | high-mobility group nucleosome binding domain 1 | 9508 | -0.029 | -0.5444 | No |
| 45 | NAP1L1 | NAP1L1 Entrez, Source | nucleosome assembly protein 1-like 1 | 9838 | -0.034 | -0.5642 | No |
| 46 | YWHAB | YWHAB Entrez, Source | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide | 9932 | -0.035 | -0.5661 | No |
| 47 | ITPR3 | ITPR3 Entrez, Source | inositol 1,4,5-triphosphate receptor, type 3 | 10318 | -0.042 | -0.5890 | No |
| 48 | IER3 | IER3 Entrez, Source | immediate early response 3 | 10439 | -0.044 | -0.5917 | No |
| 49 | KIF5B | KIF5B Entrez, Source | kinesin family member 5B | 10742 | -0.050 | -0.6071 | No |
| 50 | YWHAH | YWHAH Entrez, Source | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide | 11003 | -0.056 | -0.6185 | No |
| 51 | RALA | RALA Entrez, Source | v-ral simian leukemia viral oncogene homolog A (ras related) | 11027 | -0.056 | -0.6120 | No |
| 52 | HIF1A | HIF1A Entrez, Source | hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | 11170 | -0.060 | -0.6140 | No |
| 53 | FABP5 | FABP5 Entrez, Source | fatty acid binding protein 5 (psoriasis-associated) | 11296 | -0.062 | -0.6144 | No |
| 54 | DEK | DEK Entrez, Source | DEK oncogene (DNA binding) | 11531 | -0.070 | -0.6219 | Yes |
| 55 | KHDRBS1 | KHDRBS1 Entrez, Source | KH domain containing, RNA binding, signal transduction associated 1 | 11672 | -0.074 | -0.6216 | Yes |
| 56 | ACTR3 | ACTR3 Entrez, Source | ARP3 actin-related protein 3 homolog (yeast) | 11757 | -0.077 | -0.6167 | Yes |
| 57 | MAPRE1 | MAPRE1 Entrez, Source | microtubule-associated protein, RP/EB family, member 1 | 11845 | -0.081 | -0.6114 | Yes |
| 58 | CTBP2 | CTBP2 Entrez, Source | C-terminal binding protein 2 | 11872 | -0.082 | -0.6015 | Yes |
| 59 | CALM2 | CALM2 Entrez, Source | calmodulin 2 (phosphorylase kinase, delta) | 12036 | -0.089 | -0.6008 | Yes |
| 60 | MCM7 | MCM7 Entrez, Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 12106 | -0.092 | -0.5926 | Yes |
| 61 | CBX3 | CBX3 Entrez, Source | chromobox homolog 3 (HP1 gamma homolog, Drosophila) | 12288 | -0.103 | -0.5913 | Yes |
| 62 | CDK4 | CDK4 Entrez, Source | cyclin-dependent kinase 4 | 12294 | -0.103 | -0.5766 | Yes |
| 63 | KLF5 | KLF5 Entrez, Source | Kruppel-like factor 5 (intestinal) | 12409 | -0.112 | -0.5690 | Yes |
| 64 | YWHAQ | YWHAQ Entrez, Source | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide | 12415 | -0.112 | -0.5530 | Yes |
| 65 | ANXA4 | ANXA4 Entrez, Source | annexin A4 | 12446 | -0.114 | -0.5386 | Yes |
| 66 | HN1 | HN1 Entrez, Source | hematological and neurological expressed 1 | 12571 | -0.123 | -0.5301 | Yes |
| 67 | DUSP18 | DUSP18 Entrez, Source | dual specificity phosphatase 18 | 12695 | -0.135 | -0.5197 | Yes |
| 68 | BCAT1 | BCAT1 Entrez, Source | branched chain aminotransferase 1, cytosolic | 13084 | -0.224 | -0.5163 | Yes |
| 69 | ANXA3 | ANXA3 Entrez, Source | annexin A3 | 13112 | -0.236 | -0.4839 | Yes |
| 70 | CCNB1 | CCNB1 Entrez, Source | cyclin B1 | 13126 | -0.245 | -0.4492 | Yes |
| 71 | TMSB4X | TMSB4X Entrez, Source | thymosin, beta 4, X-linked | 13134 | -0.249 | -0.4134 | Yes |
| 72 | CLIC1 | CLIC1 Entrez, Source | chloride intracellular channel 1 | 13181 | -0.281 | -0.3760 | Yes |
| 73 | S100A6 | S100A6 Entrez, Source | S100 calcium binding protein A6 | 13234 | -0.331 | -0.3316 | Yes |
| 74 | CCNA2 | CCNA2 Entrez, Source | cyclin A2 | 13257 | -0.367 | -0.2798 | Yes |
| 75 | SERPINH1 | SERPINH1 Entrez, Source | serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) | 13296 | -0.454 | -0.2164 | Yes |
| 76 | MCM6 | MCM6 Entrez, Source | MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) | 13301 | -0.469 | -0.1482 | Yes |
| 77 | KIAA0101 | KIAA0101 Entrez, Source | KIAA0101 | 13316 | -0.512 | -0.0747 | Yes |
| 78 | RGS2 | RGS2 Entrez, Source | regulator of G-protein signalling 2, 24kDa | 13320 | -0.525 | 0.0017 | Yes |
