Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_48h_versus_single_gel_48h.class.cls #double_gel_48h_versus_single_gel_48h_repos |
| Phenotype | class.cls#double_gel_48h_versus_single_gel_48h_repos |
| Upregulated in class | single_gel_48h |
| GeneSet | IDX_TSA_DN_CLUSTER2 |
| Enrichment Score (ES) | -0.72155535 |
| Normalized Enrichment Score (NES) | -2.3529415 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.0 |
| FWER p-Value | 0.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | VCAM1 | VCAM1 Entrez, Source | vascular cell adhesion molecule 1 | 213 | 0.170 | 0.0112 | No |
| 2 | FGF7 | FGF7 Entrez, Source | fibroblast growth factor 7 (keratinocyte growth factor) | 1152 | 0.091 | -0.0446 | No |
| 3 | PDPN | PDPN Entrez, Source | podoplanin | 1510 | 0.079 | -0.0588 | No |
| 4 | TWIST2 | TWIST2 Entrez, Source | twist homolog 2 (Drosophila) | 2094 | 0.066 | -0.0920 | No |
| 5 | SLC7A5 | SLC7A5 Entrez, Source | solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 | 2396 | 0.060 | -0.1050 | No |
| 6 | PTGIS | PTGIS Entrez, Source | prostaglandin I2 (prostacyclin) synthase | 2515 | 0.058 | -0.1045 | No |
| 7 | SMAD6 | SMAD6 Entrez, Source | SMAD, mothers against DPP homolog 6 (Drosophila) | 3551 | 0.042 | -0.1756 | No |
| 8 | TES | TES Entrez, Source | testis derived transcript (3 LIM domains) | 3904 | 0.038 | -0.1960 | No |
| 9 | NQO2 | NQO2 Entrez, Source | NAD(P)H dehydrogenase, quinone 2 | 4039 | 0.036 | -0.2004 | No |
| 10 | SERPINF1 | SERPINF1 Entrez, Source | serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 | 5398 | 0.019 | -0.2994 | No |
| 11 | MAP1LC3B | MAP1LC3B Entrez, Source | microtubule-associated protein 1 light chain 3 beta | 5425 | 0.019 | -0.2983 | No |
| 12 | SLC38A4 | SLC38A4 Entrez, Source | solute carrier family 38, member 4 | 6051 | 0.012 | -0.3434 | No |
| 13 | EMP3 | EMP3 Entrez, Source | epithelial membrane protein 3 | 7711 | -0.006 | -0.4672 | No |
| 14 | SLC1A4 | SLC1A4 Entrez, Source | solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 | 8089 | -0.010 | -0.4939 | No |
| 15 | NCAM1 | NCAM1 Entrez, Source | neural cell adhesion molecule 1 | 8309 | -0.013 | -0.5082 | No |
| 16 | TINP1 | TINP1 Entrez, Source | - | 8804 | -0.019 | -0.5423 | No |
| 17 | LAMP2 | LAMP2 Entrez, Source | lysosomal-associated membrane protein 2 | 9376 | -0.027 | -0.5809 | No |
| 18 | SCPEP1 | SCPEP1 Entrez, Source | serine carboxypeptidase 1 | 9678 | -0.032 | -0.5984 | No |
| 19 | PLXNB2 | PLXNB2 Entrez, Source | plexin B2 | 9766 | -0.033 | -0.5997 | No |
| 20 | CAPG | CAPG Entrez, Source | capping protein (actin filament), gelsolin-like | 10094 | -0.038 | -0.6181 | No |
| 21 | BAX | BAX Entrez, Source | BCL2-associated X protein | 10281 | -0.041 | -0.6255 | No |
| 22 | ZFP36L2 | ZFP36L2 Entrez, Source | zinc finger protein 36, C3H type-like 2 | 10449 | -0.044 | -0.6310 | No |
| 23 | GNB1 | GNB1 Entrez, Source | guanine nucleotide binding protein (G protein), beta polypeptide 1 | 11004 | -0.056 | -0.6637 | No |
| 24 | PRDX4 | PRDX4 Entrez, Source | peroxiredoxin 4 | 11241 | -0.061 | -0.6717 | No |
| 25 | CD99 | CD99 Entrez, Source | CD99 molecule | 11871 | -0.082 | -0.7058 | No |
| 26 | ACTA2 | ACTA2 Entrez, Source | actin, alpha 2, smooth muscle, aorta | 12081 | -0.091 | -0.7070 | Yes |
| 27 | MYH9 | MYH9 Entrez, Source | myosin, heavy chain 9, non-muscle | 12120 | -0.093 | -0.6950 | Yes |
| 28 | PPGB | PPGB Entrez, Source | protective protein for beta-galactosidase (galactosialidosis) | 12222 | -0.098 | -0.6868 | Yes |
| 29 | TMSB10 | TMSB10 Entrez, Source | thymosin, beta 10 | 12400 | -0.111 | -0.6823 | Yes |
| 30 | SERTAD1 | SERTAD1 Entrez, Source | SERTA domain containing 1 | 12410 | -0.112 | -0.6650 | Yes |
| 31 | PGCP | PGCP Entrez, Source | - | 12492 | -0.117 | -0.6524 | Yes |
| 32 | ASAH1 | ASAH1 Entrez, Source | N-acylsphingosine amidohydrolase (acid ceramidase) 1 | 12530 | -0.120 | -0.6360 | Yes |
| 33 | TSPAN6 | TSPAN6 Entrez, Source | tetraspanin 6 | 12624 | -0.127 | -0.6225 | Yes |
| 34 | PLD3 | PLD3 Entrez, Source | phospholipase D family, member 3 | 12657 | -0.130 | -0.6040 | Yes |
| 35 | DSTN | DSTN Entrez, Source | destrin (actin depolymerizing factor) | 12710 | -0.136 | -0.5860 | Yes |
| 36 | CAP1 | CAP1 Entrez, Source | CAP, adenylate cyclase-associated protein 1 (yeast) | 12748 | -0.141 | -0.5663 | Yes |
| 37 | ANXA5 | ANXA5 Entrez, Source | annexin A5 | 12886 | -0.162 | -0.5506 | Yes |
| 38 | LEPROT | LEPROT Entrez, Source | leptin receptor overlapping transcript | 12925 | -0.171 | -0.5261 | Yes |
| 39 | ANXA3 | ANXA3 Entrez, Source | annexin A3 | 13112 | -0.236 | -0.5021 | Yes |
| 40 | CD276 | CD276 Entrez, Source | CD276 molecule | 13120 | -0.240 | -0.4641 | Yes |
| 41 | FXYD5 | FXYD5 Entrez, Source | FXYD domain containing ion transport regulator 5 | 13131 | -0.248 | -0.4251 | Yes |
| 42 | RAB31 | RAB31 Entrez, Source | RAB31, member RAS oncogene family | 13200 | -0.292 | -0.3834 | Yes |
| 43 | BDNF | BDNF Entrez, Source | brain-derived neurotrophic factor | 13212 | -0.305 | -0.3353 | Yes |
| 44 | F2R | F2R Entrez, Source | coagulation factor II (thrombin) receptor | 13224 | -0.321 | -0.2847 | Yes |
| 45 | PDLIM7 | PDLIM7 Entrez, Source | PDZ and LIM domain 7 (enigma) | 13231 | -0.327 | -0.2326 | Yes |
| 46 | LOX | LOX Entrez, Source | lysyl oxidase | 13251 | -0.352 | -0.1776 | Yes |
| 47 | PRSS23 | PRSS23 Entrez, Source | protease, serine, 23 | 13319 | -0.520 | -0.0992 | Yes |
| 48 | MSN | MSN Entrez, Source | moesin | 13327 | -0.629 | 0.0011 | Yes |
