Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_48h_versus_single_gel_48h.class.cls #double_gel_48h_versus_single_gel_48h_repos |
| Phenotype | class.cls#double_gel_48h_versus_single_gel_48h_repos |
| Upregulated in class | single_gel_48h |
| GeneSet | TSA_HEPATOMA_CANCER_UP |
| Enrichment Score (ES) | -0.6186384 |
| Normalized Enrichment Score (NES) | -1.828999 |
| Nominal p-value | 0.0033670033 |
| FDR q-value | 0.036304668 |
| FWER p-Value | 0.925 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | VTN | VTN Entrez, Source | vitronectin | 420 | 0.133 | 0.0149 | No |
| 2 | ITGA7 | ITGA7 Entrez, Source | integrin, alpha 7 | 752 | 0.109 | 0.0282 | No |
| 3 | CD8B | CD8B Entrez, Source | CD8b molecule | 1005 | 0.097 | 0.0433 | No |
| 4 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 2001 | 0.068 | -0.0076 | No |
| 5 | JUNB | JUNB Entrez, Source | jun B proto-oncogene | 2033 | 0.067 | 0.0136 | No |
| 6 | CD9 | CD9 Entrez, Source | CD9 molecule | 2527 | 0.058 | -0.0031 | No |
| 7 | IGFBP2 | IGFBP2 Entrez, Source | insulin-like growth factor binding protein 2, 36kDa | 3303 | 0.046 | -0.0454 | No |
| 8 | PLA2G6 | PLA2G6 Entrez, Source | phospholipase A2, group VI (cytosolic, calcium-independent) | 5243 | 0.021 | -0.1837 | No |
| 9 | CASP9 | CASP9 Entrez, Source | caspase 9, apoptosis-related cysteine peptidase | 5394 | 0.019 | -0.1882 | No |
| 10 | ARHGDIB | ARHGDIB Entrez, Source | Rho GDP dissociation inhibitor (GDI) beta | 6080 | 0.012 | -0.2354 | No |
| 11 | ANK1 | ANK1 Entrez, Source | ankyrin 1, erythrocytic | 7002 | 0.002 | -0.3039 | No |
| 12 | TGFB1 | TGFB1 Entrez, Source | transforming growth factor, beta 1 (Camurati-Engelmann disease) | 7053 | 0.001 | -0.3072 | No |
| 13 | CDKN2C | CDKN2C Entrez, Source | cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) | 7160 | 0.000 | -0.3150 | No |
| 14 | FASTK | FASTK Entrez, Source | Fas-activated serine/threonine kinase | 7355 | -0.002 | -0.3289 | No |
| 15 | FBN2 | FBN2 Entrez, Source | fibrillin 2 (congenital contractural arachnodactyly) | 8235 | -0.012 | -0.3907 | No |
| 16 | PDGFRB | PDGFRB Entrez, Source | platelet-derived growth factor receptor, beta polypeptide | 8636 | -0.017 | -0.4146 | No |
| 17 | NGFR | NGFR Entrez, Source | nerve growth factor receptor (TNFR superfamily, member 16) | 8817 | -0.019 | -0.4214 | No |
| 18 | LUM | LUM Entrez, Source | lumican | 8862 | -0.020 | -0.4177 | No |
| 19 | BSG | BSG Entrez, Source | basigin (Ok blood group) | 9210 | -0.025 | -0.4352 | No |
| 20 | JUP | JUP Entrez, Source | junction plakoglobin | 10892 | -0.053 | -0.5427 | No |
| 21 | BAD | BAD Entrez, Source | BCL2-antagonist of cell death | 11428 | -0.066 | -0.5598 | No |
| 22 | RHOG | RHOG Entrez, Source | ras homolog gene family, member G (rho G) | 12212 | -0.097 | -0.5845 | Yes |
| 23 | QSCN6 | QSCN6 Entrez, Source | quiescin Q6 | 12235 | -0.099 | -0.5516 | Yes |
| 24 | VEGFC | VEGFC Entrez, Source | vascular endothelial growth factor C | 12665 | -0.131 | -0.5381 | Yes |
| 25 | HBEGF | HBEGF Entrez, Source | heparin-binding EGF-like growth factor | 12974 | -0.182 | -0.4975 | Yes |
| 26 | CAV2 | CAV2 Entrez, Source | caveolin 2 | 13140 | -0.252 | -0.4217 | Yes |
| 27 | TIMP2 | TIMP2 Entrez, Source | TIMP metallopeptidase inhibitor 2 | 13228 | -0.323 | -0.3152 | Yes |
| 28 | MMP11 | MMP11 Entrez, Source | matrix metallopeptidase 11 (stromelysin 3) | 13286 | -0.422 | -0.1719 | Yes |
| 29 | CTGF | CTGF Entrez, Source | connective tissue growth factor | 13313 | -0.503 | 0.0022 | Yes |
