Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_48h_versus_single_gel_48h.class.cls #double_gel_48h_versus_single_gel_48h_repos |
Phenotype | class.cls#double_gel_48h_versus_single_gel_48h_repos |
Upregulated in class | double_gel_48h |
GeneSet | V$HNF1_C |
Enrichment Score (ES) | 0.37122652 |
Normalized Enrichment Score (NES) | 1.5408208 |
Nominal p-value | 0.0029498525 |
FDR q-value | 0.12451222 |
FWER p-Value | 1.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | G6PC | G6PC Entrez,  Source | glucose-6-phosphatase, catalytic subunit | 26 | 0.337 | 0.0376 | Yes |
2 | AQP9 | AQP9 Entrez,  Source | aquaporin 9 | 57 | 0.272 | 0.0673 | Yes |
3 | PKLR | PKLR Entrez,  Source | pyruvate kinase, liver and RBC | 74 | 0.247 | 0.0951 | Yes |
4 | AFM | AFM Entrez,  Source | afamin | 122 | 0.205 | 0.1156 | Yes |
5 | SGK2 | SGK2 Entrez,  Source | serum/glucocorticoid regulated kinase 2 | 136 | 0.198 | 0.1378 | Yes |
6 | SERPINA7 | SERPINA7 Entrez,  Source | serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 | 150 | 0.192 | 0.1594 | Yes |
7 | CART1 | CART1 Entrez,  Source | cartilage paired-class homeoprotein 1 | 296 | 0.150 | 0.1661 | Yes |
8 | MBNL1 | MBNL1 Entrez,  Source | muscleblind-like (Drosophila) | 342 | 0.143 | 0.1794 | Yes |
9 | CSF3 | CSF3 Entrez,  Source | colony stimulating factor 3 (granulocyte) | 359 | 0.141 | 0.1947 | Yes |
10 | SLC37A4 | SLC37A4 Entrez,  Source | solute carrier family 37 (glycerol-6-phosphate transporter), member 4 | 368 | 0.139 | 0.2104 | Yes |
11 | RBP4 | RBP4 Entrez,  Source | retinol binding protein 4, plasma | 409 | 0.134 | 0.2232 | Yes |
12 | SLC18A2 | SLC18A2 Entrez,  Source | solute carrier family 18 (vesicular monoamine), member 2 | 411 | 0.134 | 0.2388 | Yes |
13 | FGB | FGB Entrez,  Source | fibrinogen beta chain | 461 | 0.129 | 0.2503 | Yes |
14 | AFP | AFP Entrez,  Source | alpha-fetoprotein | 470 | 0.128 | 0.2647 | Yes |
15 | EGR1 | EGR1 Entrez,  Source | early growth response 1 | 546 | 0.122 | 0.2733 | Yes |
16 | APOM | APOM Entrez,  Source | apolipoprotein M | 628 | 0.117 | 0.2809 | Yes |
17 | PCDH8 | PCDH8 Entrez,  Source | protocadherin 8 | 673 | 0.114 | 0.2909 | Yes |
18 | DPYD | DPYD Entrez,  Source | dihydropyrimidine dehydrogenase | 745 | 0.109 | 0.2983 | Yes |
19 | CDH16 | CDH16 Entrez,  Source | cadherin 16, KSP-cadherin | 804 | 0.107 | 0.3065 | Yes |
20 | PTGS2 | PTGS2 Entrez,  Source | prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) | 886 | 0.103 | 0.3125 | Yes |
21 | FGF16 | FGF16 Entrez,  Source | fibroblast growth factor 16 | 937 | 0.100 | 0.3204 | Yes |
22 | ACF | ACF Entrez,  Source | - | 955 | 0.099 | 0.3308 | Yes |
23 | GJB1 | GJB1 Entrez,  Source | gap junction protein, beta 1, 32kDa (connexin 32, Charcot-Marie-Tooth neuropathy, X-linked) | 1107 | 0.093 | 0.3303 | Yes |
24 | FGF7 | FGF7 Entrez,  Source | fibroblast growth factor 7 (keratinocyte growth factor) | 1152 | 0.091 | 0.3377 | Yes |
25 | CPN1 | CPN1 Entrez,  Source | carboxypeptidase N, polypeptide 1, 50kD | 1192 | 0.090 | 0.3453 | Yes |
26 | FGA | FGA Entrez,  Source | fibrinogen alpha chain | 1253 | 0.088 | 0.3510 | Yes |
27 | SLC6A5 | SLC6A5 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, glycine), member 5 | 1258 | 0.087 | 0.3610 | Yes |
28 | FGFR4 | FGFR4 Entrez,  Source | fibroblast growth factor receptor 4 | 1473 | 0.080 | 0.3543 | Yes |
29 | SPINK1 | SPINK1 Entrez,  Source | serine peptidase inhibitor, Kazal type 1 | 1631 | 0.076 | 0.3513 | Yes |
30 | SERPINA4 | SERPINA4 Entrez,  Source | serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 | 1644 | 0.076 | 0.3593 | Yes |
31 | MARCKS | MARCKS Entrez,  Source | myristoylated alanine-rich protein kinase C substrate | 1730 | 0.074 | 0.3615 | Yes |
32 | PVRL1 | PVRL1 Entrez,  Source | poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin) | 1799 | 0.072 | 0.3649 | Yes |
33 | PROC | PROC Entrez,  Source | protein C (inactivator of coagulation factors Va and VIIIa) | 1881 | 0.070 | 0.3670 | Yes |
34 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 1934 | 0.070 | 0.3712 | Yes |
35 | TOB1 | TOB1 Entrez,  Source | transducer of ERBB2, 1 | 2158 | 0.065 | 0.3620 | No |
36 | F2 | F2 Entrez,  Source | coagulation factor II (thrombin) | 2483 | 0.059 | 0.3444 | No |
37 | GUCY2F | GUCY2F Entrez,  Source | guanylate cyclase 2F, retinal | 2753 | 0.054 | 0.3304 | No |
38 | GC | GC Entrez,  Source | group-specific component (vitamin D binding protein) | 3034 | 0.050 | 0.3151 | No |
39 | DLX1 | DLX1 Entrez,  Source | distal-less homeobox 1 | 3150 | 0.048 | 0.3120 | No |
40 | SLC1A1 | SLC1A1 Entrez,  Source | solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 | 3223 | 0.047 | 0.3121 | No |
41 | FOXD3 | FOXD3 Entrez,  Source | forkhead box D3 | 3243 | 0.047 | 0.3161 | No |
42 | GUCA2B | GUCA2B Entrez,  Source | guanylate cyclase activator 2B (uroguanylin) | 3325 | 0.045 | 0.3153 | No |
43 | THRA | THRA Entrez,  Source | thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) | 3546 | 0.042 | 0.3037 | No |
44 | CLOCK | CLOCK Entrez,  Source | clock homolog (mouse) | 3722 | 0.040 | 0.2952 | No |
45 | LHX5 | LHX5 Entrez,  Source | LIM homeobox 5 | 3774 | 0.040 | 0.2959 | No |
46 | GRIN2A | GRIN2A Entrez,  Source | glutamate receptor, ionotropic, N-methyl D-aspartate 2A | 3905 | 0.038 | 0.2906 | No |
47 | ATP2B3 | ATP2B3 Entrez,  Source | ATPase, Ca++ transporting, plasma membrane 3 | 4017 | 0.036 | 0.2864 | No |
48 | PLA2G4A | PLA2G4A Entrez,  Source | phospholipase A2, group IVA (cytosolic, calcium-dependent) | 4307 | 0.033 | 0.2684 | No |
49 | ISL1 | ISL1 Entrez,  Source | ISL1 transcription factor, LIM/homeodomain, (islet-1) | 4469 | 0.030 | 0.2598 | No |
50 | RNF12 | RNF12 Entrez,  Source | ring finger protein 12 | 4542 | 0.030 | 0.2578 | No |
51 | SLC12A2 | SLC12A2 Entrez,  Source | solute carrier family 12 (sodium/potassium/chloride transporters), member 2 | 4563 | 0.029 | 0.2597 | No |
52 | ASPA | ASPA Entrez,  Source | aspartoacylase (Canavan disease) | 4645 | 0.028 | 0.2569 | No |
53 | TBXAS1 | TBXAS1 Entrez,  Source | thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A) | 4744 | 0.027 | 0.2527 | No |
54 | PPP2R2B | PPP2R2B Entrez,  Source | protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform | 4958 | 0.024 | 0.2395 | No |
55 | F13A1 | F13A1 Entrez,  Source | coagulation factor XIII, A1 polypeptide | 5027 | 0.023 | 0.2371 | No |
56 | ZFHX1B | ZFHX1B Entrez,  Source | zinc finger homeobox 1b | 5318 | 0.020 | 0.2175 | No |
57 | SFRS7 | SFRS7 Entrez,  Source | splicing factor, arginine/serine-rich 7, 35kDa | 5474 | 0.019 | 0.2080 | No |
58 | KCNK12 | KCNK12 Entrez,  Source | potassium channel, subfamily K, member 12 | 5747 | 0.015 | 0.1893 | No |
59 | SLC13A2 | SLC13A2 Entrez,  Source | solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 | 5825 | 0.015 | 0.1852 | No |
60 | SLC7A13 | SLC7A13 Entrez,  Source | solute carrier family 7, (cationic amino acid transporter, y+ system) member 13 | 5935 | 0.013 | 0.1785 | No |
61 | RPL35A | RPL35A Entrez,  Source | ribosomal protein L35a | 6180 | 0.011 | 0.1614 | No |
62 | SOSTDC1 | SOSTDC1 Entrez,  Source | sclerostin domain containing 1 | 6480 | 0.008 | 0.1397 | No |
63 | KCNJ1 | KCNJ1 Entrez,  Source | potassium inwardly-rectifying channel, subfamily J, member 1 | 6556 | 0.007 | 0.1349 | No |
64 | NDNL2 | NDNL2 Entrez,  Source | necdin-like 2 | 6694 | 0.005 | 0.1252 | No |
65 | BUB3 | BUB3 Entrez,  Source | BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) | 6706 | 0.005 | 0.1249 | No |
66 | RAB3IP | RAB3IP Entrez,  Source | RAB3A interacting protein (rabin3) | 6732 | 0.005 | 0.1236 | No |
67 | CDH20 | CDH20 Entrez,  Source | cadherin 20, type 2 | 6816 | 0.004 | 0.1178 | No |
68 | HCN1 | HCN1 Entrez,  Source | hyperpolarization activated cyclic nucleotide-gated potassium channel 1 | 6951 | 0.002 | 0.1080 | No |
69 | APCS | APCS Entrez,  Source | amyloid P component, serum | 7122 | 0.001 | 0.0952 | No |
70 | NLGN2 | NLGN2 Entrez,  Source | neuroligin 2 | 7329 | -0.002 | 0.0799 | No |
71 | SERPINA10 | SERPINA10 Entrez,  Source | serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 | 7408 | -0.003 | 0.0743 | No |
72 | GUCA2A | GUCA2A Entrez,  Source | guanylate cyclase activator 2A (guanylin) | 7579 | -0.005 | 0.0620 | No |
73 | TCF4 | TCF4 Entrez,  Source | transcription factor 4 | 7631 | -0.005 | 0.0587 | No |
74 | TCF1 | TCF1 Entrez,  Source | transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor | 7936 | -0.009 | 0.0368 | No |
75 | AQP4 | AQP4 Entrez,  Source | aquaporin 4 | 8023 | -0.010 | 0.0314 | No |
76 | STC1 | STC1 Entrez,  Source | stanniocalcin 1 | 8140 | -0.011 | 0.0240 | No |
77 | LRRFIP2 | LRRFIP2 Entrez,  Source | leucine rich repeat (in FLII) interacting protein 2 | 8184 | -0.012 | 0.0221 | No |
78 | NCAM1 | NCAM1 Entrez,  Source | neural cell adhesion molecule 1 | 8309 | -0.013 | 0.0143 | No |
79 | NFIX | NFIX Entrez,  Source | nuclear factor I/X (CCAAT-binding transcription factor) | 8634 | -0.017 | -0.0082 | No |
80 | SLC5A1 | SLC5A1 Entrez,  Source | solute carrier family 5 (sodium/glucose cotransporter), member 1 | 8762 | -0.019 | -0.0156 | No |
81 | POU2F1 | POU2F1 Entrez,  Source | POU domain, class 2, transcription factor 1 | 9137 | -0.024 | -0.0411 | No |
82 | NRP1 | NRP1 Entrez,  Source | neuropilin 1 | 9147 | -0.024 | -0.0390 | No |
83 | SLC26A3 | SLC26A3 Entrez,  Source | solute carrier family 26, member 3 | 9250 | -0.025 | -0.0437 | No |
84 | NEO1 | NEO1 Entrez,  Source | neogenin homolog 1 (chicken) | 9608 | -0.031 | -0.0671 | No |
85 | SLC7A9 | SLC7A9 Entrez,  Source | solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 | 9724 | -0.032 | -0.0720 | No |
86 | ZFP36L1 | ZFP36L1 Entrez,  Source | zinc finger protein 36, C3H type-like 1 | 10023 | -0.037 | -0.0902 | No |
87 | BACE2 | BACE2 Entrez,  Source | beta-site APP-cleaving enzyme 2 | 10308 | -0.042 | -0.1068 | No |
88 | TCF2 | TCF2 Entrez,  Source | transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor | 10435 | -0.044 | -0.1111 | No |
89 | POU3F3 | POU3F3 Entrez,  Source | POU domain, class 3, transcription factor 3 | 10454 | -0.044 | -0.1073 | No |
90 | SFRS12 | SFRS12 Entrez,  Source | splicing factor, arginine/serine-rich 12 | 10579 | -0.047 | -0.1112 | No |
91 | GPX1 | GPX1 Entrez,  Source | glutathione peroxidase 1 | 10706 | -0.050 | -0.1149 | No |
92 | TINAG | TINAG Entrez,  Source | tubulointerstitial nephritis antigen | 10796 | -0.051 | -0.1156 | No |
93 | MXI1 | MXI1 Entrez,  Source | MAX interactor 1 | 10848 | -0.053 | -0.1133 | No |
94 | TLE4 | TLE4 Entrez,  Source | transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) | 11148 | -0.059 | -0.1289 | No |
95 | PHLDB1 | PHLDB1 Entrez,  Source | pleckstrin homology-like domain, family B, member 1 | 11311 | -0.063 | -0.1338 | No |
96 | CAST | CAST Entrez,  Source | calpastatin | 11630 | -0.073 | -0.1492 | No |
97 | RNASE4 | RNASE4 Entrez,  Source | ribonuclease, RNase A family, 4 | 11851 | -0.081 | -0.1563 | No |
98 | PLS3 | PLS3 Entrez,  Source | plastin 3 (T isoform) | 12156 | -0.094 | -0.1682 | No |
99 | FOXA2 | FOXA2 Entrez,  Source | forkhead box A2 | 12373 | -0.109 | -0.1717 | No |
100 | PBX2 | PBX2 Entrez,  Source | pre-B-cell leukemia transcription factor 2 | 12471 | -0.116 | -0.1655 | No |
101 | HAVCR1 | HAVCR1 Entrez,  Source | hepatitis A virus cellular receptor 1 | 12662 | -0.131 | -0.1645 | No |
102 | SSH3 | SSH3 Entrez,  Source | slingshot homolog 3 (Drosophila) | 12854 | -0.157 | -0.1605 | No |
103 | CDH17 | CDH17 Entrez,  Source | cadherin 17, LI cadherin (liver-intestine) | 13046 | -0.205 | -0.1509 | No |
104 | SLC22A8 | SLC22A8 Entrez,  Source | solute carrier family 22 (organic anion transporter), member 8 | 13082 | -0.223 | -0.1273 | No |
105 | RASA2 | RASA2 Entrez,  Source | RAS p21 protein activator 2 | 13127 | -0.246 | -0.1018 | No |
106 | FST | FST Entrez,  Source | follistatin | 13176 | -0.277 | -0.0729 | No |
107 | ARHGAP24 | ARHGAP24 Entrez,  Source | Rho GTPase activating protein 24 | 13255 | -0.362 | -0.0363 | No |
108 | APAF1 | APAF1 Entrez,  Source | apoptotic peptidase activating factor | 13256 | -0.365 | 0.0065 | No |