Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_48h_versus_single_gel_48h.class.cls
#double_gel_48h_versus_single_gel_48h_repos
Phenotypeclass.cls#double_gel_48h_versus_single_gel_48h_repos
Upregulated in classsingle_gel_48h
GeneSetWGGAATGY_V$TEF1_Q6
Enrichment Score (ES)-0.48969403
Normalized Enrichment Score (NES)-1.9407922
Nominal p-value0.0
FDR q-value0.015312779
FWER p-Value0.443
Table: GSEA Results Summary



Fig 1: Enrichment plot: WGGAATGY_V$TEF1_Q6   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CNTN6CNTN6
Entrez,  Source
contactin 61770.1810.0003No
2COL5A3COL5A3
Entrez,  Source
collagen, type V, alpha 32850.1510.0037No
3FGFR2FGFR2
Entrez,  Source
ffer syndrome, Jackson-Weiss syndrome)4190.1330.0037No
4SCNN1ASCNN1A
Entrez,  Source
sodium channel, nonvoltage-gated 1 alpha6160.117-0.0022No
5PDE1APDE1A
Entrez,  Source
phosphodiesterase 1A, calmodulin-dependent7010.112-0.0001No
6HSPB2HSPB2
Entrez,  Source
heat shock 27kDa protein 210280.096-0.0175No
7BCL11ABCL11A
Entrez,  Source
B-cell CLL/lymphoma 11A (zinc finger protein)10530.095-0.0121No
8SYT2SYT2
Entrez,  Source
synaptotagmin II12200.089-0.0180No
9DDIT3DDIT3
Entrez,  Source
DNA-damage-inducible transcript 312280.089-0.0118No
10ACSL3ACSL3
Entrez,  Source
acyl-CoA synthetase long-chain family member 312400.088-0.0059No
11FGAFGA
Entrez,  Source
fibrinogen alpha chain12530.088-0.0002No
12FGFR4FGFR4
Entrez,  Source
fibroblast growth factor receptor 414730.080-0.0107No
13ATP5G2ATP5G2
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)16300.076-0.0167No
14BMP4BMP4
Entrez,  Source
bone morphogenetic protein 417270.074-0.0184No
15KLK6KLK6
Entrez,  Source
kallikrein 6 (neurosin, zyme)19010.070-0.0262No
16MAPRE3MAPRE3
Entrez,  Source
microtubule-associated protein, RP/EB family, member 319190.070-0.0222No
17DMDDMD
Entrez,  Source
dystrophin (muscular dystrophy, Duchenne and Becker types)19340.070-0.0180No
18KCNH2KCNH2
Entrez,  Source
potassium voltage-gated channel, subfamily H (eag-related), member 219710.069-0.0155No
19MID1MID1
Entrez,  Source
midline 1 (Opitz/BBB syndrome)20460.067-0.0160No
20MYH6MYH6
Entrez,  Source
myosin, heavy chain 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)20660.067-0.0124No
21MRGPRFMRGPRF
Entrez,  Source
MAS-related GPR, member F21770.064-0.0159No
22CHRNA1CHRNA1
Entrez,  Source
cholinergic receptor, nicotinic, alpha 1 (muscle)21790.064-0.0111No
23TSPYL4TSPYL4
Entrez,  Source
TSPY-like 423080.062-0.0161No
24SHC1SHC1
Entrez,  Source
SHC (Src homology 2 domain containing) transforming protein 124170.060-0.0197No
25SPARCSPARC
Entrez,  Source
secreted protein, acidic, cysteine-rich (osteonectin)25880.057-0.0283No
26GLP2RGLP2R
Entrez,  Source
glucagon-like peptide 2 receptor27120.055-0.0335No
27CLDN16CLDN16
Entrez,  Source
claudin 1627160.055-0.0295No
28RGS3RGS3
Entrez,  Source
regulator of G-protein signalling 327200.055-0.0256No
29LIFRLIFR
Entrez,  Source
leukemia inhibitory factor receptor alpha28590.052-0.0321No
30SLC5A2SLC5A2
Entrez,  Source
solute carrier family 5 (sodium/glucose cotransporter), member 235300.043-0.0797No
31PDGFRAPDGFRA
Entrez,  Source
platelet-derived growth factor receptor, alpha polypeptide35700.042-0.0794No
32ATF4ATF4
Entrez,  Source
activating transcription factor 4 (tax-responsive enhancer element B67)35790.042-0.0769No
33NOTCH2NOTCH2
Entrez,  Source
Notch homolog 2 (Drosophila)36520.041-0.0792No
34MDKMDK
Entrez,  Source
midkine (neurite growth-promoting factor 2)36660.041-0.0771No
35KCNJ13KCNJ13
Entrez,  Source
potassium inwardly-rectifying channel, subfamily J, member 1337610.040-0.0812No
36BMPR2BMPR2
Entrez,  Source
bone morphogenetic protein receptor, type II (serine/threonine kinase)39970.036-0.0963No
37MPZMPZ
Entrez,  Source
myelin protein zero (Charcot-Marie-Tooth neuropathy 1B)39980.036-0.0935No
38SEC14L3SEC14L3
Entrez,  Source
SEC14-like 3 (S. cerevisiae)40460.036-0.0944No
39SLC12A5SLC12A5
Entrez,  Source
solute carrier family 12, (potassium-chloride transporter) member 541120.035-0.0966No
40SIPA1SIPA1
Entrez,  Source
signal-induced proliferation-associated gene 141210.035-0.0946No
41FSTL1FSTL1
Entrez,  Source
follistatin-like 141790.034-0.0963No
42DDX3XDDX3X
Entrez,  Source
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked43290.032-0.1052No
43MYH7MYH7
Entrez,  Source
myosin, heavy chain 7, cardiac muscle, beta44540.031-0.1123No
44HAND2HAND2
Entrez,  Source
heart and neural crest derivatives expressed 246060.029-0.1216No
45ATRNATRN
Entrez,  Source
attractin46560.028-0.1232No
46MUSKMUSK
Entrez,  Source
muscle, skeletal, receptor tyrosine kinase47000.028-0.1243No
47PTHR1PTHR1
Entrez,  Source
parathyroid hormone receptor 148330.026-0.1324No
48GABRB1GABRB1
Entrez,  Source
gamma-aminobutyric acid (GABA) A receptor, beta 148470.026-0.1314No
49PROK2PROK2
Entrez,  Source
prokineticin 248830.025-0.1321No
50JUNDJUND
Entrez,  Source
jun D proto-oncogene48840.025-0.1302No
51NOGNOG
Entrez,  Source
noggin49130.025-0.1304No
52MLLT3MLLT3
Entrez,  Source
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 350050.024-0.1355No
53IL6STIL6ST
Entrez,  Source
interleukin 6 signal transducer (gp130, oncostatin M receptor)52340.021-0.1512No
54TNNT2TNNT2
Entrez,  Source
troponin T type 2 (cardiac)53340.020-0.1572No
55MGLLMGLL
Entrez,  Source
monoglyceride lipase54000.019-0.1607No
56SYT8SYT8
Entrez,  Source
synaptotagmin VIII54050.019-0.1595No
57NTF5NTF5
Entrez,  Source
neurotrophin 5 (neurotrophin 4/5)54660.019-0.1627No
58ADPRHL1ADPRHL1
Entrez,  Source
ADP-ribosylhydrolase like 154770.019-0.1620No
59RESTREST
Entrez,  Source
RE1-silencing transcription factor55660.018-0.1674No
60OTX2OTX2
Entrez,  Source
orthodenticle homolog 2 (Drosophila)56330.017-0.1711No
61EHD1EHD1
Entrez,  Source
EH-domain containing 156790.016-0.1733No
62ELF3ELF3
Entrez,  Source
E74-like factor 3 (ets domain transcription factor, epithelial-specific )57400.016-0.1766No
63SCN8ASCN8A
Entrez,  Source
sodium channel, voltage gated, type VIII, alpha58560.014-0.1843No
64IL17REIL17RE
Entrez,  Source
interleukin 17 receptor E58910.014-0.1858No
65CDH3CDH3
Entrez,  Source
cadherin 3, type 1, P-cadherin (placental)59050.014-0.1857No
66KCNE2KCNE2
Entrez,  Source
potassium voltage-gated channel, Isk-related family, member 260320.012-0.1943No
67ERGERG
Entrez,  Source
v-ets erythroblastosis virus E26 oncogene homolog (avian)62020.011-0.2063No
68SOSTDC1SOSTDC1
Entrez,  Source
sclerostin domain containing 164800.008-0.2268No
69CHD4CHD4
Entrez,  Source
chromodomain helicase DNA binding protein 465290.007-0.2298No
70TRPC4TRPC4
Entrez,  Source
transient receptor potential cation channel, subfamily C, member 465320.007-0.2295No
71AP2M1AP2M1
Entrez,  Source
adaptor-related protein complex 2, mu 1 subunit67390.005-0.2447No
72PTPRJPTPRJ
Entrez,  Source
protein tyrosine phosphatase, receptor type, J67410.005-0.2444No
73HAPLN1HAPLN1
Entrez,  Source
hyaluronan and proteoglycan link protein 168550.004-0.2527No
74CACNA1GCACNA1G
Entrez,  Source
calcium channel, voltage-dependent, alpha 1G subunit69250.003-0.2577No
75MAPK10MAPK10
Entrez,  Source
mitogen-activated protein kinase 1069620.002-0.2603No
76NR4A1NR4A1
Entrez,  Source
nuclear receptor subfamily 4, group A, member 169920.002-0.2623No
77CDKN2CCDKN2C
Entrez,  Source
cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)71600.000-0.2750No
78FGF13FGF13
Entrez,  Source
fibroblast growth factor 137212-0.000-0.2788No
79PTPN11PTPN11
Entrez,  Source
protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)7325-0.002-0.2872No
80APOEAPOE
Entrez,  Source
apolipoprotein E7411-0.003-0.2934No
81CDK2CDK2
Entrez,  Source
cyclin-dependent kinase 27469-0.003-0.2975No
82INHBAINHBA
Entrez,  Source
inhibin, beta A (activin A, activin AB alpha polypeptide)7648-0.005-0.3106No
83UNC13DUNC13D
Entrez,  Source
unc-13 homolog D (C. elegans)7780-0.007-0.3200No
84SLC16A8SLC16A8
Entrez,  Source
solute carrier family 16, member 8 (monocarboxylic acid transporter 3)8019-0.010-0.3374No
85APPBP2APPBP2
Entrez,  Source
amyloid beta precursor protein (cytoplasmic tail) binding protein 28474-0.015-0.3706No
86BTF3BTF3
Entrez,  Source
basic transcription factor 38517-0.016-0.3726No
87CDK6CDK6
Entrez,  Source
cyclin-dependent kinase 68604-0.017-0.3779No
88GDI1GDI1
Entrez,  Source
GDP dissociation inhibitor 18961-0.021-0.4033No
89ZIC1ZIC1
Entrez,  Source
Zic family member 1 (odd-paired homolog, Drosophila)8976-0.022-0.4027No
90PGAM2PGAM2
Entrez,  Source
phosphoglycerate mutase 2 (muscle)9063-0.023-0.4075No
91NRG2NRG2
Entrez,  Source
neuregulin 29186-0.024-0.4149No
92CNN3CNN3
Entrez,  Source
calponin 3, acidic9383-0.027-0.4277No
93ID2ID2
Entrez,  Source
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein9384-0.027-0.4256No
94PHF12PHF12
Entrez,  Source
PHD finger protein 129599-0.030-0.4395No
95HDGFHDGF
Entrez,  Source
hepatoma-derived growth factor (high-mobility group protein 1-like)9633-0.031-0.4397No
96SOSTSOST
Entrez,  Source
sclerosteosis9770-0.033-0.4475No
97PGFPGF
Entrez,  Source
placental growth factor, vascular endothelial growth factor-related protein9927-0.035-0.4567No
98ITGB4ITGB4
Entrez,  Source
integrin, beta 49935-0.035-0.4545No
99MLL5MLL5
Entrez,  Source
myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)10080-0.038-0.4625No
100GREM1GREM1
Entrez,  Source
gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis)10120-0.039-0.4626No
101RNF2RNF2
Entrez,  Source
ring finger protein 210149-0.039-0.4617No
102ITPR3ITPR3
Entrez,  Source
inositol 1,4,5-triphosphate receptor, type 310318-0.042-0.4713No
103SPRED1SPRED1
Entrez,  Source
sprouty-related, EVH1 domain containing 110322-0.042-0.4683No
104GHRLGHRL
Entrez,  Source
ghrelin/obestatin preprohormone10393-0.043-0.4703No
105RPH3ALRPH3AL
Entrez,  Source
rabphilin 3A-like (without C2 domains)10397-0.043-0.4673No
106KATNB1KATNB1
Entrez,  Source
katanin p80 (WD repeat containing) subunit B 110476-0.045-0.4698No
107ITGB1ITGB1
Entrez,  Source
integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)10521-0.046-0.4697No
108UPK1BUPK1B
Entrez,  Source
uroplakin 1B10598-0.047-0.4719No
109SMARCA2SMARCA2
Entrez,  Source
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 210834-0.052-0.4857Yes
110PRKCDBPPRKCDBP
Entrez,  Source
protein kinase C, delta binding protein10837-0.052-0.4819Yes
111NR4A3NR4A3
Entrez,  Source
nuclear receptor subfamily 4, group A, member 310905-0.054-0.4829Yes
112ERBB2ERBB2
Entrez,  Source
v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)10906-0.054-0.4788Yes
113RAB11BRAB11B
Entrez,  Source
RAB11B, member RAS oncogene family10950-0.055-0.4779Yes
114MSX2MSX2
Entrez,  Source
msh homeobox homolog 2 (Drosophila)11089-0.058-0.4840Yes
115TMOD3TMOD3
Entrez,  Source
tropomodulin 3 (ubiquitous)11122-0.058-0.4820Yes
116SMAD3SMAD3
Entrez,  Source
SMAD, mothers against DPP homolog 3 (Drosophila)11131-0.059-0.4781Yes
117PIK3C3PIK3C3
Entrez,  Source
phosphoinositide-3-kinase, class 311193-0.060-0.4782Yes
118PTMSPTMS
Entrez,  Source
parathymosin11215-0.061-0.4752Yes
119IER5IER5
Entrez,  Source
immediate early response 511328-0.063-0.4789Yes
120KLHDC3KLHDC3
Entrez,  Source
kelch domain containing 311338-0.063-0.4747Yes
121ESR1ESR1
Entrez,  Source
estrogen receptor 111349-0.064-0.4706Yes
122IGFBP6IGFBP6
Entrez,  Source
insulin-like growth factor binding protein 611430-0.066-0.4717Yes
123SLC12A4SLC12A4
Entrez,  Source
solute carrier family 12 (potassium/chloride transporters), member 411533-0.070-0.4741Yes
124AVPI1AVPI1
Entrez,  Source
arginine vasopressin-induced 111561-0.070-0.4708Yes
125HMGA1HMGA1
Entrez,  Source
high mobility group AT-hook 111574-0.071-0.4663Yes
126NRG1NRG1
Entrez,  Source
neuregulin 111626-0.073-0.4647Yes
127DUSP7DUSP7
Entrez,  Source
dual specificity phosphatase 711779-0.078-0.4703Yes
128ANGPT1ANGPT1
Entrez,  Source
angiopoietin 111939-0.085-0.4759Yes
129SLC9A3R1SLC9A3R1
Entrez,  Source
solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 112048-0.089-0.4773Yes
130PLS3PLS3
Entrez,  Source
plastin 3 (T isoform)12156-0.094-0.4782Yes
131FRAG1FRAG1
Entrez,  Source
-12172-0.095-0.4722Yes
132NFKB2NFKB2
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)12192-0.096-0.4663Yes
133DSPDSP
Entrez,  Source
desmoplakin12225-0.098-0.4612Yes
134PRKCIPRKCI
Entrez,  Source
protein kinase C, iota12255-0.100-0.4559Yes
135PIAS3PIAS3
Entrez,  Source
protein inhibitor of activated STAT, 312301-0.103-0.4514Yes
136TGIFTGIF
Entrez,  Source
TGFB-induced factor (TALE family homeobox)12388-0.110-0.4496Yes
137TMSB10TMSB10
Entrez,  Source
thymosin, beta 1012400-0.111-0.4420Yes
138RHBDF1RHBDF1
Entrez,  Source
rhomboid 5 homolog 1 (Drosophila)12464-0.115-0.4380Yes
139JMJD1CJMJD1C
Entrez,  Source
jumonji domain containing 1C12465-0.115-0.4292Yes
140RAB30RAB30
Entrez,  Source
RAB30, member RAS oncogene family12489-0.117-0.4221Yes
141LAMB2LAMB2
Entrez,  Source
laminin, beta 2 (laminin S)12523-0.119-0.4156Yes
142KIFC3KIFC3
Entrez,  Source
kinesin family member C312529-0.120-0.4069Yes
143LMNALMNA
Entrez,  Source
lamin A/C12554-0.122-0.3994Yes
144CYR61CYR61
Entrez,  Source
cysteine-rich, angiogenic inducer, 6112557-0.122-0.3903Yes
145GPRC5CGPRC5C
Entrez,  Source
G protein-coupled receptor, family C, group 5, member C12581-0.124-0.3826Yes
146ROCK2ROCK2
Entrez,  Source
Rho-associated, coiled-coil containing protein kinase 212599-0.125-0.3744Yes
147JUBJUB
Entrez,  Source
jub, ajuba homolog (Xenopus laevis)12688-0.133-0.3710Yes
148NESNES
Entrez,  Source
nestin12908-0.167-0.3749Yes
149TPM1TPM1
Entrez,  Source
tropomyosin 1 (alpha)12980-0.185-0.3663Yes
150EDN1EDN1
Entrez,  Source
endothelin 113031-0.199-0.3549Yes
151GPM6AGPM6A
Entrez,  Source
glycoprotein M6A13085-0.224-0.3419Yes
152MYADMMYADM
Entrez,  Source
myeloid-associated differentiation marker13119-0.239-0.3263Yes
153PDGFAPDGFA
Entrez,  Source
platelet-derived growth factor alpha polypeptide13145-0.254-0.3088Yes
154CRYABCRYAB
Entrez,  Source
crystallin, alpha B13206-0.298-0.2908Yes
155LAMB3LAMB3
Entrez,  Source
laminin, beta 313233-0.329-0.2678Yes
156DDR1DDR1
Entrez,  Source
discoidin domain receptor family, member 113240-0.338-0.2425Yes
157ARHGAP24ARHGAP24
Entrez,  Source
Rho GTPase activating protein 2413255-0.362-0.2161Yes
158POPDC2POPDC2
Entrez,  Source
popeye domain containing 213266-0.379-0.1880Yes
159LAMC2LAMC2
Entrez,  Source
laminin, gamma 213270-0.390-0.1587Yes
160SLC31A2SLC31A2
Entrez,  Source
solute carrier family 31 (copper transporters), member 213300-0.468-0.1253Yes
161CTGFCTGF
Entrez,  Source
connective tissue growth factor13313-0.503-0.0880Yes
162ACTA1ACTA1
Entrez,  Source
actin, alpha 1, skeletal muscle13342-1.187-0.0000Yes
Table: GSEA details [plain text format]



Fig 2: WGGAATGY_V$TEF1_Q6   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: WGGAATGY_V$TEF1_Q6: Random ES distribution   
Gene set null distribution of ES for WGGAATGY_V$TEF1_Q6