Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_72h_versus_single_gel_72h.class.cls #double_gel_72h_versus_single_gel_72h_repos |
| Phenotype | class.cls#double_gel_72h_versus_single_gel_72h_repos |
| Upregulated in class | single_gel_72h |
| GeneSet | GGTGTGT,MIR-329 |
| Enrichment Score (ES) | -0.56467736 |
| Normalized Enrichment Score (NES) | -1.724579 |
| Nominal p-value | 0.0052173915 |
| FDR q-value | 0.054247513 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | SF4 | SF4 Entrez, Source | splicing factor 4 | 438 | 0.219 | 0.0051 | No |
| 2 | RXRG | RXRG Entrez, Source | retinoid X receptor, gamma | 499 | 0.203 | 0.0358 | No |
| 3 | NRBF2 | NRBF2 Entrez, Source | nuclear receptor binding factor 2 | 803 | 0.163 | 0.0413 | No |
| 4 | THRB | THRB Entrez, Source | thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian) | 2315 | 0.085 | -0.0576 | No |
| 5 | STC2 | STC2 Entrez, Source | stanniocalcin 2 | 2436 | 0.082 | -0.0525 | No |
| 6 | PTBP2 | PTBP2 Entrez, Source | polypyrimidine tract binding protein 2 | 3139 | 0.064 | -0.0943 | No |
| 7 | BLCAP | BLCAP Entrez, Source | bladder cancer associated protein | 3276 | 0.061 | -0.0939 | No |
| 8 | IL6ST | IL6ST Entrez, Source | interleukin 6 signal transducer (gp130, oncostatin M receptor) | 3732 | 0.051 | -0.1193 | No |
| 9 | ADRA2B | ADRA2B Entrez, Source | adrenergic, alpha-2B-, receptor | 3846 | 0.049 | -0.1192 | No |
| 10 | GLRA2 | GLRA2 Entrez, Source | glycine receptor, alpha 2 | 4090 | 0.045 | -0.1297 | No |
| 11 | CLTB | CLTB Entrez, Source | clathrin, light chain (Lcb) | 5046 | 0.028 | -0.1966 | No |
| 12 | TMED9 | TMED9 Entrez, Source | transmembrane emp24 protein transport domain containing 9 | 5270 | 0.025 | -0.2090 | No |
| 13 | TARDBP | TARDBP Entrez, Source | TAR DNA binding protein | 5332 | 0.024 | -0.2094 | No |
| 14 | PDE5A | PDE5A Entrez, Source | phosphodiesterase 5A, cGMP-specific | 5702 | 0.019 | -0.2339 | No |
| 15 | PCDHA13 | PCDHA13 Entrez, Source | protocadherin alpha 13 | 5929 | 0.015 | -0.2483 | No |
| 16 | PCDHA11 | PCDHA11 Entrez, Source | protocadherin alpha 11 | 6282 | 0.010 | -0.2730 | No |
| 17 | DNM3 | DNM3 Entrez, Source | dynamin 3 | 7059 | -0.001 | -0.3312 | No |
| 18 | EIF4G1 | EIF4G1 Entrez, Source | eukaryotic translation initiation factor 4 gamma, 1 | 7196 | -0.003 | -0.3409 | No |
| 19 | H3F3B | H3F3B Entrez, Source | H3 histone, family 3B (H3.3B) | 8249 | -0.019 | -0.4167 | No |
| 20 | CSNK1G3 | CSNK1G3 Entrez, Source | casein kinase 1, gamma 3 | 8705 | -0.026 | -0.4463 | No |
| 21 | WDFY1 | WDFY1 Entrez, Source | WD repeat and FYVE domain containing 1 | 8732 | -0.027 | -0.4436 | No |
| 22 | RALA | RALA Entrez, Source | v-ral simian leukemia viral oncogene homolog A (ras related) | 8799 | -0.028 | -0.4436 | No |
| 23 | ESRRG | ESRRG Entrez, Source | estrogen-related receptor gamma | 9512 | -0.042 | -0.4899 | No |
| 24 | GGA1 | GGA1 Entrez, Source | golgi associated, gamma adaptin ear containing, ARF binding protein 1 | 9813 | -0.048 | -0.5041 | No |
| 25 | PDE4D | PDE4D Entrez, Source | phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) | 10306 | -0.059 | -0.5308 | No |
| 26 | PRPF4B | PRPF4B Entrez, Source | PRP4 pre-mRNA processing factor 4 homolog B (yeast) | 10586 | -0.066 | -0.5402 | No |
| 27 | NRG1 | NRG1 Entrez, Source | neuregulin 1 | 10701 | -0.070 | -0.5366 | No |
| 28 | TOB2 | TOB2 Entrez, Source | transducer of ERBB2, 2 | 10718 | -0.070 | -0.5256 | No |
| 29 | SLC25A3 | SLC25A3 Entrez, Source | solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 | 11129 | -0.083 | -0.5420 | No |
| 30 | ATXN1 | ATXN1 Entrez, Source | ataxin 1 | 11431 | -0.096 | -0.5479 | Yes |
| 31 | IGSF4 | IGSF4 Entrez, Source | immunoglobulin superfamily, member 4 | 11649 | -0.107 | -0.5457 | Yes |
| 32 | CLDND1 | CLDND1 Entrez, Source | claudin domain containing 1 | 11831 | -0.115 | -0.5393 | Yes |
| 33 | SMAD2 | SMAD2 Entrez, Source | SMAD, mothers against DPP homolog 2 (Drosophila) | 11923 | -0.120 | -0.5254 | Yes |
| 34 | RNF38 | RNF38 Entrez, Source | ring finger protein 38 | 11931 | -0.120 | -0.5050 | Yes |
| 35 | BMPR2 | BMPR2 Entrez, Source | bone morphogenetic protein receptor, type II (serine/threonine kinase) | 12152 | -0.135 | -0.4981 | Yes |
| 36 | NFASC | NFASC Entrez, Source | neurofascin homolog (chicken) | 12327 | -0.150 | -0.4851 | Yes |
| 37 | MARK2 | MARK2 Entrez, Source | MAP/microtubule affinity-regulating kinase 2 | 12371 | -0.155 | -0.4614 | Yes |
| 38 | PCDHA4 | PCDHA4 Entrez, Source | protocadherin alpha 4 | 12482 | -0.168 | -0.4405 | Yes |
| 39 | CRMP1 | CRMP1 Entrez, Source | collapsin response mediator protein 1 | 12762 | -0.215 | -0.4241 | Yes |
| 40 | DLGAP4 | DLGAP4 Entrez, Source | discs, large (Drosophila) homolog-associated protein 4 | 12995 | -0.288 | -0.3916 | Yes |
| 41 | AKAP2 | AKAP2 Entrez, Source | A kinase (PRKA) anchor protein 2 | 13107 | -0.362 | -0.3370 | Yes |
| 42 | DPYSL3 | DPYSL3 Entrez, Source | dihydropyrimidinase-like 3 | 13155 | -0.408 | -0.2697 | Yes |
| 43 | PAM | PAM Entrez, Source | peptidylglycine alpha-amidating monooxygenase | 13160 | -0.412 | -0.1983 | Yes |
| 44 | TPBG | TPBG Entrez, Source | trophoblast glycoprotein | 13238 | -0.524 | -0.1131 | Yes |
| 45 | AHNAK | AHNAK Entrez, Source | AHNAK nucleoprotein (desmoyokin) | 13286 | -0.695 | 0.0042 | Yes |
