Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_72h_versus_single_gel_72h.class.cls #double_gel_72h_versus_single_gel_72h_repos |
| Phenotype | class.cls#double_gel_72h_versus_single_gel_72h_repos |
| Upregulated in class | single_gel_72h |
| GeneSet | IDX_TSA_DN_CLUSTER2 |
| Enrichment Score (ES) | -0.7206526 |
| Normalized Enrichment Score (NES) | -2.226442 |
| Nominal p-value | 0.0 |
| FDR q-value | 5.305816E-4 |
| FWER p-Value | 0.0030 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | VCAM1 | VCAM1 Entrez, Source | vascular cell adhesion molecule 1 | 49 | 0.501 | 0.0445 | No |
| 2 | NQO2 | NQO2 Entrez, Source | NAD(P)H dehydrogenase, quinone 2 | 658 | 0.179 | 0.0159 | No |
| 3 | FGF7 | FGF7 Entrez, Source | fibroblast growth factor 7 (keratinocyte growth factor) | 1129 | 0.135 | -0.0064 | No |
| 4 | PTGIS | PTGIS Entrez, Source | prostaglandin I2 (prostacyclin) synthase | 1288 | 0.125 | -0.0063 | No |
| 5 | SERPINF1 | SERPINF1 Entrez, Source | serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 | 2345 | 0.084 | -0.0777 | No |
| 6 | PDPN | PDPN Entrez, Source | podoplanin | 4040 | 0.046 | -0.2007 | No |
| 7 | SLC38A4 | SLC38A4 Entrez, Source | solute carrier family 38, member 4 | 4109 | 0.044 | -0.2015 | No |
| 8 | SLC7A5 | SLC7A5 Entrez, Source | solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 | 4470 | 0.038 | -0.2249 | No |
| 9 | MAP1LC3B | MAP1LC3B Entrez, Source | microtubule-associated protein 1 light chain 3 beta | 4882 | 0.031 | -0.2528 | No |
| 10 | TWIST2 | TWIST2 Entrez, Source | twist homolog 2 (Drosophila) | 5194 | 0.026 | -0.2737 | No |
| 11 | NCAM1 | NCAM1 Entrez, Source | neural cell adhesion molecule 1 | 5294 | 0.025 | -0.2788 | No |
| 12 | ZFP36L2 | ZFP36L2 Entrez, Source | zinc finger protein 36, C3H type-like 2 | 6635 | 0.005 | -0.3791 | No |
| 13 | SLC1A4 | SLC1A4 Entrez, Source | solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 | 7057 | -0.001 | -0.4106 | No |
| 14 | TINP1 | TINP1 Entrez, Source | - | 8023 | -0.015 | -0.4818 | No |
| 15 | TES | TES Entrez, Source | testis derived transcript (3 LIM domains) | 8843 | -0.029 | -0.5406 | No |
| 16 | SCPEP1 | SCPEP1 Entrez, Source | serine carboxypeptidase 1 | 9436 | -0.040 | -0.5812 | No |
| 17 | LAMP2 | LAMP2 Entrez, Source | lysosomal-associated membrane protein 2 | 9636 | -0.044 | -0.5920 | No |
| 18 | BAX | BAX Entrez, Source | BCL2-associated X protein | 9773 | -0.047 | -0.5976 | No |
| 19 | PRDX4 | PRDX4 Entrez, Source | peroxiredoxin 4 | 10020 | -0.053 | -0.6111 | No |
| 20 | PLXNB2 | PLXNB2 Entrez, Source | plexin B2 | 10304 | -0.059 | -0.6267 | No |
| 21 | PLD3 | PLD3 Entrez, Source | phospholipase D family, member 3 | 10363 | -0.061 | -0.6252 | No |
| 22 | SERTAD1 | SERTAD1 Entrez, Source | SERTA domain containing 1 | 11307 | -0.091 | -0.6874 | No |
| 23 | TMSB10 | TMSB10 Entrez, Source | thymosin, beta 10 | 11750 | -0.111 | -0.7099 | Yes |
| 24 | SMAD6 | SMAD6 Entrez, Source | SMAD, mothers against DPP homolog 6 (Drosophila) | 11893 | -0.118 | -0.7093 | Yes |
| 25 | EMP3 | EMP3 Entrez, Source | epithelial membrane protein 3 | 12012 | -0.126 | -0.7060 | Yes |
| 26 | GNB1 | GNB1 Entrez, Source | guanine nucleotide binding protein (G protein), beta polypeptide 1 | 12099 | -0.132 | -0.6998 | Yes |
| 27 | CD99 | CD99 Entrez, Source | CD99 molecule | 12323 | -0.150 | -0.7022 | Yes |
| 28 | ASAH1 | ASAH1 Entrez, Source | N-acylsphingosine amidohydrolase (acid ceramidase) 1 | 12353 | -0.153 | -0.6896 | Yes |
| 29 | PPGB | PPGB Entrez, Source | protective protein for beta-galactosidase (galactosialidosis) | 12387 | -0.157 | -0.6770 | Yes |
| 30 | MYH9 | MYH9 Entrez, Source | myosin, heavy chain 9, non-muscle | 12456 | -0.165 | -0.6663 | Yes |
| 31 | ACTA2 | ACTA2 Entrez, Source | actin, alpha 2, smooth muscle, aorta | 12537 | -0.177 | -0.6554 | Yes |
| 32 | TSPAN6 | TSPAN6 Entrez, Source | tetraspanin 6 | 12584 | -0.182 | -0.6413 | Yes |
| 33 | ANXA5 | ANXA5 Entrez, Source | annexin A5 | 12706 | -0.206 | -0.6307 | Yes |
| 34 | DSTN | DSTN Entrez, Source | destrin (actin depolymerizing factor) | 12715 | -0.208 | -0.6112 | Yes |
| 35 | CAPG | CAPG Entrez, Source | capping protein (actin filament), gelsolin-like | 12818 | -0.229 | -0.5969 | Yes |
| 36 | CAP1 | CAP1 Entrez, Source | CAP, adenylate cyclase-associated protein 1 (yeast) | 12826 | -0.231 | -0.5752 | Yes |
| 37 | PGCP | PGCP Entrez, Source | - | 12857 | -0.240 | -0.5544 | Yes |
| 38 | LEPROT | LEPROT Entrez, Source | leptin receptor overlapping transcript | 12913 | -0.256 | -0.5339 | Yes |
| 39 | CD276 | CD276 Entrez, Source | CD276 molecule | 13052 | -0.320 | -0.5135 | Yes |
| 40 | ANXA3 | ANXA3 Entrez, Source | annexin A3 | 13069 | -0.331 | -0.4829 | Yes |
| 41 | PDLIM7 | PDLIM7 Entrez, Source | PDZ and LIM domain 7 (enigma) | 13173 | -0.431 | -0.4492 | Yes |
| 42 | RAB31 | RAB31 Entrez, Source | RAB31, member RAS oncogene family | 13187 | -0.451 | -0.4067 | Yes |
| 43 | FXYD5 | FXYD5 Entrez, Source | FXYD domain containing ion transport regulator 5 | 13236 | -0.522 | -0.3602 | Yes |
| 44 | BDNF | BDNF Entrez, Source | brain-derived neurotrophic factor | 13242 | -0.532 | -0.3094 | Yes |
| 45 | PRSS23 | PRSS23 Entrez, Source | protease, serine, 23 | 13276 | -0.650 | -0.2494 | Yes |
| 46 | F2R | F2R Entrez, Source | coagulation factor II (thrombin) receptor | 13282 | -0.665 | -0.1858 | Yes |
| 47 | LOX | LOX Entrez, Source | lysyl oxidase | 13315 | -0.896 | -0.1020 | Yes |
| 48 | MSN | MSN Entrez, Source | moesin | 13329 | -1.080 | 0.0010 | Yes |
