Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_72h_versus_single_gel_72h.class.cls #double_gel_72h_versus_single_gel_72h_repos |
| Phenotype | class.cls#double_gel_72h_versus_single_gel_72h_repos |
| Upregulated in class | single_gel_72h |
| GeneSet | JECHLINGER_EMT_DN |
| Enrichment Score (ES) | -0.62397337 |
| Normalized Enrichment Score (NES) | -1.7865329 |
| Nominal p-value | 0.007707129 |
| FDR q-value | 0.039978918 |
| FWER p-Value | 0.987 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | EGR2 | EGR2 Entrez, Source | early growth response 2 (Krox-20 homolog, Drosophila) | 180 | 0.328 | 0.0506 | No |
| 2 | EGR1 | EGR1 Entrez, Source | early growth response 1 | 437 | 0.219 | 0.0742 | No |
| 3 | TACSTD1 | TACSTD1 Entrez, Source | tumor-associated calcium signal transducer 1 | 1350 | 0.121 | 0.0294 | No |
| 4 | ATF3 | ATF3 Entrez, Source | activating transcription factor 3 | 1413 | 0.118 | 0.0478 | No |
| 5 | TIAM1 | TIAM1 Entrez, Source | T-cell lymphoma invasion and metastasis 1 | 1889 | 0.098 | 0.0312 | No |
| 6 | ITPR1 | ITPR1 Entrez, Source | inositol 1,4,5-triphosphate receptor, type 1 | 2186 | 0.089 | 0.0263 | No |
| 7 | AMD1 | AMD1 Entrez, Source | adenosylmethionine decarboxylase 1 | 2566 | 0.078 | 0.0130 | No |
| 8 | GRB7 | GRB7 Entrez, Source | growth factor receptor-bound protein 7 | 3678 | 0.052 | -0.0602 | No |
| 9 | FBP2 | FBP2 Entrez, Source | fructose-1,6-bisphosphatase 2 | 4892 | 0.031 | -0.1453 | No |
| 10 | PADI2 | PADI2 Entrez, Source | peptidyl arginine deiminase, type II | 5275 | 0.025 | -0.1691 | No |
| 11 | CDH1 | CDH1 Entrez, Source | cadherin 1, type 1, E-cadherin (epithelial) | 5315 | 0.024 | -0.1672 | No |
| 12 | ARHGEF1 | ARHGEF1 Entrez, Source | Rho guanine nucleotide exchange factor (GEF) 1 | 6303 | 0.010 | -0.2395 | No |
| 13 | DUSP1 | DUSP1 Entrez, Source | dual specificity phosphatase 1 | 6673 | 0.004 | -0.2664 | No |
| 14 | ATP1A1 | ATP1A1 Entrez, Source | ATPase, Na+/K+ transporting, alpha 1 polypeptide | 7578 | -0.009 | -0.3326 | No |
| 15 | NUMB | NUMB Entrez, Source | numb homolog (Drosophila) | 7901 | -0.014 | -0.3541 | No |
| 16 | VAMP8 | VAMP8 Entrez, Source | vesicle-associated membrane protein 8 (endobrevin) | 8103 | -0.016 | -0.3660 | No |
| 17 | RARA | RARA Entrez, Source | retinoic acid receptor, alpha | 8106 | -0.016 | -0.3630 | No |
| 18 | STAT5A | STAT5A Entrez, Source | signal transducer and activator of transcription 5A | 8113 | -0.016 | -0.3602 | No |
| 19 | ITGB5 | ITGB5 Entrez, Source | integrin, beta 5 | 8308 | -0.020 | -0.3709 | No |
| 20 | SERPINB5 | SERPINB5 Entrez, Source | serpin peptidase inhibitor, clade B (ovalbumin), member 5 | 9769 | -0.047 | -0.4714 | No |
| 21 | TGM2 | TGM2 Entrez, Source | transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) | 10171 | -0.056 | -0.4906 | No |
| 22 | CTSH | CTSH Entrez, Source | cathepsin H | 10687 | -0.069 | -0.5157 | No |
| 23 | JUP | JUP Entrez, Source | junction plakoglobin | 12003 | -0.125 | -0.5900 | No |
| 24 | MYH9 | MYH9 Entrez, Source | myosin, heavy chain 9, non-muscle | 12456 | -0.165 | -0.5918 | Yes |
| 25 | SGK | SGK Entrez, Source | serum/glucocorticoid regulated kinase | 12735 | -0.210 | -0.5716 | Yes |
| 26 | ACTN4 | ACTN4 Entrez, Source | actinin, alpha 4 | 12871 | -0.243 | -0.5342 | Yes |
| 27 | TIMP3 | TIMP3 Entrez, Source | TIMP metallopeptidase inhibitor 3 (Sorsby fundus dystrophy, pseudoinflammatory) | 12978 | -0.283 | -0.4868 | Yes |
| 28 | HMMR | HMMR Entrez, Source | hyaluronan-mediated motility receptor (RHAMM) | 12987 | -0.285 | -0.4317 | Yes |
| 29 | TGFB3 | TGFB3 Entrez, Source | transforming growth factor, beta 3 | 13210 | -0.480 | -0.3545 | Yes |
| 30 | KITLG | KITLG Entrez, Source | KIT ligand | 13215 | -0.492 | -0.2586 | Yes |
| 31 | CTGF | CTGF Entrez, Source | connective tissue growth factor | 13260 | -0.571 | -0.1502 | Yes |
| 32 | F3 | F3 Entrez, Source | coagulation factor III (thromboplastin, tissue factor) | 13308 | -0.800 | 0.0026 | Yes |
