Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_72h_versus_single_gel_72h.class.cls #double_gel_72h_versus_single_gel_72h_repos |
| Phenotype | class.cls#double_gel_72h_versus_single_gel_72h_repos |
| Upregulated in class | single_gel_72h |
| GeneSet | TGFBETA_C2_UP |
| Enrichment Score (ES) | -0.70012486 |
| Normalized Enrichment Score (NES) | -1.6992506 |
| Nominal p-value | 0.021937843 |
| FDR q-value | 0.06303968 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | ICAM1 | ICAM1 Entrez, Source | intercellular adhesion molecule 1 (CD54), human rhinovirus receptor | 1644 | 0.107 | -0.0829 | No |
| 2 | LRP1 | LRP1 Entrez, Source | low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) | 2212 | 0.088 | -0.0923 | No |
| 3 | DVL1 | DVL1 Entrez, Source | dishevelled, dsh homolog 1 (Drosophila) | 2814 | 0.071 | -0.1105 | No |
| 4 | WNT2B | WNT2B Entrez, Source | wingless-type MMTV integration site family, member 2B | 4771 | 0.033 | -0.2448 | No |
| 5 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 8051 | -0.016 | -0.4849 | No |
| 6 | ITGB2 | ITGB2 Entrez, Source | integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) | 8281 | -0.020 | -0.4947 | No |
| 7 | ARHGDIA | ARHGDIA Entrez, Source | Rho GDP dissociation inhibitor (GDI) alpha | 8656 | -0.026 | -0.5131 | No |
| 8 | MMP3 | MMP3 Entrez, Source | matrix metallopeptidase 3 (stromelysin 1, progelatinase) | 8953 | -0.031 | -0.5235 | No |
| 9 | RHOG | RHOG Entrez, Source | ras homolog gene family, member G (rho G) | 9303 | -0.038 | -0.5353 | No |
| 10 | CDH6 | CDH6 Entrez, Source | cadherin 6, type 2, K-cadherin (fetal kidney) | 9721 | -0.046 | -0.5492 | No |
| 11 | FN1 | FN1 Entrez, Source | fibronectin 1 | 10062 | -0.053 | -0.5546 | No |
| 12 | JUP | JUP Entrez, Source | junction plakoglobin | 12003 | -0.125 | -0.6528 | Yes |
| 13 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 12541 | -0.177 | -0.6261 | Yes |
| 14 | MMP14 | MMP14 Entrez, Source | matrix metallopeptidase 14 (membrane-inserted) | 12629 | -0.189 | -0.5610 | Yes |
| 15 | TIMP1 | TIMP1 Entrez, Source | TIMP metallopeptidase inhibitor 1 | 13193 | -0.458 | -0.4300 | Yes |
| 16 | MARCKSL1 | MARCKSL1 Entrez, Source | MARCKS-like 1 | 13330 | -1.167 | 0.0009 | Yes |
