Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_72h_versus_single_gel_72h.class.cls #double_gel_72h_versus_single_gel_72h_repos |
Phenotype | class.cls#double_gel_72h_versus_single_gel_72h_repos |
Upregulated in class | single_gel_72h |
GeneSet | V$E2F_Q6 |
Enrichment Score (ES) | -0.502456 |
Normalized Enrichment Score (NES) | -1.7218844 |
Nominal p-value | 0.0047393367 |
FDR q-value | 0.055672184 |
FWER p-Value | 1.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | ALDH6A1 | ALDH6A1 Entrez,  Source | aldehyde dehydrogenase 6 family, member A1 | 445 | 0.217 | -0.0108 | No |
2 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 686 | 0.175 | -0.0106 | No |
3 | MRPL40 | MRPL40 Entrez,  Source | mitochondrial ribosomal protein L40 | 854 | 0.157 | -0.0067 | No |
4 | ATF5 | ATF5 Entrez,  Source | activating transcription factor 5 | 979 | 0.147 | -0.0006 | No |
5 | HTF9C | HTF9C Entrez,  Source | - | 1256 | 0.127 | -0.0082 | No |
6 | NOLC1 | NOLC1 Entrez,  Source | nucleolar and coiled-body phosphoprotein 1 | 1277 | 0.125 | 0.0034 | No |
7 | PCSK1 | PCSK1 Entrez,  Source | proprotein convertase subtilisin/kexin type 1 | 1646 | 0.107 | -0.0131 | No |
8 | UGCGL1 | UGCGL1 Entrez,  Source | UDP-glucose ceramide glucosyltransferase-like 1 | 1741 | 0.104 | -0.0094 | No |
9 | SFRS7 | SFRS7 Entrez,  Source | splicing factor, arginine/serine-rich 7, 35kDa | 2205 | 0.088 | -0.0351 | No |
10 | GRIA4 | GRIA4 Entrez,  Source | glutamate receptor, ionotrophic, AMPA 4 | 2238 | 0.087 | -0.0284 | No |
11 | SLC6A4 | SLC6A4 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 | 2243 | 0.086 | -0.0196 | No |
12 | AK2 | AK2 Entrez,  Source | adenylate kinase 2 | 2453 | 0.081 | -0.0269 | No |
13 | CDC25A | CDC25A Entrez,  Source | cell division cycle 25A | 2527 | 0.079 | -0.0242 | No |
14 | SLC38A1 | SLC38A1 Entrez,  Source | solute carrier family 38, member 1 | 2719 | 0.073 | -0.0309 | No |
15 | HMGN2 | HMGN2 Entrez,  Source | high-mobility group nucleosomal binding domain 2 | 2936 | 0.068 | -0.0401 | No |
16 | SLC9A5 | SLC9A5 Entrez,  Source | solute carrier family 9 (sodium/hydrogen exchanger), member 5 | 3069 | 0.065 | -0.0432 | No |
17 | FMO4 | FMO4 Entrez,  Source | flavin containing monooxygenase 4 | 3098 | 0.064 | -0.0386 | No |
18 | ACO2 | ACO2 Entrez,  Source | aconitase 2, mitochondrial | 3136 | 0.064 | -0.0347 | No |
19 | UNG | UNG Entrez,  Source | uracil-DNA glycosylase | 3161 | 0.063 | -0.0299 | No |
20 | UXT | UXT Entrez,  Source | ubiquitously-expressed transcript | 3680 | 0.052 | -0.0635 | No |
21 | MXD3 | MXD3 Entrez,  Source | MAX dimerization protein 3 | 3701 | 0.052 | -0.0596 | No |
22 | CSPG2 | CSPG2 Entrez,  Source | chondroitin sulfate proteoglycan 2 (versican) | 3728 | 0.051 | -0.0562 | No |
23 | UFD1L | UFD1L Entrez,  Source | ubiquitin fusion degradation 1 like (yeast) | 3750 | 0.051 | -0.0525 | No |
24 | PHF5A | PHF5A Entrez,  Source | PHD finger protein 5A | 3763 | 0.051 | -0.0481 | No |
25 | XTP3TPA | XTP3TPA Entrez,  Source | - | 4144 | 0.044 | -0.0722 | No |
26 | PAX6 | PAX6 Entrez,  Source | paired box gene 6 (aniridia, keratitis) | 4359 | 0.040 | -0.0841 | No |
27 | CORT | CORT Entrez,  Source | cortistatin | 4395 | 0.040 | -0.0826 | No |
28 | ACBD6 | ACBD6 Entrez,  Source | acyl-Coenzyme A binding domain containing 6 | 5066 | 0.028 | -0.1302 | No |
29 | HCN3 | HCN3 Entrez,  Source | hyperpolarization activated cyclic nucleotide-gated potassium channel 3 | 5113 | 0.027 | -0.1308 | No |
30 | HOXC10 | HOXC10 Entrez,  Source | homeobox C10 | 5188 | 0.026 | -0.1336 | No |
31 | NASP | NASP Entrez,  Source | nuclear autoantigenic sperm protein (histone-binding) | 5597 | 0.020 | -0.1623 | No |
32 | PCNA | PCNA Entrez,  Source | proliferating cell nuclear antigen | 5968 | 0.015 | -0.1887 | No |
33 | SFRS2 | SFRS2 Entrez,  Source | splicing factor, arginine/serine-rich 2 | 5972 | 0.015 | -0.1874 | No |
34 | HNRPA1 | HNRPA1 Entrez,  Source | heterogeneous nuclear ribonucleoprotein A1 | 6063 | 0.013 | -0.1928 | No |
35 | PIM1 | PIM1 Entrez,  Source | pim-1 oncogene | 6208 | 0.011 | -0.2025 | No |
36 | SP3 | SP3 Entrez,  Source | Sp3 transcription factor | 6515 | 0.006 | -0.2249 | No |
37 | SUMO1 | SUMO1 Entrez,  Source | SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) | 6611 | 0.005 | -0.2315 | No |
38 | GSPT1 | GSPT1 Entrez,  Source | G1 to S phase transition 1 | 6717 | 0.004 | -0.2391 | No |
39 | PRPS1 | PRPS1 Entrez,  Source | phosphoribosyl pyrophosphate synthetase 1 | 6821 | 0.002 | -0.2466 | No |
40 | NCL | NCL Entrez,  Source | nucleolin | 6959 | 0.000 | -0.2569 | No |
41 | DCK | DCK Entrez,  Source | deoxycytidine kinase | 6967 | 0.000 | -0.2574 | No |
42 | SFRS12 | SFRS12 Entrez,  Source | splicing factor, arginine/serine-rich 12 | 7147 | -0.002 | -0.2707 | No |
43 | USP52 | USP52 Entrez,  Source | ubiquitin specific peptidase 52 | 7214 | -0.003 | -0.2753 | No |
44 | POLD3 | POLD3 Entrez,  Source | polymerase (DNA-directed), delta 3, accessory subunit | 7338 | -0.005 | -0.2841 | No |
45 | CTCF | CTCF Entrez,  Source | CCCTC-binding factor (zinc finger protein) | 7648 | -0.010 | -0.3063 | No |
46 | RQCD1 | RQCD1 Entrez,  Source | RCD1 required for cell differentiation1 homolog (S. pombe) | 7860 | -0.013 | -0.3209 | No |
47 | NRP2 | NRP2 Entrez,  Source | neuropilin 2 | 8004 | -0.015 | -0.3301 | No |
48 | NELL2 | NELL2 Entrez,  Source | NEL-like 2 (chicken) | 8206 | -0.018 | -0.3434 | No |
49 | PPP1CC | PPP1CC Entrez,  Source | protein phosphatase 1, catalytic subunit, gamma isoform | 8221 | -0.018 | -0.3425 | No |
50 | EPHB1 | EPHB1 Entrez,  Source | EPH receptor B1 | 8589 | -0.025 | -0.3676 | No |
51 | NUP153 | NUP153 Entrez,  Source | nucleoporin 153kDa | 8693 | -0.026 | -0.3727 | No |
52 | EFNA5 | EFNA5 Entrez,  Source | ephrin-A5 | 8800 | -0.028 | -0.3777 | No |
53 | KCNA6 | KCNA6 Entrez,  Source | potassium voltage-gated channel, shaker-related subfamily, member 6 | 8822 | -0.029 | -0.3763 | No |
54 | KBTBD7 | KBTBD7 Entrez,  Source | kelch repeat and BTB (POZ) domain containing 7 | 8874 | -0.029 | -0.3771 | No |
55 | KCND2 | KCND2 Entrez,  Source | potassium voltage-gated channel, Shal-related subfamily, member 2 | 8996 | -0.032 | -0.3828 | No |
56 | GABRB3 | GABRB3 Entrez,  Source | gamma-aminobutyric acid (GABA) A receptor, beta 3 | 9166 | -0.035 | -0.3919 | No |
57 | DNMT1 | DNMT1 Entrez,  Source | DNA (cytosine-5-)-methyltransferase 1 | 9405 | -0.040 | -0.4057 | No |
58 | SFRS10 | SFRS10 Entrez,  Source | splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila) | 9770 | -0.047 | -0.4282 | No |
59 | PVRL1 | PVRL1 Entrez,  Source | poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin) | 9846 | -0.049 | -0.4288 | No |
60 | POLD1 | POLD1 Entrez,  Source | polymerase (DNA directed), delta 1, catalytic subunit 125kDa | 9909 | -0.050 | -0.4282 | No |
61 | KPNB1 | KPNB1 Entrez,  Source | karyopherin (importin) beta 1 | 9930 | -0.051 | -0.4244 | No |
62 | FANCD2 | FANCD2 Entrez,  Source | Fanconi anemia, complementation group D2 | 10129 | -0.055 | -0.4335 | No |
63 | ILF3 | ILF3 Entrez,  Source | interleukin enhancer binding factor 3, 90kDa | 10199 | -0.057 | -0.4328 | No |
64 | HNRPR | HNRPR Entrez,  Source | heterogeneous nuclear ribonucleoprotein R | 10233 | -0.058 | -0.4293 | No |
65 | PRPF4B | PRPF4B Entrez,  Source | PRP4 pre-mRNA processing factor 4 homolog B (yeast) | 10586 | -0.066 | -0.4489 | No |
66 | RAB11B | RAB11B Entrez,  Source | RAB11B, member RAS oncogene family | 10624 | -0.068 | -0.4446 | No |
67 | ING3 | ING3 Entrez,  Source | inhibitor of growth family, member 3 | 10772 | -0.072 | -0.4482 | No |
68 | H2AFZ | H2AFZ Entrez,  Source | H2A histone family, member Z | 11071 | -0.081 | -0.4622 | No |
69 | DDX17 | DDX17 Entrez,  Source | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 | 11390 | -0.094 | -0.4763 | No |
70 | RHD | RHD Entrez,  Source | Rh blood group, D antigen | 11643 | -0.106 | -0.4842 | No |
71 | CDCA7 | CDCA7 Entrez,  Source | cell division cycle associated 7 | 11689 | -0.109 | -0.4762 | No |
72 | SMAD6 | SMAD6 Entrez,  Source | SMAD, mothers against DPP homolog 6 (Drosophila) | 11893 | -0.118 | -0.4791 | No |
73 | NUP62 | NUP62 Entrez,  Source | nucleoporin 62kDa | 11981 | -0.124 | -0.4727 | No |
74 | E2F1 | E2F1 Entrez,  Source | E2F transcription factor 1 | 12376 | -0.156 | -0.4862 | Yes |
75 | MCM7 | MCM7 Entrez,  Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 12413 | -0.160 | -0.4722 | Yes |
76 | MSH2 | MSH2 Entrez,  Source | mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) | 12432 | -0.162 | -0.4566 | Yes |
77 | PAQR4 | PAQR4 Entrez,  Source | progestin and adipoQ receptor family member IV | 12466 | -0.166 | -0.4417 | Yes |
78 | TMPO | TMPO Entrez,  Source | thymopoietin | 12590 | -0.183 | -0.4318 | Yes |
79 | POLA2 | POLA2 Entrez,  Source | polymerase (DNA directed), alpha 2 (70kD subunit) | 12673 | -0.198 | -0.4172 | Yes |
80 | WEE1 | WEE1 Entrez,  Source | WEE1 homolog (S. pombe) | 12929 | -0.262 | -0.4090 | Yes |
81 | SLCO3A1 | SLCO3A1 Entrez,  Source | solute carrier organic anion transporter family, member 3A1 | 12932 | -0.263 | -0.3816 | Yes |
82 | MYH10 | MYH10 Entrez,  Source | myosin, heavy chain 10, non-muscle | 12969 | -0.279 | -0.3551 | Yes |
83 | TYRO3 | TYRO3 Entrez,  Source | TYRO3 protein tyrosine kinase | 12984 | -0.284 | -0.3264 | Yes |
84 | HNRPD | HNRPD Entrez,  Source | heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) | 13048 | -0.319 | -0.2977 | Yes |
85 | ID3 | ID3 Entrez,  Source | inhibitor of DNA binding 3, dominant negative helix-loop-helix protein | 13204 | -0.471 | -0.2601 | Yes |
86 | SOAT1 | SOAT1 Entrez,  Source | sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 | 13248 | -0.551 | -0.2056 | Yes |
87 | MCM6 | MCM6 Entrez,  Source | MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) | 13267 | -0.614 | -0.1426 | Yes |
88 | KIAA0101 | KIAA0101 Entrez,  Source | KIAA0101 | 13280 | -0.659 | -0.0745 | Yes |
89 | STMN1 | STMN1 Entrez,  Source | stathmin 1/oncoprotein 18 | 13302 | -0.755 | 0.0030 | Yes |