Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_72h_versus_single_gel_72h.class.cls
#double_gel_72h_versus_single_gel_72h_repos
Phenotypeclass.cls#double_gel_72h_versus_single_gel_72h_repos
Upregulated in classsingle_gel_72h
GeneSetWGGAATGY_V$TEF1_Q6
Enrichment Score (ES)-0.5110037
Normalized Enrichment Score (NES)-1.9006308
Nominal p-value0.0
FDR q-value0.020463675
FWER p-Value0.579
Table: GSEA Results Summary



Fig 1: Enrichment plot: WGGAATGY_V$TEF1_Q6   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1FGFR2FGFR2
Entrez,  Source
ffer syndrome, Jackson-Weiss syndrome)840.4310.0153No
2COL5A3COL5A3
Entrez,  Source
collagen, type V, alpha 32240.2970.0197No
3PDE1APDE1A
Entrez,  Source
phosphodiesterase 1A, calmodulin-dependent3380.2530.0239No
4LIFRLIFR
Entrez,  Source
leukemia inhibitory factor receptor alpha3390.2530.0367No
5FGFR4FGFR4
Entrez,  Source
fibroblast growth factor receptor 44020.2300.0436No
6CNTN6CNTN6
Entrez,  Source
contactin 64940.2040.0469No
7DMDDMD
Entrez,  Source
dystrophin (muscular dystrophy, Duchenne and Becker types)6860.1750.0412No
8MGLLMGLL
Entrez,  Source
monoglyceride lipase7540.1670.0445No
9SEC14L3SEC14L3
Entrez,  Source
SEC14-like 3 (S. cerevisiae)8080.1610.0486No
10MUSKMUSK
Entrez,  Source
muscle, skeletal, receptor tyrosine kinase8870.1540.0505No
11CACNA1GCACNA1G
Entrez,  Source
calcium channel, voltage-dependent, alpha 1G subunit13130.1230.0244No
12MYH6MYH6
Entrez,  Source
myosin, heavy chain 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)13520.1210.0277No
13ADPRHL1ADPRHL1
Entrez,  Source
ADP-ribosylhydrolase like 114390.1160.0270No
14FGAFGA
Entrez,  Source
fibrinogen alpha chain14740.1150.0302No
15BMP4BMP4
Entrez,  Source
bone morphogenetic protein 415260.1120.0320No
16GLP2RGLP2R
Entrez,  Source
glucagon-like peptide 2 receptor15340.1120.0371No
17KCNE2KCNE2
Entrez,  Source
potassium voltage-gated channel, Isk-related family, member 215720.1100.0398No
18TSPYL4TSPYL4
Entrez,  Source
TSPY-like 416910.1050.0361No
19DDIT3DDIT3
Entrez,  Source
DNA-damage-inducible transcript 319210.0970.0236No
20RGS3RGS3
Entrez,  Source
regulator of G-protein signalling 319910.0940.0231No
21ACSL3ACSL3
Entrez,  Source
acyl-CoA synthetase long-chain family member 319930.0940.0278No
22SHC1SHC1
Entrez,  Source
SHC (Src homology 2 domain containing) transforming protein 119970.0940.0323No
23NOGNOG
Entrez,  Source
noggin20770.0910.0309No
24MAPK10MAPK10
Entrez,  Source
mitogen-activated protein kinase 1022610.0860.0214No
25ATP5G2ATP5G2
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)23180.0850.0214No
26CDK6CDK6
Entrez,  Source
cyclin-dependent kinase 627460.073-0.0073No
27MPZMPZ
Entrez,  Source
myelin protein zero (Charcot-Marie-Tooth neuropathy 1B)30190.066-0.0246No
28ATF4ATF4
Entrez,  Source
activating transcription factor 4 (tax-responsive enhancer element B67)30580.065-0.0242No
29ERGERG
Entrez,  Source
v-ets erythroblastosis virus E26 oncogene homolog (avian)32740.061-0.0375No
30NRG2NRG2
Entrez,  Source
neuregulin 234010.058-0.0441No
31EHD1EHD1
Entrez,  Source
EH-domain containing 134470.057-0.0447No
32MAPRE3MAPRE3
Entrez,  Source
microtubule-associated protein, RP/EB family, member 335420.055-0.0490No
33IL6STIL6ST
Entrez,  Source
interleukin 6 signal transducer (gp130, oncostatin M receptor)37320.051-0.0608No
34NOTCH2NOTCH2
Entrez,  Source
Notch homolog 2 (Drosophila)39890.047-0.0779No
35ATRNATRN
Entrez,  Source
attractin41580.044-0.0884No
36HSPB2HSPB2
Entrez,  Source
heat shock 27kDa protein 243980.040-0.1046No
37FSTL1FSTL1
Entrez,  Source
follistatin-like 144640.038-0.1076No
38KLK6KLK6
Entrez,  Source
kallikrein 6 (neurosin, zyme)45080.038-0.1089No
39TNNT2TNNT2
Entrez,  Source
troponin T type 2 (cardiac)48910.031-0.1364No
40JUNDJUND
Entrez,  Source
jun D proto-oncogene49340.030-0.1380No
41HAPLN1HAPLN1
Entrez,  Source
hyaluronan and proteoglycan link protein 151510.027-0.1531No
42ELF3ELF3
Entrez,  Source
E74-like factor 3 (ets domain transcription factor, epithelial-specific )52330.026-0.1579No
43MDKMDK
Entrez,  Source
midkine (neurite growth-promoting factor 2)52770.025-0.1599No
44SOSTSOST
Entrez,  Source
sclerosteosis52920.025-0.1597No
45GDI1GDI1
Entrez,  Source
GDP dissociation inhibitor 154660.022-0.1717No
46ANGPT1ANGPT1
Entrez,  Source
angiopoietin 154740.022-0.1711No
47NR4A1NR4A1
Entrez,  Source
nuclear receptor subfamily 4, group A, member 155230.021-0.1737No
48CHRNA1CHRNA1
Entrez,  Source
cholinergic receptor, nicotinic, alpha 1 (muscle)55410.021-0.1739No
49SPARCSPARC
Entrez,  Source
secreted protein, acidic, cysteine-rich (osteonectin)55480.021-0.1733No
50KCNJ13KCNJ13
Entrez,  Source
potassium inwardly-rectifying channel, subfamily J, member 1355680.021-0.1737No
51IGFBP6IGFBP6
Entrez,  Source
insulin-like growth factor binding protein 655940.020-0.1746No
52SIPA1SIPA1
Entrez,  Source
signal-induced proliferation-associated gene 156300.020-0.1762No
53NTF5NTF5
Entrez,  Source
neurotrophin 5 (neurotrophin 4/5)56380.020-0.1758No
54GREM1GREM1
Entrez,  Source
gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis)57830.018-0.1858No
55SLC16A8SLC16A8
Entrez,  Source
solute carrier family 16, member 8 (monocarboxylic acid transporter 3)60230.014-0.2032No
56PGFPGF
Entrez,  Source
placental growth factor, vascular endothelial growth factor-related protein60720.013-0.2062No
57BCL11ABCL11A
Entrez,  Source
B-cell CLL/lymphoma 11A (zinc finger protein)62000.011-0.2153No
58MSX2MSX2
Entrez,  Source
msh homeobox homolog 2 (Drosophila)63600.009-0.2269No
59UPK1BUPK1B
Entrez,  Source
uroplakin 1B65470.006-0.2407No
60SLC12A5SLC12A5
Entrez,  Source
solute carrier family 12, (potassium-chloride transporter) member 566910.004-0.2514No
61ID2ID2
Entrez,  Source
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein67730.003-0.2574No
62DDX3XDDX3X
Entrez,  Source
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked68180.002-0.2606No
63APOEAPOE
Entrez,  Source
apolipoprotein E68590.002-0.2635No
64INHBAINHBA
Entrez,  Source
inhibin, beta A (activin A, activin AB alpha polypeptide)6984-0.000-0.2729No
65SCNN1ASCNN1A
Entrez,  Source
sodium channel, nonvoltage-gated 1 alpha6998-0.000-0.2739No
66HAND2HAND2
Entrez,  Source
heart and neural crest derivatives expressed 27129-0.002-0.2837No
67RHBDF1RHBDF1
Entrez,  Source
rhomboid 5 homolog 1 (Drosophila)7142-0.002-0.2845No
68AP2M1AP2M1
Entrez,  Source
adaptor-related protein complex 2, mu 1 subunit7292-0.005-0.2955No
69RPH3ALRPH3AL
Entrez,  Source
rabphilin 3A-like (without C2 domains)7366-0.005-0.3008No
70CLDN16CLDN16
Entrez,  Source
claudin 167371-0.006-0.3008No
71PGAM2PGAM2
Entrez,  Source
phosphoglycerate mutase 2 (muscle)7429-0.006-0.3048No
72SMARCA2SMARCA2
Entrez,  Source
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 27445-0.007-0.3056No
73UNC13DUNC13D
Entrez,  Source
unc-13 homolog D (C. elegans)7544-0.008-0.3127No
74NR4A3NR4A3
Entrez,  Source
nuclear receptor subfamily 4, group A, member 37647-0.010-0.3199No
75BTF3BTF3
Entrez,  Source
basic transcription factor 37877-0.013-0.3366No
76SLC5A2SLC5A2
Entrez,  Source
solute carrier family 5 (sodium/glucose cotransporter), member 27902-0.014-0.3377No
77MID1MID1
Entrez,  Source
midline 1 (Opitz/BBB syndrome)7962-0.014-0.3415No
78GHRLGHRL
Entrez,  Source
ghrelin/obestatin preprohormone7982-0.015-0.3422No
79KLHDC3KLHDC3
Entrez,  Source
kelch domain containing 37987-0.015-0.3418No
80NFKB2NFKB2
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)8044-0.015-0.3452No
81PTPN11PTPN11
Entrez,  Source
protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)8096-0.016-0.3483No
82SYT8SYT8
Entrez,  Source
synaptotagmin VIII8202-0.018-0.3553No
83CDK2CDK2
Entrez,  Source
cyclin-dependent kinase 28216-0.018-0.3554No
84AVPI1AVPI1
Entrez,  Source
arginine vasopressin-induced 18442-0.022-0.3714No
85CHD4CHD4
Entrez,  Source
chromodomain helicase DNA binding protein 48491-0.023-0.3739No
86MYH7MYH7
Entrez,  Source
myosin, heavy chain 7, cardiac muscle, beta8532-0.024-0.3757No
87CDH3CDH3
Entrez,  Source
cadherin 3, type 1, P-cadherin (placental)8724-0.027-0.3888No
88MRGPRFMRGPRF
Entrez,  Source
MAS-related GPR, member F8754-0.027-0.3897No
89FGF13FGF13
Entrez,  Source
fibroblast growth factor 138816-0.028-0.3929No
90SYT2SYT2
Entrez,  Source
synaptotagmin II8964-0.032-0.4024No
91FRAG1FRAG1
Entrez,  Source
-9157-0.035-0.4152No
92KIFC3KIFC3
Entrez,  Source
kinesin family member C39267-0.037-0.4216No
93CDKN2CCDKN2C
Entrez,  Source
cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)9276-0.037-0.4204No
94PDGFRAPDGFRA
Entrez,  Source
platelet-derived growth factor receptor, alpha polypeptide9383-0.039-0.4264No
95SMAD3SMAD3
Entrez,  Source
SMAD, mothers against DPP homolog 3 (Drosophila)9459-0.041-0.4300No
96PHF12PHF12
Entrez,  Source
PHD finger protein 129531-0.042-0.4333No
97APPBP2APPBP2
Entrez,  Source
amyloid beta precursor protein (cytoplasmic tail) binding protein 29900-0.050-0.4587No
98HDGFHDGF
Entrez,  Source
hepatoma-derived growth factor (high-mobility group protein 1-like)9904-0.050-0.4564No
99ESR1ESR1
Entrez,  Source
estrogen receptor 19961-0.051-0.4581No
100ZIC1ZIC1
Entrez,  Source
Zic family member 1 (odd-paired homolog, Drosophila)9968-0.051-0.4559No
101RNF2RNF2
Entrez,  Source
ring finger protein 210300-0.059-0.4781No
102GABRB1GABRB1
Entrez,  Source
gamma-aminobutyric acid (GABA) A receptor, beta 110323-0.060-0.4767No
103PTHR1PTHR1
Entrez,  Source
parathyroid hormone receptor 110494-0.064-0.4864No
104SOSTDC1SOSTDC1
Entrez,  Source
sclerostin domain containing 110561-0.066-0.4881No
105RAB11BRAB11B
Entrez,  Source
RAB11B, member RAS oncogene family10624-0.068-0.4894No
106NRG1NRG1
Entrez,  Source
neuregulin 110701-0.070-0.4917No
107TRPC4TRPC4
Entrez,  Source
transient receptor potential cation channel, subfamily C, member 410745-0.071-0.4913No
108TMOD3TMOD3
Entrez,  Source
tropomodulin 3 (ubiquitous)10944-0.077-0.5025No
109KCNH2KCNH2
Entrez,  Source
potassium voltage-gated channel, subfamily H (eag-related), member 210984-0.078-0.5015No
110PRKCDBPPRKCDBP
Entrez,  Source
protein kinase C, delta binding protein10986-0.078-0.4977No
111HMGA1HMGA1
Entrez,  Source
high mobility group AT-hook 111163-0.084-0.5068Yes
112SCN8ASCN8A
Entrez,  Source
sodium channel, voltage gated, type VIII, alpha11201-0.086-0.5052Yes
113RESTREST
Entrez,  Source
RE1-silencing transcription factor11228-0.087-0.5028Yes
114SPRED1SPRED1
Entrez,  Source
sprouty-related, EVH1 domain containing 111241-0.088-0.4993Yes
115PTMSPTMS
Entrez,  Source
parathymosin11251-0.088-0.4956Yes
116SLC12A4SLC12A4
Entrez,  Source
solute carrier family 12 (potassium/chloride transporters), member 411336-0.092-0.4973Yes
117ITGB1ITGB1
Entrez,  Source
integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)11396-0.095-0.4970Yes
118JMJD1CJMJD1C
Entrez,  Source
jumonji domain containing 1C11508-0.100-0.5004Yes
119DUSP7DUSP7
Entrez,  Source
dual specificity phosphatase 711512-0.100-0.4956Yes
120SLC9A3R1SLC9A3R1
Entrez,  Source
solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 111571-0.103-0.4948Yes
121KATNB1KATNB1
Entrez,  Source
katanin p80 (WD repeat containing) subunit B 111624-0.106-0.4935Yes
122MLL5MLL5
Entrez,  Source
myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)11628-0.106-0.4884Yes
123PIK3C3PIK3C3
Entrez,  Source
phosphoinositide-3-kinase, class 311635-0.106-0.4835Yes
124CNN3CNN3
Entrez,  Source
calponin 3, acidic11730-0.111-0.4851Yes
125TMSB10TMSB10
Entrez,  Source
thymosin, beta 1011750-0.111-0.4809Yes
126MLLT3MLLT3
Entrez,  Source
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 311753-0.111-0.4754Yes
127OTX2OTX2
Entrez,  Source
orthodenticle homolog 2 (Drosophila)11767-0.112-0.4708Yes
128IER5IER5
Entrez,  Source
immediate early response 511841-0.116-0.4705Yes
129IL17REIL17RE
Entrez,  Source
interleukin 17 receptor E11866-0.117-0.4664Yes
130ITPR3ITPR3
Entrez,  Source
inositol 1,4,5-triphosphate receptor, type 312002-0.125-0.4703Yes
131LMNALMNA
Entrez,  Source
lamin A/C12083-0.130-0.4698Yes
132BMPR2BMPR2
Entrez,  Source
bone morphogenetic protein receptor, type II (serine/threonine kinase)12152-0.135-0.4682Yes
133RAB30RAB30
Entrez,  Source
RAB30, member RAS oncogene family12212-0.140-0.4656Yes
134ERBB2ERBB2
Entrez,  Source
v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)12233-0.142-0.4600Yes
135CYR61CYR61
Entrez,  Source
cysteine-rich, angiogenic inducer, 6112269-0.146-0.4553Yes
136TGIFTGIF
Entrez,  Source
TGFB-induced factor (TALE family homeobox)12319-0.150-0.4514Yes
137PLS3PLS3
Entrez,  Source
plastin 3 (T isoform)12321-0.150-0.4440Yes
138ITGB4ITGB4
Entrez,  Source
integrin, beta 412348-0.153-0.4382Yes
139PIAS3PIAS3
Entrez,  Source
protein inhibitor of activated STAT, 312362-0.154-0.4315Yes
140PROK2PROK2
Entrez,  Source
prokineticin 212439-0.162-0.4291Yes
141PTPRJPTPRJ
Entrez,  Source
protein tyrosine phosphatase, receptor type, J12463-0.165-0.4225Yes
142JUBJUB
Entrez,  Source
jub, ajuba homolog (Xenopus laevis)12625-0.189-0.4252Yes
143DSPDSP
Entrez,  Source
desmoplakin12648-0.194-0.4171Yes
144PRKCIPRKCI
Entrez,  Source
protein kinase C, iota12716-0.208-0.4117Yes
145GPRC5CGPRC5C
Entrez,  Source
G protein-coupled receptor, family C, group 5, member C12872-0.243-0.4112Yes
146MYADMMYADM
Entrez,  Source
myeloid-associated differentiation marker12919-0.258-0.4017Yes
147ARHGAP24ARHGAP24
Entrez,  Source
Rho GTPase activating protein 2412979-0.284-0.3919Yes
148TPM1TPM1
Entrez,  Source
tropomyosin 1 (alpha)13011-0.297-0.3793Yes
149ROCK2ROCK2
Entrez,  Source
Rho-associated, coiled-coil containing protein kinase 213035-0.310-0.3654Yes
150CRYABCRYAB
Entrez,  Source
crystallin, alpha B13153-0.404-0.3539Yes
151POPDC2POPDC2
Entrez,  Source
popeye domain containing 213157-0.411-0.3335Yes
152EDN1EDN1
Entrez,  Source
endothelin 113172-0.431-0.3128Yes
153PDGFAPDGFA
Entrez,  Source
platelet-derived growth factor alpha polypeptide13176-0.433-0.2913Yes
154LAMB3LAMB3
Entrez,  Source
laminin, beta 313195-0.458-0.2695Yes
155DDR1DDR1
Entrez,  Source
discoidin domain receptor family, member 113214-0.489-0.2462Yes
156SLC31A2SLC31A2
Entrez,  Source
solute carrier family 31 (copper transporters), member 213228-0.508-0.2217Yes
157NESNES
Entrez,  Source
nestin13241-0.529-0.1959Yes
158GPM6AGPM6A
Entrez,  Source
glycoprotein M6A13245-0.543-0.1688Yes
159CTGFCTGF
Entrez,  Source
connective tissue growth factor13260-0.571-0.1411Yes
160LAMC2LAMC2
Entrez,  Source
laminin, gamma 213264-0.594-0.1114Yes
161LAMB2LAMB2
Entrez,  Source
laminin, beta 2 (laminin S)13299-0.740-0.0767Yes
162ACTA1ACTA1
Entrez,  Source
actin, alpha 1, skeletal muscle13340-1.5860.0002Yes
Table: GSEA details [plain text format]



Fig 2: WGGAATGY_V$TEF1_Q6   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: WGGAATGY_V$TEF1_Q6: Random ES distribution   
Gene set null distribution of ES for WGGAATGY_V$TEF1_Q6