Details for gene set BAF57_BT549

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_24h_repos
Upregulated in class	double_gel_8d
GeneSet	BAF57_BT549_UP
Enrichment Score (ES)	0.49282068
Normalized Enrichment Score (NES)	1.8136748
Nominal p-value	0.0
FDR q-value	0.025462884
FWER p-Value	0.907

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	COL3A1	COL3A1 Entrez, Source	collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)	43	0.843	0.0427	Yes
2	TIMP2	TIMP2 Entrez, Source	TIMP metallopeptidase inhibitor 2	49	0.810	0.0865	Yes
3	MGP	MGP Entrez, Source	matrix Gla protein	108	0.644	0.1172	Yes
4	DPYD	DPYD Entrez, Source	dihydropyrimidine dehydrogenase	112	0.632	0.1514	Yes
5	F2R	F2R Entrez, Source	coagulation factor II (thrombin) receptor	114	0.625	0.1854	Yes
6	TDO2	TDO2 Entrez, Source	tryptophan 2,3-dioxygenase	170	0.532	0.2102	Yes
7	ALDH6A1	ALDH6A1 Entrez, Source	aldehyde dehydrogenase 6 family, member A1	300	0.402	0.2224	Yes
8	JAG1	JAG1 Entrez, Source	jagged 1 (Alagille syndrome)	318	0.386	0.2421	Yes
9	PLAT	PLAT Entrez, Source	plasminogen activator, tissue	321	0.383	0.2628	Yes
10	MAP3K8	MAP3K8 Entrez, Source	mitogen-activated protein kinase kinase kinase 8	355	0.363	0.2801	Yes
11	TPBG	TPBG Entrez, Source	trophoblast glycoprotein	413	0.330	0.2938	Yes
12	BTD	BTD Entrez, Source	biotinidase	427	0.322	0.3103	Yes
13	UNC5B	UNC5B Entrez, Source	unc-5 homolog B (C. elegans)	522	0.278	0.3184	Yes
14	COL1A1	COL1A1 Entrez, Source	collagen, type I, alpha 1	525	0.277	0.3334	Yes
15	GJB2	GJB2 Entrez, Source	gap junction protein, beta 2, 26kDa (connexin 26)	628	0.250	0.3392	Yes
16	FOXO1A	FOXO1A Entrez, Source	forkhead box O1A (rhabdomyosarcoma)	656	0.244	0.3505	Yes
17	FZD1	FZD1 Entrez, Source	frizzled homolog 1 (Drosophila)	708	0.233	0.3593	Yes
18	PTGFRN	PTGFRN Entrez, Source	prostaglandin F2 receptor negative regulator	770	0.221	0.3668	Yes
19	NGFRAP1	NGFRAP1 Entrez, Source	nerve growth factor receptor (TNFRSF16) associated protein 1	830	0.208	0.3736	Yes
20	MAP1B	MAP1B Entrez, Source	microtubule-associated protein 1B	854	0.203	0.3830	Yes
21	MAFB	MAFB Entrez, Source	v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)	856	0.203	0.3939	Yes
22	SULF2	SULF2 Entrez, Source	sulfatase 2	885	0.197	0.4026	Yes
23	PAWR	PAWR Entrez, Source	PRKC, apoptosis, WT1, regulator	899	0.196	0.4123	Yes
24	TGFB2	TGFB2 Entrez, Source	transforming growth factor, beta 2	916	0.193	0.4216	Yes
25	IGSF4	IGSF4 Entrez, Source	immunoglobulin superfamily, member 4	932	0.190	0.4308	Yes
26	GHR	GHR Entrez, Source	growth hormone receptor	1057	0.176	0.4310	Yes
27	PLAG1	PLAG1 Entrez, Source	pleiomorphic adenoma gene 1	1115	0.169	0.4359	Yes
28	FBLIM1	FBLIM1 Entrez, Source	filamin binding LIM protein 1	1132	0.167	0.4438	Yes
29	SIPA1L1	SIPA1L1 Entrez, Source	signal-induced proliferation-associated 1 like 1	1138	0.167	0.4525	Yes
30	DPYSL3	DPYSL3 Entrez, Source	dihydropyrimidinase-like 3	1163	0.164	0.4596	Yes
31	FN1	FN1 Entrez, Source	fibronectin 1	1246	0.156	0.4619	Yes
32	STOM	STOM Entrez, Source	stomatin	1249	0.156	0.4703	Yes
33	ABCA1	ABCA1 Entrez, Source	ATP-binding cassette, sub-family A (ABC1), member 1	1319	0.149	0.4732	Yes
34	SLC44A1	SLC44A1 Entrez, Source	solute carrier family 44, member 1	1330	0.149	0.4805	Yes
35	PLD3	PLD3 Entrez, Source	phospholipase D family, member 3	1469	0.137	0.4776	Yes
36	CTHRC1	CTHRC1 Entrez, Source	collagen triple helix repeat containing 1	1491	0.136	0.4834	Yes
37	FBXO32	FBXO32 Entrez, Source	F-box protein 32	1539	0.132	0.4870	Yes
38	BCAM	BCAM Entrez, Source	basal cell adhesion molecule (Lutheran blood group)	1593	0.129	0.4900	Yes
39	ME1	ME1 Entrez, Source	malic enzyme 1, NADP(+)-dependent, cytosolic	1647	0.125	0.4928	Yes
40	SULF1	SULF1 Entrez, Source	sulfatase 1	1735	0.120	0.4928	No
41	PROS1	PROS1 Entrez, Source	protein S (alpha)	1901	0.112	0.4864	No
42	KLHL24	KLHL24 Entrez, Source	kelch-like 24 (Drosophila)	2012	0.107	0.4839	No
43	TGFB1	TGFB1 Entrez, Source	transforming growth factor, beta 1 (Camurati-Engelmann disease)	2076	0.105	0.4848	No
44	CFI	CFI Entrez, Source	complement factor I	2096	0.104	0.4891	No
45	SMTN	SMTN Entrez, Source	smoothelin	2386	0.092	0.4722	No
46	AGC1	AGC1 Entrez, Source	aggrecan 1 (chondroitin sulfate proteoglycan 1, large aggregating proteoglycan, antigen identified by monoclonal antibody A0122)	2489	0.088	0.4693	No
47	CA4	CA4 Entrez, Source	carbonic anhydrase IV	2514	0.087	0.4722	No
48	MARCKS	MARCKS Entrez, Source	myristoylated alanine-rich protein kinase C substrate	2595	0.084	0.4707	No
49	IGFBP6	IGFBP6 Entrez, Source	insulin-like growth factor binding protein 6	2598	0.084	0.4751	No
50	SLC12A8	SLC12A8 Entrez, Source	solute carrier family 12 (potassium/chloride transporters), member 8	2697	0.080	0.4721	No
51	STRBP	STRBP Entrez, Source	spermatid perinuclear RNA binding protein	2959	0.072	0.4563	No
52	COL5A1	COL5A1 Entrez, Source	collagen, type V, alpha 1	3222	0.065	0.4400	No
53	SOCS2	SOCS2 Entrez, Source	suppressor of cytokine signaling 2	3280	0.063	0.4391	No
54	CHI3L1	CHI3L1 Entrez, Source	chitinase 3-like 1 (cartilage glycoprotein-39)	3449	0.059	0.4296	No
55	SLC22A17	SLC22A17 Entrez, Source	solute carrier family 22 (organic cation transporter), member 17	3545	0.056	0.4255	No
56	TCEAL8	TCEAL8 Entrez, Source	transcription elongation factor A (SII)-like 8	3701	0.052	0.4166	No
57	RAB27A	RAB27A Entrez, Source	RAB27A, member RAS oncogene family	3739	0.051	0.4166	No
58	SERPINB3	SERPINB3 Entrez, Source	serpin peptidase inhibitor, clade B (ovalbumin), member 3	3795	0.050	0.4152	No
59	BCAT1	BCAT1 Entrez, Source	branched chain aminotransferase 1, cytosolic	3938	0.046	0.4069	No
60	TES	TES Entrez, Source	testis derived transcript (3 LIM domains)	3963	0.045	0.4076	No
61	NID2	NID2 Entrez, Source	nidogen 2 (osteonidogen)	4025	0.044	0.4053	No
62	TGFBI	TGFBI Entrez, Source	transforming growth factor, beta-induced, 68kDa	4125	0.042	0.4001	No
63	CPE	CPE Entrez, Source	carboxypeptidase E	4222	0.039	0.3950	No
64	RHOJ	RHOJ Entrez, Source	ras homolog gene family, member J	4296	0.038	0.3915	No
65	SDC2	SDC2 Entrez, Source	syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)	4569	0.033	0.3727	No
66	NTRK2	NTRK2 Entrez, Source	neurotrophic tyrosine kinase, receptor, type 2	4574	0.033	0.3742	No
67	IGFBP4	IGFBP4 Entrez, Source	insulin-like growth factor binding protein 4	4578	0.032	0.3757	No
68	FNDC1	FNDC1 Entrez, Source	fibronectin type III domain containing 1	4684	0.030	0.3694	No
69	ACTA2	ACTA2 Entrez, Source	actin, alpha 2, smooth muscle, aorta	4827	0.027	0.3602	No
70	ATXN1	ATXN1 Entrez, Source	ataxin 1	4845	0.027	0.3604	No
71	NID1	NID1 Entrez, Source	nidogen 1	4891	0.026	0.3584	No
72	CALD1	CALD1 Entrez, Source	caldesmon 1	5081	0.023	0.3453	No
73	POU3F3	POU3F3 Entrez, Source	POU domain, class 3, transcription factor 3	5115	0.022	0.3440	No
74	SRPX	SRPX Entrez, Source	sushi-repeat-containing protein, X-linked	5153	0.021	0.3423	No
75	CYBRD1	CYBRD1 Entrez, Source	cytochrome b reductase 1	5173	0.021	0.3420	No
76	PLSCR4	PLSCR4 Entrez, Source	phospholipid scramblase 4	5230	0.020	0.3389	No
77	EPAS1	EPAS1 Entrez, Source	endothelial PAS domain protein 1	5306	0.019	0.3342	No
78	RTN1	RTN1 Entrez, Source	reticulon 1	5323	0.018	0.3340	No
79	MMP2	MMP2 Entrez, Source	matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)	5540	0.014	0.3184	No
80	TLE3	TLE3 Entrez, Source	transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	5643	0.012	0.3114	No
81	WT1	WT1 Entrez, Source	Wilms tumor 1	5809	0.009	0.2993	No
82	OXTR	OXTR Entrez, Source	oxytocin receptor	5940	0.006	0.2899	No
83	GATA3	GATA3 Entrez, Source	GATA binding protein 3	6151	0.002	0.2741	No
84	IFIT2	IFIT2 Entrez, Source	interferon-induced protein with tetratricopeptide repeats 2	6336	-0.001	0.2602	No
85	BACE2	BACE2 Entrez, Source	beta-site APP-cleaving enzyme 2	6423	-0.002	0.2538	No
86	IGFBP5	IGFBP5 Entrez, Source	insulin-like growth factor binding protein 5	6450	-0.003	0.2520	No
87	PRRX1	PRRX1 Entrez, Source	paired related homeobox 1	6636	-0.006	0.2383	No
88	NEGR1	NEGR1 Entrez, Source	neuronal growth regulator 1	6659	-0.007	0.2370	No
89	IL1R1	IL1R1 Entrez, Source	interleukin 1 receptor, type I	6718	-0.007	0.2330	No
90	ADD2	ADD2 Entrez, Source	adducin 2 (beta)	6720	-0.008	0.2333	No
91	CBLB	CBLB Entrez, Source	Cas-Br-M (murine) ecotropic retroviral transforming sequence b	6744	-0.008	0.2320	No
92	SIPA1L2	SIPA1L2 Entrez, Source	signal-induced proliferation-associated 1 like 2	6949	-0.011	0.2172	No
93	PMP22	PMP22 Entrez, Source	peripheral myelin protein 22	6967	-0.012	0.2166	No
94	COL15A1	COL15A1 Entrez, Source	collagen, type XV, alpha 1	6979	-0.012	0.2164	No
95	DLL1	DLL1 Entrez, Source	delta-like 1 (Drosophila)	7008	-0.012	0.2149	No
96	DCN	DCN Entrez, Source	decorin	7217	-0.016	0.2001	No
97	COPS8	COPS8 Entrez, Source	COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)	7279	-0.017	0.1964	No
98	ITGB5	ITGB5 Entrez, Source	integrin, beta 5	7282	-0.018	0.1972	No
99	PRSS35	PRSS35 Entrez, Source	protease, serine, 35	7320	-0.018	0.1954	No
100	ANTXR1	ANTXR1 Entrez, Source	anthrax toxin receptor 1	7631	-0.024	0.1733	No
101	COL12A1	COL12A1 Entrez, Source	collagen, type XII, alpha 1	7756	-0.026	0.1653	No
102	CSPG2	CSPG2 Entrez, Source	chondroitin sulfate proteoglycan 2 (versican)	7897	-0.029	0.1563	No
103	PAK3	PAK3 Entrez, Source	p21 (CDKN1A)-activated kinase 3	8370	-0.039	0.1227	No
104	DIO2	DIO2 Entrez, Source	deiodinase, iodothyronine, type II	8533	-0.042	0.1127	No
105	PARVA	PARVA Entrez, Source	parvin, alpha	8673	-0.045	0.1046	No
106	KLRC2	KLRC2 Entrez, Source	killer cell lectin-like receptor subfamily C, member 2	8810	-0.048	0.0970	No
107	LUM	LUM Entrez, Source	lumican	8919	-0.050	0.0915	No
108	RPL37	RPL37 Entrez, Source	ribosomal protein L37	9243	-0.057	0.0702	No
109	KITLG	KITLG Entrez, Source	KIT ligand	9361	-0.060	0.0646	No
110	CD200	CD200 Entrez, Source	CD200 molecule	9392	-0.060	0.0656	No
111	GULP1	GULP1 Entrez, Source	GULP, engulfment adaptor PTB domain containing 1	9461	-0.062	0.0638	No
112	SERPINB7	SERPINB7 Entrez, Source	serpin peptidase inhibitor, clade B (ovalbumin), member 7	9559	-0.064	0.0600	No
113	THEX1	THEX1 Entrez, Source	three prime histone mRNA exonuclease 1	9835	-0.072	0.0431	No
114	SOCS3	SOCS3 Entrez, Source	suppressor of cytokine signaling 3	9839	-0.072	0.0468	No
115	RARRES1	RARRES1 Entrez, Source	retinoic acid receptor responder (tazarotene induced) 1	9927	-0.075	0.0442	No
116	LIFR	LIFR Entrez, Source	leukemia inhibitory factor receptor alpha	9964	-0.075	0.0456	No
117	FAP	FAP Entrez, Source	fibroblast activation protein, alpha	10470	-0.089	0.0123	No
118	SERINC5	SERINC5 Entrez, Source	serine incorporator 5	10779	-0.100	-0.0056	No
119	IRS1	IRS1 Entrez, Source	insulin receptor substrate 1	11226	-0.117	-0.0330	No
120	FHL2	FHL2 Entrez, Source	four and a half LIM domains 2	11359	-0.123	-0.0363	No
121	EXOSC7	EXOSC7 Entrez, Source	exosome component 7	11683	-0.137	-0.0533	No
122	TGFBR1	TGFBR1 Entrez, Source	transforming growth factor, beta receptor I (activin A receptor type II-like kinase, 53kDa)	11835	-0.147	-0.0567	No
123	WARS	WARS Entrez, Source	tryptophanyl-tRNA synthetase	12088	-0.163	-0.0669	No
124	BMPR2	BMPR2 Entrez, Source	bone morphogenetic protein receptor, type II (serine/threonine kinase)	12122	-0.166	-0.0603	No
125	ZBTB1	ZBTB1 Entrez, Source	zinc finger and BTB domain containing 1	12279	-0.177	-0.0624	No
126	IL13RA1	IL13RA1 Entrez, Source	interleukin 13 receptor, alpha 1	12296	-0.179	-0.0539	No
127	NAP1L3	NAP1L3 Entrez, Source	nucleosome assembly protein 1-like 3	12307	-0.180	-0.0448	No
128	CASK	CASK Entrez, Source	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	12559	-0.206	-0.0526	No
129	AVIL	AVIL Entrez, Source	advillin	13113	-0.335	-0.0762	No
130	GABBR2	GABBR2 Entrez, Source	gamma-aminobutyric acid (GABA) B receptor, 2	13117	-0.336	-0.0582	No
131	GAS5	GAS5 Entrez, Source	growth arrest-specific 5	13147	-0.356	-0.0410	No
132	VLDLR	VLDLR Entrez, Source	very low density lipoprotein receptor	13233	-0.442	-0.0233	No
133	IFIT3	IFIT3 Entrez, Source	interferon-induced protein with tetratricopeptide repeats 3	13294	-0.577	0.0036	No