Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
Upregulated in class | double_gel_8d |
GeneSet | BOQUEST_CD31PLUS_VS_CD31MINUS_DN |
Enrichment Score (ES) | 0.56108236 |
Normalized Enrichment Score (NES) | 2.0988724 |
Nominal p-value | 0.0 |
FDR q-value | 0.0016635908 |
FWER p-Value | 0.024 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | COL1A2 | COL1A2 Entrez,  Source | collagen, type I, alpha 2 | 12 | 1.254 | 0.0499 | Yes |
2 | COL3A1 | COL3A1 Entrez,  Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 43 | 0.843 | 0.0818 | Yes |
3 | COL5A2 | COL5A2 Entrez,  Source | collagen, type V, alpha 2 | 61 | 0.759 | 0.1113 | Yes |
4 | CRYAB | CRYAB Entrez,  Source | crystallin, alpha B | 62 | 0.756 | 0.1419 | Yes |
5 | ACOX2 | ACOX2 Entrez,  Source | acyl-Coenzyme A oxidase 2, branched chain | 97 | 0.667 | 0.1664 | Yes |
6 | BHLHB3 | BHLHB3 Entrez,  Source | basic helix-loop-helix domain containing, class B, 3 | 98 | 0.666 | 0.1934 | Yes |
7 | MGP | MGP Entrez,  Source | matrix Gla protein | 108 | 0.644 | 0.2188 | Yes |
8 | OMD | OMD Entrez,  Source | osteomodulin | 155 | 0.556 | 0.2378 | Yes |
9 | TNFAIP6 | TNFAIP6 Entrez,  Source | tumor necrosis factor, alpha-induced protein 6 | 159 | 0.550 | 0.2599 | Yes |
10 | MRC2 | MRC2 Entrez,  Source | mannose receptor, C type 2 | 161 | 0.547 | 0.2820 | Yes |
11 | TMEM176B | TMEM176B Entrez,  Source | transmembrane protein 176B | 168 | 0.535 | 0.3032 | Yes |
12 | ALDH1A1 | ALDH1A1 Entrez,  Source | aldehyde dehydrogenase 1 family, member A1 | 185 | 0.510 | 0.3227 | Yes |
13 | SERPINE2 | SERPINE2 Entrez,  Source | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 | 190 | 0.499 | 0.3426 | Yes |
14 | PRELP | PRELP Entrez,  Source | proline/arginine-rich end leucine-rich repeat protein | 229 | 0.459 | 0.3583 | Yes |
15 | CFD | CFD Entrez,  Source | complement factor D (adipsin) | 286 | 0.410 | 0.3707 | Yes |
16 | COL1A1 | COL1A1 Entrez,  Source | collagen, type I, alpha 1 | 525 | 0.277 | 0.3638 | Yes |
17 | IGFBP3 | IGFBP3 Entrez,  Source | insulin-like growth factor binding protein 3 | 533 | 0.274 | 0.3744 | Yes |
18 | LOX | LOX Entrez,  Source | lysyl oxidase | 558 | 0.267 | 0.3834 | Yes |
19 | GPC4 | GPC4 Entrez,  Source | glypican 4 | 577 | 0.262 | 0.3927 | Yes |
20 | COL6A2 | COL6A2 Entrez,  Source | collagen, type VI, alpha 2 | 579 | 0.262 | 0.4032 | Yes |
21 | GSTM3 | GSTM3 Entrez,  Source | glutathione S-transferase M3 (brain) | 606 | 0.256 | 0.4116 | Yes |
22 | EMP3 | EMP3 Entrez,  Source | epithelial membrane protein 3 | 662 | 0.243 | 0.4173 | Yes |
23 | GSN | GSN Entrez,  Source | gelsolin (amyloidosis, Finnish type) | 666 | 0.242 | 0.4269 | Yes |
24 | FST | FST Entrez,  Source | follistatin | 678 | 0.240 | 0.4358 | Yes |
25 | CDO1 | CDO1 Entrez,  Source | cysteine dioxygenase, type I | 689 | 0.237 | 0.4446 | Yes |
26 | PTPRD | PTPRD Entrez,  Source | protein tyrosine phosphatase, receptor type, D | 731 | 0.229 | 0.4508 | Yes |
27 | CD302 | CD302 Entrez,  Source | CD302 molecule | 747 | 0.227 | 0.4589 | Yes |
28 | GPC3 | GPC3 Entrez,  Source | glypican 3 | 757 | 0.224 | 0.4673 | Yes |
29 | PLAGL1 | PLAGL1 Entrez,  Source | pleiomorphic adenoma gene-like 1 | 764 | 0.223 | 0.4759 | Yes |
30 | PCOLCE | PCOLCE Entrez,  Source | procollagen C-endopeptidase enhancer | 804 | 0.213 | 0.4815 | Yes |
31 | TWIST1 | TWIST1 Entrez,  Source | twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila) | 813 | 0.211 | 0.4895 | Yes |
32 | MAFB | MAFB Entrez,  Source | v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) | 856 | 0.203 | 0.4945 | Yes |
33 | SERPINA5 | SERPINA5 Entrez,  Source | serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 | 876 | 0.199 | 0.5011 | Yes |
34 | F3 | F3 Entrez,  Source | coagulation factor III (thromboplastin, tissue factor) | 956 | 0.188 | 0.5027 | Yes |
35 | FBN1 | FBN1 Entrez,  Source | fibrillin 1 | 968 | 0.187 | 0.5094 | Yes |
36 | PLN | PLN Entrez,  Source | phospholamban | 994 | 0.183 | 0.5150 | Yes |
37 | TSPAN8 | TSPAN8 Entrez,  Source | tetraspanin 8 | 1016 | 0.180 | 0.5207 | Yes |
38 | BASP1 | BASP1 Entrez,  Source | brain abundant, membrane attached signal protein 1 | 1031 | 0.178 | 0.5268 | Yes |
39 | TMED3 | TMED3 Entrez,  Source | transmembrane emp24 protein transport domain containing 3 | 1053 | 0.177 | 0.5324 | Yes |
40 | FEZ1 | FEZ1 Entrez,  Source | fasciculation and elongation protein zeta 1 (zygin I) | 1077 | 0.173 | 0.5377 | Yes |
41 | TIMP1 | TIMP1 Entrez,  Source | TIMP metallopeptidase inhibitor 1 | 1095 | 0.171 | 0.5433 | Yes |
42 | PTGIS | PTGIS Entrez,  Source | prostaglandin I2 (prostacyclin) synthase | 1107 | 0.170 | 0.5494 | Yes |
43 | APOD | APOD Entrez,  Source | apolipoprotein D | 1122 | 0.169 | 0.5552 | Yes |
44 | PDE4DIP | PDE4DIP Entrez,  Source | phosphodiesterase 4D interacting protein (myomegalin) | 1134 | 0.167 | 0.5611 | Yes |
45 | S100A4 | S100A4 Entrez,  Source | S100 calcium binding protein A4 | 1285 | 0.152 | 0.5559 | No |
46 | EDG2 | EDG2 Entrez,  Source | endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2 | 1399 | 0.143 | 0.5531 | No |
47 | CUGBP2 | CUGBP2 Entrez,  Source | CUG triplet repeat, RNA binding protein 2 | 1501 | 0.135 | 0.5509 | No |
48 | SCRN1 | SCRN1 Entrez,  Source | secernin 1 | 1507 | 0.134 | 0.5560 | No |
49 | FXYD1 | FXYD1 Entrez,  Source | FXYD domain containing ion transport regulator 1 (phospholemman) | 1721 | 0.122 | 0.5447 | No |
50 | NET1 | NET1 Entrez,  Source | neuroepithelial cell transforming gene 1 | 1732 | 0.121 | 0.5489 | No |
51 | DZIP1 | DZIP1 Entrez,  Source | DAZ interacting protein 1 | 1960 | 0.109 | 0.5361 | No |
52 | DDR2 | DDR2 Entrez,  Source | discoidin domain receptor family, member 2 | 2021 | 0.107 | 0.5359 | No |
53 | RNASE4 | RNASE4 Entrez,  Source | ribonuclease, RNase A family, 4 | 2064 | 0.105 | 0.5369 | No |
54 | ASPA | ASPA Entrez,  Source | aspartoacylase (Canavan disease) | 2090 | 0.104 | 0.5393 | No |
55 | LIF | LIF Entrez,  Source | leukemia inhibitory factor (cholinergic differentiation factor) | 2204 | 0.099 | 0.5347 | No |
56 | SGCE | SGCE Entrez,  Source | sarcoglycan, epsilon | 2274 | 0.096 | 0.5334 | No |
57 | SERPINF1 | SERPINF1 Entrez,  Source | serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 | 2361 | 0.093 | 0.5306 | No |
58 | IGFBP6 | IGFBP6 Entrez,  Source | insulin-like growth factor binding protein 6 | 2598 | 0.084 | 0.5161 | No |
59 | APOE | APOE Entrez,  Source | apolipoprotein E | 2619 | 0.083 | 0.5180 | No |
60 | MFAP4 | MFAP4 Entrez,  Source | microfibrillar-associated protein 4 | 2644 | 0.082 | 0.5195 | No |
61 | C6 | C6 Entrez,  Source | complement component 6 | 2922 | 0.074 | 0.5015 | No |
62 | HNMT | HNMT Entrez,  Source | histamine N-methyltransferase | 2986 | 0.072 | 0.4996 | No |
63 | OSR2 | OSR2 Entrez,  Source | odd-skipped related 2 (Drosophila) | 3029 | 0.070 | 0.4993 | No |
64 | AXL | AXL Entrez,  Source | AXL receptor tyrosine kinase | 3086 | 0.069 | 0.4978 | No |
65 | FGF7 | FGF7 Entrez,  Source | fibroblast growth factor 7 (keratinocyte growth factor) | 3188 | 0.066 | 0.4928 | No |
66 | COL5A1 | COL5A1 Entrez,  Source | collagen, type V, alpha 1 | 3222 | 0.065 | 0.4929 | No |
67 | LTBP2 | LTBP2 Entrez,  Source | latent transforming growth factor beta binding protein 2 | 3324 | 0.062 | 0.4878 | No |
68 | EFEMP1 | EFEMP1 Entrez,  Source | EGF-containing fibulin-like extracellular matrix protein 1 | 3378 | 0.061 | 0.4862 | No |
69 | DCAMKL1 | DCAMKL1 Entrez,  Source | doublecortin and CaM kinase-like 1 | 3615 | 0.054 | 0.4706 | No |
70 | PLA2G2A | PLA2G2A Entrez,  Source | phospholipase A2, group IIA (platelets, synovial fluid) | 3618 | 0.054 | 0.4726 | No |
71 | NOVA1 | NOVA1 Entrez,  Source | neuro-oncological ventral antigen 1 | 3664 | 0.053 | 0.4714 | No |
72 | PDLIM3 | PDLIM3 Entrez,  Source | PDZ and LIM domain 3 | 3680 | 0.053 | 0.4723 | No |
73 | PLA2G4A | PLA2G4A Entrez,  Source | phospholipase A2, group IVA (cytosolic, calcium-dependent) | 3785 | 0.050 | 0.4665 | No |
74 | KCNK1 | KCNK1 Entrez,  Source | potassium channel, subfamily K, member 1 | 3913 | 0.047 | 0.4588 | No |
75 | CDH11 | CDH11 Entrez,  Source | cadherin 11, type 2, OB-cadherin (osteoblast) | 3983 | 0.045 | 0.4554 | No |
76 | GFPT2 | GFPT2 Entrez,  Source | glutamine-fructose-6-phosphate transaminase 2 | 4020 | 0.044 | 0.4544 | No |
77 | LRP1 | LRP1 Entrez,  Source | low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) | 4204 | 0.039 | 0.4421 | No |
78 | CFH | CFH Entrez,  Source | complement factor H | 4209 | 0.039 | 0.4434 | No |
79 | SLIT2 | SLIT2 Entrez,  Source | slit homolog 2 (Drosophila) | 4330 | 0.037 | 0.4358 | No |
80 | PDGFRA | PDGFRA Entrez,  Source | platelet-derived growth factor receptor, alpha polypeptide | 4352 | 0.037 | 0.4357 | No |
81 | SDC2 | SDC2 Entrez,  Source | syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan) | 4569 | 0.033 | 0.4207 | No |
82 | NTRK2 | NTRK2 Entrez,  Source | neurotrophic tyrosine kinase, receptor, type 2 | 4574 | 0.033 | 0.4217 | No |
83 | THBS2 | THBS2 Entrez,  Source | thrombospondin 2 | 4738 | 0.029 | 0.4105 | No |
84 | ATP1A2 | ATP1A2 Entrez,  Source | ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide | 4943 | 0.025 | 0.3961 | No |
85 | GAS7 | GAS7 Entrez,  Source | growth arrest-specific 7 | 5052 | 0.023 | 0.3888 | No |
86 | SRPX | SRPX Entrez,  Source | sushi-repeat-containing protein, X-linked | 5153 | 0.021 | 0.3821 | No |
87 | CYBRD1 | CYBRD1 Entrez,  Source | cytochrome b reductase 1 | 5173 | 0.021 | 0.3815 | No |
88 | CAPN6 | CAPN6 Entrez,  Source | calpain 6 | 5247 | 0.020 | 0.3768 | No |
89 | BMPR1A | BMPR1A Entrez,  Source | bone morphogenetic protein receptor, type IA | 5309 | 0.019 | 0.3729 | No |
90 | COL16A1 | COL16A1 Entrez,  Source | collagen, type XVI, alpha 1 | 5388 | 0.017 | 0.3677 | No |
91 | MMP2 | MMP2 Entrez,  Source | matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) | 5540 | 0.014 | 0.3568 | No |
92 | SPOCK1 | SPOCK1 Entrez,  Source | sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 | 5637 | 0.012 | 0.3500 | No |
93 | NPY1R | NPY1R Entrez,  Source | neuropeptide Y receptor Y1 | 5663 | 0.012 | 0.3486 | No |
94 | SLIT3 | SLIT3 Entrez,  Source | slit homolog 3 (Drosophila) | 5734 | 0.010 | 0.3437 | No |
95 | MYOC | MYOC Entrez,  Source | myocilin, trabecular meshwork inducible glucocorticoid response | 5877 | 0.008 | 0.3332 | No |
96 | PTGDS | PTGDS Entrez,  Source | prostaglandin D2 synthase 21kDa (brain) | 5900 | 0.007 | 0.3318 | No |
97 | SFRP4 | SFRP4 Entrez,  Source | secreted frizzled-related protein 4 | 5920 | 0.007 | 0.3307 | No |
98 | CEBPB | CEBPB Entrez,  Source | CCAAT/enhancer binding protein (C/EBP), beta | 6062 | 0.004 | 0.3201 | No |
99 | WISP2 | WISP2 Entrez,  Source | WNT1 inducible signaling pathway protein 2 | 6134 | 0.003 | 0.3149 | No |
100 | DCX | DCX Entrez,  Source | doublecortex; lissencephaly, X-linked (doublecortin) | 6186 | 0.001 | 0.3110 | No |
101 | CDKN2C | CDKN2C Entrez,  Source | cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) | 6502 | -0.004 | 0.2873 | No |
102 | PRRX1 | PRRX1 Entrez,  Source | paired related homeobox 1 | 6636 | -0.006 | 0.2775 | No |
103 | FMOD | FMOD Entrez,  Source | fibromodulin | 6665 | -0.007 | 0.2756 | No |
104 | CXCL14 | CXCL14 Entrez,  Source | chemokine (C-X-C motif) ligand 14 | 6900 | -0.010 | 0.2583 | No |
105 | ROBO1 | ROBO1 Entrez,  Source | roundabout, axon guidance receptor, homolog 1 (Drosophila) | 6932 | -0.011 | 0.2564 | No |
106 | F10 | F10 Entrez,  Source | coagulation factor X | 7144 | -0.015 | 0.2410 | No |
107 | DCN | DCN Entrez,  Source | decorin | 7217 | -0.016 | 0.2362 | No |
108 | CHRDL1 | CHRDL1 Entrez,  Source | chordin-like 1 | 7218 | -0.016 | 0.2369 | No |
109 | CRABP2 | CRABP2 Entrez,  Source | cellular retinoic acid binding protein 2 | 7366 | -0.019 | 0.2265 | No |
110 | KCND2 | KCND2 Entrez,  Source | potassium voltage-gated channel, Shal-related subfamily, member 2 | 7584 | -0.023 | 0.2110 | No |
111 | INHBA | INHBA Entrez,  Source | inhibin, beta A (activin A, activin AB alpha polypeptide) | 7768 | -0.027 | 0.1982 | No |
112 | CSPG2 | CSPG2 Entrez,  Source | chondroitin sulfate proteoglycan 2 (versican) | 7897 | -0.029 | 0.1897 | No |
113 | PDGFD | PDGFD Entrez,  Source | platelet derived growth factor D | 7976 | -0.031 | 0.1850 | No |
114 | CFB | CFB Entrez,  Source | complement factor B | 8083 | -0.033 | 0.1783 | No |
115 | MBP | MBP Entrez,  Source | myelin basic protein | 8096 | -0.033 | 0.1788 | No |
116 | PTGFR | PTGFR Entrez,  Source | prostaglandin F receptor (FP) | 8181 | -0.035 | 0.1738 | No |
117 | MYH11 | MYH11 Entrez,  Source | myosin, heavy chain 11, smooth muscle | 8278 | -0.037 | 0.1680 | No |
118 | LSP1 | LSP1 Entrez,  Source | lymphocyte-specific protein 1 | 8463 | -0.041 | 0.1557 | No |
119 | FBLN5 | FBLN5 Entrez,  Source | fibulin 5 | 8504 | -0.042 | 0.1544 | No |
120 | SHOX2 | SHOX2 Entrez,  Source | short stature homeobox 2 | 8562 | -0.043 | 0.1518 | No |
121 | SLC22A3 | SLC22A3 Entrez,  Source | solute carrier family 22 (extraneuronal monoamine transporter), member 3 | 8585 | -0.043 | 0.1519 | No |
122 | WNT5A | WNT5A Entrez,  Source | wingless-type MMTV integration site family, member 5A | 8849 | -0.049 | 0.1339 | No |
123 | LUM | LUM Entrez,  Source | lumican | 8919 | -0.050 | 0.1307 | No |
124 | CTSK | CTSK Entrez,  Source | cathepsin K (pycnodysostosis) | 8999 | -0.052 | 0.1268 | No |
125 | IGF1 | IGF1 Entrez,  Source | insulin-like growth factor 1 (somatomedin C) | 9134 | -0.055 | 0.1189 | No |
126 | FIGF | FIGF Entrez,  Source | c-fos induced growth factor (vascular endothelial growth factor D) | 9671 | -0.067 | 0.0810 | No |
127 | HTRA1 | HTRA1 Entrez,  Source | HtrA serine peptidase 1 | 9698 | -0.068 | 0.0817 | No |
128 | GDF10 | GDF10 Entrez,  Source | growth differentiation factor 10 | 10049 | -0.078 | 0.0584 | No |
129 | ANGPT1 | ANGPT1 Entrez,  Source | angiopoietin 1 | 10068 | -0.079 | 0.0602 | No |
130 | FAP | FAP Entrez,  Source | fibroblast activation protein, alpha | 10470 | -0.089 | 0.0334 | No |
131 | LRRC17 | LRRC17 Entrez,  Source | leucine rich repeat containing 17 | 10475 | -0.090 | 0.0367 | No |
132 | GSTM5 | GSTM5 Entrez,  Source | glutathione S-transferase M5 | 10537 | -0.091 | 0.0358 | No |
133 | SPON2 | SPON2 Entrez,  Source | spondin 2, extracellular matrix protein | 10694 | -0.097 | 0.0279 | No |
134 | ANPEP | ANPEP Entrez,  Source | alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150) | 10917 | -0.106 | 0.0154 | No |
135 | GPNMB | GPNMB Entrez,  Source | glycoprotein (transmembrane) nmb | 10958 | -0.107 | 0.0167 | No |
136 | SOX9 | SOX9 Entrez,  Source | SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal) | 11038 | -0.109 | 0.0151 | No |
137 | PDGFRL | PDGFRL Entrez,  Source | platelet-derived growth factor receptor-like | 11182 | -0.116 | 0.0089 | No |
138 | IRS1 | IRS1 Entrez,  Source | insulin receptor substrate 1 | 11226 | -0.117 | 0.0104 | No |
139 | CD44 | CD44 Entrez,  Source | CD44 molecule (Indian blood group) | 11461 | -0.127 | -0.0022 | No |
140 | COLEC12 | COLEC12 Entrez,  Source | collectin sub-family member 12 | 11746 | -0.141 | -0.0180 | No |
141 | OGT | OGT Entrez,  Source | O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) | 11813 | -0.145 | -0.0171 | No |
142 | MME | MME Entrez,  Source | membrane metallo-endopeptidase (neutral endopeptidase, enkephalinase) | 11986 | -0.156 | -0.0238 | No |
143 | CXCL12 | CXCL12 Entrez,  Source | chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) | 12188 | -0.170 | -0.0322 | No |
144 | HSPB8 | HSPB8 Entrez,  Source | heat shock 22kDa protein 8 | 12237 | -0.175 | -0.0287 | No |
145 | C1ORF24 | C1ORF24 Entrez,  Source | chromosome 1 open reading frame 24 | 12324 | -0.182 | -0.0279 | No |
146 | NOTCH2 | NOTCH2 Entrez,  Source | Notch homolog 2 (Drosophila) | 12747 | -0.232 | -0.0505 | No |
147 | NT5E | NT5E Entrez,  Source | 5'-nucleotidase, ecto (CD73) | 12800 | -0.241 | -0.0446 | No |
148 | FMO1 | FMO1 Entrez,  Source | flavin containing monooxygenase 1 | 12848 | -0.253 | -0.0379 | No |
149 | GRIA3 | GRIA3 Entrez,  Source | glutamate receptor, ionotrophic, AMPA 3 | 12877 | -0.261 | -0.0295 | No |
150 | EGFR | EGFR Entrez,  Source | epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian) | 12946 | -0.276 | -0.0235 | No |
151 | CES1 | CES1 Entrez,  Source | carboxylesterase 1 (monocyte/macrophage serine esterase 1) | 13135 | -0.348 | -0.0236 | No |
152 | UGDH | UGDH Entrez,  Source | UDP-glucose dehydrogenase | 13138 | -0.352 | -0.0095 | No |
153 | AOX1 | AOX1 Entrez,  Source | aldehyde oxidase 1 | 13304 | -0.615 | 0.0029 | No |