Details for gene set EXTRACELLULAR

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_24h_repos
Upregulated in class	double_gel_8d
GeneSet	EXTRACELLULAR_MATRIX
Enrichment Score (ES)	0.6153908
Normalized Enrichment Score (NES)	1.9704374
Nominal p-value	0.0
FDR q-value	0.007088708
FWER p-Value	0.234

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	COL1A2	COL1A2 Entrez, Source	collagen, type I, alpha 2	12	1.254	0.1386	Yes
2	CTGF	CTGF Entrez, Source	connective tissue growth factor	37	0.888	0.2355	Yes
3	COL3A1	COL3A1 Entrez, Source	collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)	43	0.843	0.3290	Yes
4	COL5A2	COL5A2 Entrez, Source	collagen, type V, alpha 2	61	0.759	0.4122	Yes
5	MGP	MGP Entrez, Source	matrix Gla protein	108	0.644	0.4803	Yes
6	PRELP	PRELP Entrez, Source	proline/arginine-rich end leucine-rich repeat protein	229	0.459	0.5224	Yes
7	LAMC1	LAMC1 Entrez, Source	laminin, gamma 1 (formerly LAMB2)	530	0.275	0.5304	Yes
8	LAMB2	LAMB2 Entrez, Source	laminin, beta 2 (laminin S)	590	0.260	0.5548	Yes
9	EFEMP2	EFEMP2 Entrez, Source	EGF-containing fibulin-like extracellular matrix protein 2	852	0.204	0.5579	Yes
10	USH2A	USH2A Entrez, Source	Usher syndrome 2A (autosomal recessive, mild)	918	0.192	0.5744	Yes
11	FBN1	FBN1 Entrez, Source	fibrillin 1	968	0.187	0.5915	Yes
12	COL18A1	COL18A1 Entrez, Source	collagen, type XVIII, alpha 1	1103	0.170	0.6003	Yes
13	LTBP4	LTBP4 Entrez, Source	latent transforming growth factor beta binding protein 4	1296	0.151	0.6027	Yes
14	ADAMTS5	ADAMTS5 Entrez, Source	ADAM metallopeptidase with thrombospondin type 1 motif, 5 (aggrecanase-2)	1522	0.133	0.6006	Yes
15	IMPG1	IMPG1 Entrez, Source	interphotoreceptor matrix proteoglycan 1	1740	0.120	0.5976	Yes
16	SPG7	SPG7 Entrez, Source	spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)	1845	0.115	0.6025	Yes
17	TGFB1	TGFB1 Entrez, Source	transforming growth factor, beta 1 (Camurati-Engelmann disease)	2076	0.105	0.5968	Yes
18	DSPP	DSPP Entrez, Source	dentin sialophosphoprotein	2163	0.101	0.6015	Yes
19	SGCE	SGCE Entrez, Source	sarcoglycan, epsilon	2274	0.096	0.6040	Yes
20	SGCG	SGCG Entrez, Source	sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)	2335	0.094	0.6099	Yes
21	COLQ	COLQ Entrez, Source	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	2670	0.081	0.5938	Yes
22	ECM1	ECM1 Entrez, Source	extracellular matrix protein 1	2718	0.080	0.5991	Yes
23	MEPE	MEPE Entrez, Source	matrix, extracellular phosphoglycoprotein with ASARM motif (bone)	2775	0.078	0.6035	Yes
24	COL11A1	COL11A1 Entrez, Source	collagen, type XI, alpha 1	2981	0.072	0.5961	Yes
25	COL5A1	COL5A1 Entrez, Source	collagen, type V, alpha 1	3222	0.065	0.5852	Yes
26	COL4A4	COL4A4 Entrez, Source	collagen, type IV, alpha 4	3320	0.062	0.5848	Yes
27	LTBP2	LTBP2 Entrez, Source	latent transforming growth factor beta binding protein 2	3324	0.062	0.5915	Yes
28	LAMA3	LAMA3 Entrez, Source	laminin, alpha 3	3344	0.061	0.5969	Yes
29	EFEMP1	EFEMP1 Entrez, Source	EGF-containing fibulin-like extracellular matrix protein 1	3378	0.061	0.6012	Yes
30	MMP11	MMP11 Entrez, Source	matrix metallopeptidase 11 (stromelysin 3)	3445	0.059	0.6028	Yes
31	CHI3L1	CHI3L1 Entrez, Source	chitinase 3-like 1 (cartilage glycoprotein-39)	3449	0.059	0.6092	Yes
32	PRSS2	PRSS2 Entrez, Source	protease, serine, 2 (trypsin 2)	3480	0.058	0.6134	Yes
33	TFPI2	TFPI2 Entrez, Source	tissue factor pathway inhibitor 2	3591	0.055	0.6112	Yes
34	MATN1	MATN1 Entrez, Source	matrilin 1, cartilage matrix protein	3617	0.054	0.6154	Yes
35	TINAG	TINAG Entrez, Source	tubulointerstitial nephritis antigen	3770	0.051	0.6096	No
36	NID2	NID2 Entrez, Source	nidogen 2 (osteonidogen)	4025	0.044	0.5953	No
37	FBLN2	FBLN2 Entrez, Source	fibulin 2	4117	0.042	0.5932	No
38	MMP10	MMP10 Entrez, Source	matrix metallopeptidase 10 (stromelysin 2)	4938	0.025	0.5342	No
39	CAV3	CAV3 Entrez, Source	caveolin 3	4995	0.024	0.5327	No
40	COL16A1	COL16A1 Entrez, Source	collagen, type XVI, alpha 1	5388	0.017	0.5051	No
41	DMP1	DMP1 Entrez, Source	dentin matrix acidic phosphoprotein	5545	0.014	0.4949	No
42	COL9A1	COL9A1 Entrez, Source	collagen, type IX, alpha 1	6131	0.003	0.4512	No
43	MUC5AC	MUC5AC Entrez, Source	mucin 5AC, oligomeric mucus/gel-forming	6248	0.001	0.4425	No
44	FMOD	FMOD Entrez, Source	fibromodulin	6665	-0.007	0.4119	No
45	COL15A1	COL15A1 Entrez, Source	collagen, type XV, alpha 1	6979	-0.012	0.3897	No
46	SOD1	SOD1 Entrez, Source	superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult))	7093	-0.014	0.3827	No
47	THBS4	THBS4 Entrez, Source	thrombospondin 4	7541	-0.022	0.3516	No
48	CHAD	CHAD Entrez, Source	chondroadherin	7677	-0.025	0.3442	No
49	FBLN5	FBLN5 Entrez, Source	fibulin 5	8504	-0.042	0.2866	No
50	HAPLN1	HAPLN1 Entrez, Source	hyaluronan and proteoglycan link protein 1	8916	-0.050	0.2613	No
51	LUM	LUM Entrez, Source	lumican	8919	-0.050	0.2667	No
52	IMPG2	IMPG2 Entrez, Source	interphotoreceptor matrix proteoglycan 2	9065	-0.053	0.2617	No
53	COMP	COMP Entrez, Source	cartilage oligomeric matrix protein	9154	-0.055	0.2612	No
54	DMD	DMD Entrez, Source	dystrophin (muscular dystrophy, Duchenne and Becker types)	9896	-0.074	0.2136	No
55	FBN2	FBN2 Entrez, Source	fibrillin 2 (congenital contractural arachnodactyly)	10457	-0.089	0.1814	No
56	SMC3	SMC3 Entrez, Source	structural maintenance of chromosomes 3	10571	-0.092	0.1831	No
57	COL10A1	COL10A1 Entrez, Source	collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)	10885	-0.104	0.1712	No
58	COL5A3	COL5A3 Entrez, Source	collagen, type V, alpha 3	11366	-0.123	0.1487	No