Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | EXTRACELLULAR_MATRIX_PART |
| Enrichment Score (ES) | 0.704088 |
| Normalized Enrichment Score (NES) | 1.9726171 |
| Nominal p-value | 0.0017793594 |
| FDR q-value | 0.0069190455 |
| FWER p-Value | 0.227 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 12 | 1.254 | 0.2370 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 43 | 0.843 | 0.3947 | Yes |
| 3 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 61 | 0.759 | 0.5375 | Yes |
| 4 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 530 | 0.275 | 0.5545 | Yes |
| 5 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 590 | 0.260 | 0.5993 | Yes |
| 6 | EFEMP2 | EFEMP2 Entrez, Source | EGF-containing fibulin-like extracellular matrix protein 2 | 852 | 0.204 | 0.6185 | Yes |
| 7 | USH2A | USH2A Entrez, Source | Usher syndrome 2A (autosomal recessive, mild) | 918 | 0.192 | 0.6501 | Yes |
| 8 | FBN1 | FBN1 Entrez, Source | fibrillin 1 | 968 | 0.187 | 0.6818 | Yes |
| 9 | COL18A1 | COL18A1 Entrez, Source | collagen, type XVIII, alpha 1 | 1103 | 0.170 | 0.7041 | Yes |
| 10 | SGCE | SGCE Entrez, Source | sarcoglycan, epsilon | 2274 | 0.096 | 0.6345 | No |
| 11 | SGCG | SGCG Entrez, Source | sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) | 2335 | 0.094 | 0.6478 | No |
| 12 | COLQ | COLQ Entrez, Source | collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase | 2670 | 0.081 | 0.6382 | No |
| 13 | COL11A1 | COL11A1 Entrez, Source | collagen, type XI, alpha 1 | 2981 | 0.072 | 0.6285 | No |
| 14 | COL5A1 | COL5A1 Entrez, Source | collagen, type V, alpha 1 | 3222 | 0.065 | 0.6228 | No |
| 15 | COL4A4 | COL4A4 Entrez, Source | collagen, type IV, alpha 4 | 3320 | 0.062 | 0.6273 | No |
| 16 | LAMA3 | LAMA3 Entrez, Source | laminin, alpha 3 | 3344 | 0.061 | 0.6372 | No |
| 17 | TINAG | TINAG Entrez, Source | tubulointerstitial nephritis antigen | 3770 | 0.051 | 0.6149 | No |
| 18 | NID2 | NID2 Entrez, Source | nidogen 2 (osteonidogen) | 4025 | 0.044 | 0.6041 | No |
| 19 | CAV3 | CAV3 Entrez, Source | caveolin 3 | 4995 | 0.024 | 0.5359 | No |
| 20 | COL16A1 | COL16A1 Entrez, Source | collagen, type XVI, alpha 1 | 5388 | 0.017 | 0.5097 | No |
| 21 | COL9A1 | COL9A1 Entrez, Source | collagen, type IX, alpha 1 | 6131 | 0.003 | 0.4545 | No |
| 22 | MUC5AC | MUC5AC Entrez, Source | mucin 5AC, oligomeric mucus/gel-forming | 6248 | 0.001 | 0.4459 | No |
| 23 | COL15A1 | COL15A1 Entrez, Source | collagen, type XV, alpha 1 | 6979 | -0.012 | 0.3933 | No |
| 24 | LUM | LUM Entrez, Source | lumican | 8919 | -0.050 | 0.2572 | No |
| 25 | DMD | DMD Entrez, Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 9896 | -0.074 | 0.1979 | No |
| 26 | SMC3 | SMC3 Entrez, Source | structural maintenance of chromosomes 3 | 10571 | -0.092 | 0.1648 | No |
| 27 | COL10A1 | COL10A1 Entrez, Source | collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia) | 10885 | -0.104 | 0.1611 | No |
| 28 | COL5A3 | COL5A3 Entrez, Source | collagen, type V, alpha 3 | 11366 | -0.123 | 0.1484 | No |
