Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | HSA04512_ECM_RECEPTOR_INTERACTION |
| Enrichment Score (ES) | 0.6193829 |
| Normalized Enrichment Score (NES) | 1.9520904 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.0077865487 |
| FWER p-Value | 0.294 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 12 | 1.254 | 0.1282 | Yes |
| 2 | LAMC2 | LAMC2 Entrez, Source | laminin, gamma 2 | 23 | 1.021 | 0.2326 | Yes |
| 3 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 43 | 0.843 | 0.3179 | Yes |
| 4 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 61 | 0.759 | 0.3948 | Yes |
| 5 | COL4A1 | COL4A1 Entrez, Source | collagen, type IV, alpha 1 | 89 | 0.680 | 0.4627 | Yes |
| 6 | ITGB4 | ITGB4 Entrez, Source | integrin, beta 4 | 266 | 0.426 | 0.4934 | Yes |
| 7 | LAMA5 | LAMA5 Entrez, Source | laminin, alpha 5 | 368 | 0.352 | 0.5220 | Yes |
| 8 | COL1A1 | COL1A1 Entrez, Source | collagen, type I, alpha 1 | 525 | 0.277 | 0.5388 | Yes |
| 9 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 530 | 0.275 | 0.5667 | Yes |
| 10 | COL6A2 | COL6A2 Entrez, Source | collagen, type VI, alpha 2 | 579 | 0.262 | 0.5901 | Yes |
| 11 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 590 | 0.260 | 0.6161 | Yes |
| 12 | ITGA9 | ITGA9 Entrez, Source | integrin, alpha 9 | 923 | 0.192 | 0.6108 | Yes |
| 13 | ITGB6 | ITGB6 Entrez, Source | integrin, beta 6 | 1195 | 0.161 | 0.6070 | Yes |
| 14 | FN1 | FN1 Entrez, Source | fibronectin 1 | 1246 | 0.156 | 0.6194 | Yes |
| 15 | VTN | VTN Entrez, Source | vitronectin | 1776 | 0.118 | 0.5917 | No |
| 16 | ITGA1 | ITGA1 Entrez, Source | integrin, alpha 1 | 1891 | 0.112 | 0.5947 | No |
| 17 | SPP1 | SPP1 Entrez, Source | secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1) | 2345 | 0.094 | 0.5702 | No |
| 18 | VWF | VWF Entrez, Source | von Willebrand factor | 2400 | 0.092 | 0.5756 | No |
| 19 | COL11A1 | COL11A1 Entrez, Source | collagen, type XI, alpha 1 | 2981 | 0.072 | 0.5394 | No |
| 20 | COL5A1 | COL5A1 Entrez, Source | collagen, type V, alpha 1 | 3222 | 0.065 | 0.5280 | No |
| 21 | COL4A4 | COL4A4 Entrez, Source | collagen, type IV, alpha 4 | 3320 | 0.062 | 0.5271 | No |
| 22 | LAMA3 | LAMA3 Entrez, Source | laminin, alpha 3 | 3344 | 0.061 | 0.5317 | No |
| 23 | GP9 | GP9 Entrez, Source | glycoprotein IX (platelet) | 3686 | 0.053 | 0.5114 | No |
| 24 | SDC4 | SDC4 Entrez, Source | syndecan 4 (amphiglycan, ryudocan) | 3799 | 0.050 | 0.5082 | No |
| 25 | HMMR | HMMR Entrez, Source | hyaluronan-mediated motility receptor (RHAMM) | 3937 | 0.046 | 0.5026 | No |
| 26 | RELN | RELN Entrez, Source | reelin | 4416 | 0.035 | 0.4703 | No |
| 27 | DAG1 | DAG1 Entrez, Source | dystroglycan 1 (dystrophin-associated glycoprotein 1) | 4529 | 0.033 | 0.4653 | No |
| 28 | SDC2 | SDC2 Entrez, Source | syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan) | 4569 | 0.033 | 0.4657 | No |
| 29 | FNDC1 | FNDC1 Entrez, Source | fibronectin type III domain containing 1 | 4684 | 0.030 | 0.4603 | No |
| 30 | THBS2 | THBS2 Entrez, Source | thrombospondin 2 | 4738 | 0.029 | 0.4593 | No |
| 31 | IBSP | IBSP Entrez, Source | integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II) | 5170 | 0.021 | 0.4290 | No |
| 32 | GP5 | GP5 Entrez, Source | glycoprotein V (platelet) | 6461 | -0.003 | 0.3323 | No |
| 33 | SDC3 | SDC3 Entrez, Source | syndecan 3 (N-syndecan) | 6486 | -0.003 | 0.3308 | No |
| 34 | ITGA6 | ITGA6 Entrez, Source | integrin, alpha 6 | 7051 | -0.013 | 0.2897 | No |
| 35 | ITGB5 | ITGB5 Entrez, Source | integrin, beta 5 | 7282 | -0.018 | 0.2742 | No |
| 36 | ITGA7 | ITGA7 Entrez, Source | integrin, alpha 7 | 7298 | -0.018 | 0.2749 | No |
| 37 | THBS4 | THBS4 Entrez, Source | thrombospondin 4 | 7541 | -0.022 | 0.2590 | No |
| 38 | CHAD | CHAD Entrez, Source | chondroadherin | 7677 | -0.025 | 0.2514 | No |
| 39 | ITGB1 | ITGB1 Entrez, Source | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | 8134 | -0.034 | 0.2206 | No |
| 40 | CD47 | CD47 Entrez, Source | CD47 molecule | 8623 | -0.044 | 0.1884 | No |
| 41 | SV2A | SV2A Entrez, Source | synaptic vesicle glycoprotein 2A | 8767 | -0.047 | 0.1825 | No |
| 42 | ITGB7 | ITGB7 Entrez, Source | integrin, beta 7 | 9146 | -0.055 | 0.1597 | No |
| 43 | COL2A1 | COL2A1 Entrez, Source | collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital) | 9434 | -0.061 | 0.1445 | No |
| 44 | FNDC5 | FNDC5 Entrez, Source | fibronectin type III domain containing 5 | 9911 | -0.074 | 0.1163 | No |
| 45 | SV2C | SV2C Entrez, Source | synaptic vesicle glycoprotein 2C | 10913 | -0.105 | 0.0518 | No |
| 46 | TNR | TNR Entrez, Source | tenascin R (restrictin, janusin) | 10977 | -0.107 | 0.0581 | No |
| 47 | COL5A3 | COL5A3 Entrez, Source | collagen, type V, alpha 3 | 11366 | -0.123 | 0.0416 | No |
| 48 | CD44 | CD44 Entrez, Source | CD44 molecule (Indian blood group) | 11461 | -0.127 | 0.0477 | No |
| 49 | SDC1 | SDC1 Entrez, Source | syndecan 1 | 12438 | -0.192 | -0.0060 | No |
| 50 | SV2B | SV2B Entrez, Source | synaptic vesicle glycoprotein 2B | 12618 | -0.213 | 0.0025 | No |
| 51 | LAMB3 | LAMB3 Entrez, Source | laminin, beta 3 | 13259 | -0.504 | 0.0062 | No |
