Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | IGF_VS_PDGF_DN |
| Enrichment Score (ES) | 0.6654414 |
| Normalized Enrichment Score (NES) | 1.779192 |
| Nominal p-value | 0.0017699115 |
| FDR q-value | 0.032614555 |
| FWER p-Value | 0.977 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | MGP | MGP Entrez, Source | matrix Gla protein | 108 | 0.644 | 0.1877 | Yes |
| 2 | F2R | F2R Entrez, Source | coagulation factor II (thrombin) receptor | 114 | 0.625 | 0.3776 | Yes |
| 3 | THBD | THBD Entrez, Source | thrombomodulin | 877 | 0.198 | 0.3807 | Yes |
| 4 | F3 | F3 Entrez, Source | coagulation factor III (thromboplastin, tissue factor) | 956 | 0.188 | 0.4319 | Yes |
| 5 | BHMT | BHMT Entrez, Source | betaine-homocysteine methyltransferase | 1054 | 0.177 | 0.4783 | Yes |
| 6 | TIMP1 | TIMP1 Entrez, Source | TIMP metallopeptidase inhibitor 1 | 1095 | 0.171 | 0.5275 | Yes |
| 7 | PRKG2 | PRKG2 Entrez, Source | protein kinase, cGMP-dependent, type II | 1202 | 0.161 | 0.5685 | Yes |
| 8 | STOM | STOM Entrez, Source | stomatin | 1249 | 0.156 | 0.6125 | Yes |
| 9 | FBXO32 | FBXO32 Entrez, Source | F-box protein 32 | 1539 | 0.132 | 0.6309 | Yes |
| 10 | DUSP6 | DUSP6 Entrez, Source | dual specificity phosphatase 6 | 2490 | 0.088 | 0.5864 | Yes |
| 11 | ATP1A3 | ATP1A3 Entrez, Source | ATPase, Na+/K+ transporting, alpha 3 polypeptide | 2792 | 0.077 | 0.5872 | Yes |
| 12 | CAPG | CAPG Entrez, Source | capping protein (actin filament), gelsolin-like | 2891 | 0.074 | 0.6025 | Yes |
| 13 | DUSP4 | DUSP4 Entrez, Source | dual specificity phosphatase 4 | 2916 | 0.074 | 0.6232 | Yes |
| 14 | CD53 | CD53 Entrez, Source | CD53 molecule | 2932 | 0.073 | 0.6443 | Yes |
| 15 | SPAG5 | SPAG5 Entrez, Source | sperm associated antigen 5 | 2946 | 0.073 | 0.6654 | Yes |
| 16 | ERRFI1 | ERRFI1 Entrez, Source | ERBB receptor feedback inhibitor 1 | 3633 | 0.054 | 0.6303 | No |
| 17 | GREM1 | GREM1 Entrez, Source | gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis) | 3749 | 0.051 | 0.6372 | No |
| 18 | THBS2 | THBS2 Entrez, Source | thrombospondin 2 | 4738 | 0.029 | 0.5720 | No |
| 19 | PTGS1 | PTGS1 Entrez, Source | prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) | 5556 | 0.014 | 0.5147 | No |
| 20 | PHEX | PHEX Entrez, Source | phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets) | 5619 | 0.012 | 0.5138 | No |
| 21 | IL1R1 | IL1R1 Entrez, Source | interleukin 1 receptor, type I | 6718 | -0.007 | 0.4337 | No |
| 22 | CAV2 | CAV2 Entrez, Source | caveolin 2 | 7012 | -0.012 | 0.4155 | No |
| 23 | CRYL1 | CRYL1 Entrez, Source | crystallin, lambda 1 | 8339 | -0.038 | 0.3275 | No |
| 24 | CDKN2D | CDKN2D Entrez, Source | cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) | 9497 | -0.063 | 0.2597 | No |
| 25 | DSCR1L1 | DSCR1L1 Entrez, Source | Down syndrome critical region gene 1-like 1 | 10644 | -0.095 | 0.2026 | No |
