Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
Upregulated in class | double_gel_8d |
GeneSet | IGLESIAS_E2FMINUS_UP |
Enrichment Score (ES) | 0.64701426 |
Normalized Enrichment Score (NES) | 2.3330874 |
Nominal p-value | 0.0 |
FDR q-value | 0.0 |
FWER p-Value | 0.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | COL1A2 | COL1A2 Entrez,  Source | collagen, type I, alpha 2 | 12 | 1.254 | 0.0541 | Yes |
2 | SLC25A4 | SLC25A4 Entrez,  Source | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 | 13 | 1.195 | 0.1065 | Yes |
3 | CCND2 | CCND2 Entrez,  Source | cyclin D2 | 21 | 1.039 | 0.1515 | Yes |
4 | ANXA1 | ANXA1 Entrez,  Source | annexin A1 | 25 | 0.995 | 0.1949 | Yes |
5 | DAB2 | DAB2 Entrez,  Source | disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) | 32 | 0.925 | 0.2351 | Yes |
6 | CD9 | CD9 Entrez,  Source | CD9 molecule | 41 | 0.871 | 0.2727 | Yes |
7 | COL3A1 | COL3A1 Entrez,  Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 43 | 0.843 | 0.3096 | Yes |
8 | S100A6 | S100A6 Entrez,  Source | S100 calcium binding protein A6 | 55 | 0.785 | 0.3432 | Yes |
9 | COL5A2 | COL5A2 Entrez,  Source | collagen, type V, alpha 2 | 61 | 0.759 | 0.3761 | Yes |
10 | LGALS1 | LGALS1 Entrez,  Source | lectin, galactoside-binding, soluble, 1 (galectin 1) | 82 | 0.687 | 0.4047 | Yes |
11 | COL4A1 | COL4A1 Entrez,  Source | collagen, type IV, alpha 1 | 89 | 0.680 | 0.4341 | Yes |
12 | LPL | LPL Entrez,  Source | lipoprotein lipase | 107 | 0.646 | 0.4612 | Yes |
13 | EMP1 | EMP1 Entrez,  Source | epithelial membrane protein 1 | 119 | 0.621 | 0.4876 | Yes |
14 | SERPINH1 | SERPINH1 Entrez,  Source | serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) | 233 | 0.457 | 0.4991 | Yes |
15 | CTSE | CTSE Entrez,  Source | cathepsin E | 284 | 0.411 | 0.5133 | Yes |
16 | CFD | CFD Entrez,  Source | complement factor D (adipsin) | 286 | 0.410 | 0.5313 | Yes |
17 | GJA1 | GJA1 Entrez,  Source | gap junction protein, alpha 1, 43kDa (connexin 43) | 316 | 0.387 | 0.5460 | Yes |
18 | TMSB4X | TMSB4X Entrez,  Source | thymosin, beta 4, X-linked | 342 | 0.369 | 0.5603 | Yes |
19 | SERPINB6A | 461 | 0.301 | 0.5646 | Yes | ||
20 | SPARC | SPARC Entrez,  Source | secreted protein, acidic, cysteine-rich (osteonectin) | 480 | 0.292 | 0.5761 | Yes |
21 | ANXA3 | ANXA3 Entrez,  Source | annexin A3 | 484 | 0.291 | 0.5886 | Yes |
22 | COL1A1 | COL1A1 Entrez,  Source | collagen, type I, alpha 1 | 525 | 0.277 | 0.5978 | Yes |
23 | S100A11 | S100A11 Entrez,  Source | S100 calcium binding protein A11 | 562 | 0.267 | 0.6067 | Yes |
24 | NFKBIA | NFKBIA Entrez,  Source | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha | 565 | 0.265 | 0.6182 | Yes |
25 | COL6A2 | COL6A2 Entrez,  Source | collagen, type VI, alpha 2 | 579 | 0.262 | 0.6287 | Yes |
26 | GSN | GSN Entrez,  Source | gelsolin (amyloidosis, Finnish type) | 666 | 0.242 | 0.6328 | Yes |
27 | CDO1 | CDO1 Entrez,  Source | cysteine dioxygenase, type I | 689 | 0.237 | 0.6416 | Yes |
28 | C1QB | C1QB Entrez,  Source | complement component 1, q subcomponent, B chain | 786 | 0.217 | 0.6438 | Yes |
29 | IGSF4 | IGSF4 Entrez,  Source | immunoglobulin superfamily, member 4 | 932 | 0.190 | 0.6412 | Yes |
30 | TYROBP | TYROBP Entrez,  Source | TYRO protein tyrosine kinase binding protein | 965 | 0.187 | 0.6470 | Yes |
31 | COL18A1 | COL18A1 Entrez,  Source | collagen, type XVIII, alpha 1 | 1103 | 0.170 | 0.6441 | No |
32 | CTSS | CTSS Entrez,  Source | cathepsin S | 1264 | 0.154 | 0.6388 | No |
33 | GNAI2 | GNAI2 Entrez,  Source | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 | 1585 | 0.129 | 0.6203 | No |
34 | ARSA | ARSA Entrez,  Source | arylsulfatase A | 1702 | 0.123 | 0.6169 | No |
35 | ACADL | ACADL Entrez,  Source | acyl-Coenzyme A dehydrogenase, long chain | 1720 | 0.122 | 0.6210 | No |
36 | SS18 | SS18 Entrez,  Source | synovial sarcoma translocation, chromosome 18 | 1753 | 0.119 | 0.6238 | No |
37 | RHOB | RHOB Entrez,  Source | ras homolog gene family, member B | 2072 | 0.105 | 0.6044 | No |
38 | SERPINF1 | SERPINF1 Entrez,  Source | serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 | 2361 | 0.093 | 0.5867 | No |
39 | RBP1 | RBP1 Entrez,  Source | retinol binding protein 1, cellular | 2591 | 0.084 | 0.5731 | No |
40 | APOE | APOE Entrez,  Source | apolipoprotein E | 2619 | 0.083 | 0.5746 | No |
41 | APLP2 | APLP2 Entrez,  Source | amyloid beta (A4) precursor-like protein 2 | 2657 | 0.082 | 0.5754 | No |
42 | CD53 | CD53 Entrez,  Source | CD53 molecule | 2932 | 0.073 | 0.5579 | No |
43 | C3 | C3 Entrez,  Source | complement component 3 | 2945 | 0.073 | 0.5602 | No |
44 | ENPP2 | ENPP2 Entrez,  Source | ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) | 2952 | 0.072 | 0.5629 | No |
45 | GAS6 | GAS6 Entrez,  Source | growth arrest-specific 6 | 3043 | 0.070 | 0.5592 | No |
46 | ALAS2 | ALAS2 Entrez,  Source | aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia) | 3103 | 0.068 | 0.5578 | No |
47 | NPTN | NPTN Entrez,  Source | neuroplastin | 3133 | 0.068 | 0.5585 | No |
48 | ACADM | ACADM Entrez,  Source | acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain | 3794 | 0.050 | 0.5109 | No |
49 | SEPT2 | SEPT2 Entrez,  Source | septin 2 | 3995 | 0.045 | 0.4977 | No |
50 | NID2 | NID2 Entrez,  Source | nidogen 2 (osteonidogen) | 4025 | 0.044 | 0.4975 | No |
51 | FBLN2 | FBLN2 Entrez,  Source | fibulin 2 | 4117 | 0.042 | 0.4924 | No |
52 | DSTN | DSTN Entrez,  Source | destrin (actin depolymerizing factor) | 4198 | 0.040 | 0.4881 | No |
53 | CSRP1 | CSRP1 Entrez,  Source | cysteine and glycine-rich protein 1 | 4522 | 0.033 | 0.4652 | No |
54 | IGFBP4 | IGFBP4 Entrez,  Source | insulin-like growth factor binding protein 4 | 4578 | 0.032 | 0.4624 | No |
55 | S100A10 | S100A10 Entrez,  Source | S100 calcium binding protein A10 | 4630 | 0.031 | 0.4600 | No |
56 | SKP1A | SKP1A Entrez,  Source | S-phase kinase-associated protein 1A (p19A) | 4751 | 0.029 | 0.4522 | No |
57 | NFIB | NFIB Entrez,  Source | nuclear factor I/B | 4797 | 0.028 | 0.4500 | No |
58 | ACTA2 | ACTA2 Entrez,  Source | actin, alpha 2, smooth muscle, aorta | 4827 | 0.027 | 0.4490 | No |
59 | ADIPOQ | ADIPOQ Entrez,  Source | adiponectin, C1Q and collagen domain containing | 4838 | 0.027 | 0.4494 | No |
60 | NID1 | NID1 Entrez,  Source | nidogen 1 | 4891 | 0.026 | 0.4467 | No |
61 | CCNG1 | CCNG1 Entrez,  Source | cyclin G1 | 5270 | 0.019 | 0.4189 | No |
62 | CLK1 | CLK1 Entrez,  Source | CDC-like kinase 1 | 5504 | 0.015 | 0.4020 | No |
63 | EVL | EVL Entrez,  Source | Enah/Vasp-like | 5789 | 0.009 | 0.3809 | No |
64 | LAPTM5 | LAPTM5 Entrez,  Source | lysosomal associated multispanning membrane protein 5 | 5827 | 0.009 | 0.3785 | No |
65 | CAPZA2 | CAPZA2 Entrez,  Source | capping protein (actin filament) muscle Z-line, alpha 2 | 5982 | 0.005 | 0.3671 | No |
66 | SCG2 | SCG2 Entrez,  Source | secretogranin II (chromogranin C) | 6379 | -0.001 | 0.3372 | No |
67 | IGFBP5 | IGFBP5 Entrez,  Source | insulin-like growth factor binding protein 5 | 6450 | -0.003 | 0.3321 | No |
68 | ANGPTL2 | ANGPTL2 Entrez,  Source | angiopoietin-like 2 | 6574 | -0.005 | 0.3230 | No |
69 | CALM2 | CALM2 Entrez,  Source | calmodulin 2 (phosphorylase kinase, delta) | 6851 | -0.010 | 0.3026 | No |
70 | PMP22 | PMP22 Entrez,  Source | peripheral myelin protein 22 | 6967 | -0.012 | 0.2944 | No |
71 | COL15A1 | COL15A1 Entrez,  Source | collagen, type XV, alpha 1 | 6979 | -0.012 | 0.2941 | No |
72 | B2M | B2M Entrez,  Source | beta-2-microglobulin | 7066 | -0.014 | 0.2882 | No |
73 | DCN | DCN Entrez,  Source | decorin | 7217 | -0.016 | 0.2776 | No |
74 | LCP1 | LCP1 Entrez,  Source | lymphocyte cytosolic protein 1 (L-plastin) | 7308 | -0.018 | 0.2716 | No |
75 | ELN | ELN Entrez,  Source | elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) | 7315 | -0.018 | 0.2719 | No |
76 | TIMM22 | TIMM22 Entrez,  Source | translocase of inner mitochondrial membrane 22 homolog (yeast) | 7491 | -0.021 | 0.2596 | No |
77 | SMAD1 | SMAD1 Entrez,  Source | SMAD, mothers against DPP homolog 1 (Drosophila) | 7536 | -0.022 | 0.2573 | No |
78 | LYL1 | LYL1 Entrez,  Source | lymphoblastic leukemia derived sequence 1 | 7941 | -0.030 | 0.2281 | No |
79 | ANXA2 | ANXA2 Entrez,  Source | annexin A2 | 8088 | -0.033 | 0.2185 | No |
80 | ITGB1 | ITGB1 Entrez,  Source | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | 8134 | -0.034 | 0.2166 | No |
81 | HBA-A1 | 8605 | -0.044 | 0.1830 | No | ||
82 | CD47 | CD47 Entrez,  Source | CD47 molecule | 8623 | -0.044 | 0.1836 | No |
83 | ITM2B | ITM2B Entrez,  Source | integral membrane protein 2B | 8720 | -0.046 | 0.1784 | No |
84 | CDC42 | CDC42 Entrez,  Source | cell division cycle 42 (GTP binding protein, 25kDa) | 8893 | -0.050 | 0.1676 | No |
85 | LUM | LUM Entrez,  Source | lumican | 8919 | -0.050 | 0.1679 | No |
86 | KITLG | KITLG Entrez,  Source | KIT ligand | 9361 | -0.060 | 0.1372 | No |
87 | LAPTM4A | LAPTM4A Entrez,  Source | lysosomal-associated protein transmembrane 4 alpha | 9810 | -0.071 | 0.1064 | No |
88 | RPS14 | RPS14 Entrez,  Source | ribosomal protein S14 | 9858 | -0.073 | 0.1061 | No |
89 | CDKN1C | CDKN1C Entrez,  Source | cyclin-dependent kinase inhibitor 1C (p57, Kip2) | 10104 | -0.079 | 0.0910 | No |
90 | RBBP7 | RBBP7 Entrez,  Source | retinoblastoma binding protein 7 | 10181 | -0.081 | 0.0889 | No |
91 | DNAJA1 | DNAJA1 Entrez,  Source | DnaJ (Hsp40) homolog, subfamily A, member 1 | 10249 | -0.083 | 0.0874 | No |
92 | BAX | BAX Entrez,  Source | BCL2-associated X protein | 10485 | -0.090 | 0.0736 | No |
93 | MORF4L1 | MORF4L1 Entrez,  Source | mortality factor 4 like 1 | 10928 | -0.106 | 0.0449 | No |
94 | CNN3 | CNN3 Entrez,  Source | calponin 3, acidic | 11041 | -0.109 | 0.0412 | No |
95 | ID2 | ID2 Entrez,  Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 11229 | -0.117 | 0.0322 | No |
96 | CTSZ | CTSZ Entrez,  Source | cathepsin Z | 11291 | -0.120 | 0.0328 | No |
97 | PCNA | PCNA Entrez,  Source | proliferating cell nuclear antigen | 11449 | -0.127 | 0.0266 | No |
98 | BZW1 | BZW1 Entrez,  Source | basic leucine zipper and W2 domains 1 | 11682 | -0.137 | 0.0150 | No |
99 | GNB1 | GNB1 Entrez,  Source | guanine nucleotide binding protein (G protein), beta polypeptide 1 | 11879 | -0.149 | 0.0068 | No |
100 | LMNA | LMNA Entrez,  Source | lamin A/C | 12500 | -0.199 | -0.0313 | No |
101 | CACYBP | CACYBP Entrez,  Source | calcyclin binding protein | 12649 | -0.217 | -0.0330 | No |
102 | FMO1 | FMO1 Entrez,  Source | flavin containing monooxygenase 1 | 12848 | -0.253 | -0.0368 | No |
103 | TUBB | TUBB Entrez,  Source | tubulin, beta | 12860 | -0.256 | -0.0265 | No |
104 | GADD45B | GADD45B Entrez,  Source | growth arrest and DNA-damage-inducible, beta | 12969 | -0.282 | -0.0222 | No |
105 | MCM7 | MCM7 Entrez,  Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 13101 | -0.328 | -0.0178 | No |
106 | UGDH | UGDH Entrez,  Source | UDP-glucose dehydrogenase | 13138 | -0.352 | -0.0051 | No |
107 | CES3 | CES3 Entrez,  Source | carboxylesterase 3 (brain) | 13245 | -0.465 | 0.0073 | No |