Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | INFLAMMATORY_RESPONSE_PATHWAY |
| Enrichment Score (ES) | 0.6986079 |
| Normalized Enrichment Score (NES) | 1.8473939 |
| Nominal p-value | 0.001984127 |
| FDR q-value | 0.01885858 |
| FWER p-Value | 0.783 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | LAMC2 | LAMC2 Entrez, Source | laminin, gamma 2 | 23 | 1.021 | 0.2194 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 43 | 0.843 | 0.4006 | Yes |
| 3 | LAMA5 | LAMA5 Entrez, Source | laminin, alpha 5 | 368 | 0.352 | 0.4524 | Yes |
| 4 | COL1A1 | COL1A1 Entrez, Source | collagen, type I, alpha 1 | 525 | 0.277 | 0.5008 | Yes |
| 5 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 530 | 0.275 | 0.5600 | Yes |
| 6 | CD40 | CD40 Entrez, Source | CD40 molecule, TNF receptor superfamily member 5 | 539 | 0.273 | 0.6185 | Yes |
| 7 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 590 | 0.260 | 0.6710 | Yes |
| 8 | IL2RG | IL2RG Entrez, Source | interleukin 2 receptor, gamma (severe combined immunodeficiency) | 879 | 0.198 | 0.6922 | Yes |
| 9 | FN1 | FN1 Entrez, Source | fibronectin 1 | 1246 | 0.156 | 0.6986 | Yes |
| 10 | VTN | VTN Entrez, Source | vitronectin | 1776 | 0.118 | 0.6845 | No |
| 11 | IL2RB | IL2RB Entrez, Source | interleukin 2 receptor, beta | 2225 | 0.098 | 0.6721 | No |
| 12 | IL2 | IL2 Entrez, Source | interleukin 2 | 2282 | 0.096 | 0.6887 | No |
| 13 | IL5RA | IL5RA Entrez, Source | interleukin 5 receptor, alpha | 3448 | 0.059 | 0.6141 | No |
| 14 | IFNG | IFNG Entrez, Source | interferon, gamma | 4856 | 0.027 | 0.5143 | No |
| 15 | IL5 | IL5 Entrez, Source | interleukin 5 (colony-stimulating factor, eosinophil) | 6076 | 0.004 | 0.4236 | No |
| 16 | IL2RA | IL2RA Entrez, Source | interleukin 2 receptor, alpha | 6479 | -0.003 | 0.3941 | No |
| 17 | CD40LG | CD40LG Entrez, Source | CD40 ligand (TNF superfamily, member 5, hyper-IgM syndrome) | 7233 | -0.017 | 0.3411 | No |
| 18 | CD86 | CD86 Entrez, Source | CD86 molecule | 7686 | -0.025 | 0.3126 | No |
| 19 | TNFRSF1A | TNFRSF1A Entrez, Source | tumor necrosis factor receptor superfamily, member 1A | 8306 | -0.037 | 0.2743 | No |
| 20 | CD80 | CD80 Entrez, Source | CD80 molecule | 8652 | -0.044 | 0.2580 | No |
| 21 | IL4R | IL4R Entrez, Source | interleukin 4 receptor | 9312 | -0.058 | 0.2212 | No |
| 22 | IL4 | IL4 Entrez, Source | interleukin 4 | 11640 | -0.135 | 0.0758 | No |
| 23 | CD28 | CD28 Entrez, Source | CD28 molecule | 12792 | -0.240 | 0.0413 | No |
