Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | LEE_DENA_UP |
| Enrichment Score (ES) | 0.6930731 |
| Normalized Enrichment Score (NES) | 2.113543 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.0013260923 |
| FWER p-Value | 0.016 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | ANXA1 | ANXA1 Entrez, Source | annexin A1 | 25 | 0.995 | 0.0873 | Yes |
| 2 | RGS2 | RGS2 Entrez, Source | regulator of G-protein signalling 2, 24kDa | 50 | 0.810 | 0.1580 | Yes |
| 3 | ANKRD1 | ANKRD1 Entrez, Source | ankyrin repeat domain 1 (cardiac muscle) | 56 | 0.784 | 0.2279 | Yes |
| 4 | CD24 | CD24 Entrez, Source | CD24 molecule | 66 | 0.745 | 0.2940 | Yes |
| 5 | TM4SF4 | TM4SF4 Entrez, Source | transmembrane 4 L six family member 4 | 70 | 0.720 | 0.3583 | Yes |
| 6 | COL4A1 | COL4A1 Entrez, Source | collagen, type IV, alpha 1 | 89 | 0.680 | 0.4178 | Yes |
| 7 | LPL | LPL Entrez, Source | lipoprotein lipase | 107 | 0.646 | 0.4745 | Yes |
| 8 | BCL2A1 | BCL2A1 Entrez, Source | BCL2-related protein A1 | 147 | 0.568 | 0.5224 | Yes |
| 9 | VCAM1 | VCAM1 Entrez, Source | vascular cell adhesion molecule 1 | 183 | 0.515 | 0.5659 | Yes |
| 10 | PLAT | PLAT Entrez, Source | plasminogen activator, tissue | 321 | 0.383 | 0.5899 | Yes |
| 11 | LAMA5 | LAMA5 Entrez, Source | laminin, alpha 5 | 368 | 0.352 | 0.6179 | Yes |
| 12 | MFGE8 | MFGE8 Entrez, Source | milk fat globule-EGF factor 8 protein | 542 | 0.272 | 0.6293 | Yes |
| 13 | IGFBP1 | IGFBP1 Entrez, Source | insulin-like growth factor binding protein 1 | 596 | 0.258 | 0.6484 | Yes |
| 14 | LEPR | LEPR Entrez, Source | leptin receptor | 685 | 0.238 | 0.6631 | Yes |
| 15 | GPC3 | GPC3 Entrez, Source | glypican 3 | 757 | 0.224 | 0.6779 | Yes |
| 16 | B4GALT6 | B4GALT6 Entrez, Source | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 | 849 | 0.205 | 0.6894 | Yes |
| 17 | PTPRE | PTPRE Entrez, Source | protein tyrosine phosphatase, receptor type, E | 1082 | 0.173 | 0.6875 | Yes |
| 18 | CTSS | CTSS Entrez, Source | cathepsin S | 1264 | 0.154 | 0.6877 | Yes |
| 19 | ANXA5 | ANXA5 Entrez, Source | annexin A5 | 1367 | 0.146 | 0.6931 | Yes |
| 20 | SPP1 | SPP1 Entrez, Source | secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1) | 2345 | 0.094 | 0.6280 | No |
| 21 | PEA15 | PEA15 Entrez, Source | phosphoprotein enriched in astrocytes 15 | 2496 | 0.088 | 0.6246 | No |
| 22 | NOTCH3 | NOTCH3 Entrez, Source | Notch homolog 3 (Drosophila) | 3281 | 0.063 | 0.5713 | No |
| 23 | ID1 | ID1 Entrez, Source | inhibitor of DNA binding 1, dominant negative helix-loop-helix protein | 3286 | 0.063 | 0.5767 | No |
| 24 | FBLN2 | FBLN2 Entrez, Source | fibulin 2 | 4117 | 0.042 | 0.5180 | No |
| 25 | CPE | CPE Entrez, Source | carboxypeptidase E | 4222 | 0.039 | 0.5137 | No |
| 26 | TFF3 | TFF3 Entrez, Source | trefoil factor 3 (intestinal) | 4594 | 0.032 | 0.4887 | No |
| 27 | LGMN | LGMN Entrez, Source | legumain | 4915 | 0.026 | 0.4669 | No |
| 28 | CSN3 | CSN3 Entrez, Source | casein kappa | 5180 | 0.021 | 0.4489 | No |
| 29 | PPBP | PPBP Entrez, Source | pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) | 5909 | 0.007 | 0.3948 | No |
| 30 | LCN2 | LCN2 Entrez, Source | lipocalin 2 (oncogene 24p3) | 6435 | -0.002 | 0.3556 | No |
| 31 | PLEK | PLEK Entrez, Source | pleckstrin | 6970 | -0.012 | 0.3165 | No |
| 32 | TAGLN2 | TAGLN2 Entrez, Source | transgelin 2 | 7790 | -0.027 | 0.2573 | No |
| 33 | ANXA2 | ANXA2 Entrez, Source | annexin A2 | 8088 | -0.033 | 0.2380 | No |
| 34 | MMP12 | MMP12 Entrez, Source | matrix metallopeptidase 12 (macrophage elastase) | 8384 | -0.039 | 0.2193 | No |
| 35 | S100A9 | S100A9 Entrez, Source | S100 calcium binding protein A9 | 8582 | -0.043 | 0.2083 | No |
| 36 | GATM | GATM Entrez, Source | glycine amidinotransferase (L-arginine:glycine amidinotransferase) | 10782 | -0.100 | 0.0520 | No |
| 37 | SOX9 | SOX9 Entrez, Source | SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal) | 11038 | -0.109 | 0.0426 | No |
| 38 | CD63 | CD63 Entrez, Source | CD63 molecule | 11299 | -0.120 | 0.0339 | No |
| 39 | FABP4 | FABP4 Entrez, Source | fatty acid binding protein 4, adipocyte | 11412 | -0.125 | 0.0367 | No |
| 40 | APCS | APCS Entrez, Source | amyloid P component, serum | 11626 | -0.135 | 0.0327 | No |
| 41 | NDRG1 | NDRG1 Entrez, Source | N-myc downstream regulated gene 1 | 13268 | -0.519 | -0.0441 | No |
| 42 | MCM6 | MCM6 Entrez, Source | MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) | 13288 | -0.553 | 0.0041 | No |
