Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | LEE_E2F1_UP |
| Enrichment Score (ES) | 0.5749692 |
| Normalized Enrichment Score (NES) | 1.8173765 |
| Nominal p-value | 0.0053956835 |
| FDR q-value | 0.024729166 |
| FWER p-Value | 0.894 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | ANXA1 | ANXA1 Entrez, Source | annexin A1 | 25 | 0.995 | 0.0764 | Yes |
| 2 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 61 | 0.759 | 0.1335 | Yes |
| 3 | TM4SF4 | TM4SF4 Entrez, Source | transmembrane 4 L six family member 4 | 70 | 0.720 | 0.1896 | Yes |
| 4 | FMO3 | FMO3 Entrez, Source | flavin containing monooxygenase 3 | 94 | 0.673 | 0.2408 | Yes |
| 5 | LPL | LPL Entrez, Source | lipoprotein lipase | 107 | 0.646 | 0.2907 | Yes |
| 6 | BCL2A1 | BCL2A1 Entrez, Source | BCL2-related protein A1 | 147 | 0.568 | 0.3325 | Yes |
| 7 | GSTM2 | GSTM2 Entrez, Source | glutathione S-transferase M2 (muscle) | 200 | 0.487 | 0.3668 | Yes |
| 8 | PLSCR1 | PLSCR1 Entrez, Source | phospholipid scramblase 1 | 273 | 0.421 | 0.3945 | Yes |
| 9 | CTSE | CTSE Entrez, Source | cathepsin E | 284 | 0.411 | 0.4261 | Yes |
| 10 | PLAT | PLAT Entrez, Source | plasminogen activator, tissue | 321 | 0.383 | 0.4535 | Yes |
| 11 | DEFB1 | DEFB1 Entrez, Source | defensin, beta 1 | 429 | 0.322 | 0.4708 | Yes |
| 12 | SPARC | SPARC Entrez, Source | secreted protein, acidic, cysteine-rich (osteonectin) | 480 | 0.292 | 0.4900 | Yes |
| 13 | COL1A1 | COL1A1 Entrez, Source | collagen, type I, alpha 1 | 525 | 0.277 | 0.5085 | Yes |
| 14 | MFGE8 | MFGE8 Entrez, Source | milk fat globule-EGF factor 8 protein | 542 | 0.272 | 0.5287 | Yes |
| 15 | IGFBP1 | IGFBP1 Entrez, Source | insulin-like growth factor binding protein 1 | 596 | 0.258 | 0.5450 | Yes |
| 16 | LEPR | LEPR Entrez, Source | leptin receptor | 685 | 0.238 | 0.5572 | Yes |
| 17 | GPC3 | GPC3 Entrez, Source | glypican 3 | 757 | 0.224 | 0.5695 | Yes |
| 18 | ACTG2 | ACTG2 Entrez, Source | actin, gamma 2, smooth muscle, enteric | 919 | 0.192 | 0.5725 | Yes |
| 19 | CXADR | CXADR Entrez, Source | coxsackie virus and adenovirus receptor | 1241 | 0.157 | 0.5607 | Yes |
| 20 | CTSS | CTSS Entrez, Source | cathepsin S | 1264 | 0.154 | 0.5712 | Yes |
| 21 | ANXA5 | ANXA5 Entrez, Source | annexin A5 | 1367 | 0.146 | 0.5750 | Yes |
| 22 | RHOB | RHOB Entrez, Source | ras homolog gene family, member B | 2072 | 0.105 | 0.5303 | No |
| 23 | PALMD | PALMD Entrez, Source | palmdelphin | 2123 | 0.103 | 0.5346 | No |
| 24 | NUCB2 | NUCB2 Entrez, Source | nucleobindin 2 | 2422 | 0.091 | 0.5193 | No |
| 25 | SPINK1 | SPINK1 Entrez, Source | serine peptidase inhibitor, Kazal type 1 | 3138 | 0.068 | 0.4708 | No |
| 26 | GSTM1 | GSTM1 Entrez, Source | glutathione S-transferase M1 | 3229 | 0.065 | 0.4692 | No |
| 27 | CPE | CPE Entrez, Source | carboxypeptidase E | 4222 | 0.039 | 0.3976 | No |
| 28 | TFF3 | TFF3 Entrez, Source | trefoil factor 3 (intestinal) | 4594 | 0.032 | 0.3723 | No |
| 29 | IFIT2 | IFIT2 Entrez, Source | interferon-induced protein with tetratricopeptide repeats 2 | 6336 | -0.001 | 0.2414 | No |
| 30 | LCN2 | LCN2 Entrez, Source | lipocalin 2 (oncogene 24p3) | 6435 | -0.002 | 0.2342 | No |
| 31 | MCL1 | MCL1 Entrez, Source | myeloid cell leukemia sequence 1 (BCL2-related) | 6652 | -0.006 | 0.2184 | No |
| 32 | XDH | XDH Entrez, Source | xanthine dehydrogenase | 7075 | -0.014 | 0.1878 | No |
| 33 | TAGLN2 | TAGLN2 Entrez, Source | transgelin 2 | 7790 | -0.027 | 0.1362 | No |
| 34 | ANXA2 | ANXA2 Entrez, Source | annexin A2 | 8088 | -0.033 | 0.1165 | No |
| 35 | MMP12 | MMP12 Entrez, Source | matrix metallopeptidase 12 (macrophage elastase) | 8384 | -0.039 | 0.0974 | No |
| 36 | SPON2 | SPON2 Entrez, Source | spondin 2, extracellular matrix protein | 10694 | -0.097 | -0.0686 | No |
| 37 | CSTB | CSTB Entrez, Source | cystatin B (stefin B) | 10747 | -0.099 | -0.0648 | No |
| 38 | CD63 | CD63 Entrez, Source | CD63 molecule | 11299 | -0.120 | -0.0968 | No |
| 39 | FABP4 | FABP4 Entrez, Source | fatty acid binding protein 4, adipocyte | 11412 | -0.125 | -0.0953 | No |
| 40 | GGH | GGH Entrez, Source | gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) | 12617 | -0.213 | -0.1691 | No |
| 41 | NT5E | NT5E Entrez, Source | 5'-nucleotidase, ecto (CD73) | 12800 | -0.241 | -0.1638 | No |
| 42 | CXCL10 | CXCL10 Entrez, Source | chemokine (C-X-C motif) ligand 10 | 12851 | -0.254 | -0.1476 | No |
| 43 | CASP4 | CASP4 Entrez, Source | caspase 4, apoptosis-related cysteine peptidase | 13204 | -0.408 | -0.1420 | No |
| 44 | USP18 | USP18 Entrez, Source | ubiquitin specific peptidase 18 | 13305 | -0.626 | -0.1002 | No |
| 45 | CD74 | CD74 Entrez, Source | CD74 molecule, major histocompatibility complex, class II invariant chain | 13307 | -0.629 | -0.0508 | No |
| 46 | IFI44 | IFI44 Entrez, Source | interferon-induced protein 44 | 13315 | -0.679 | 0.0020 | No |
