Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
Upregulated in class | double_gel_24h |
GeneSet | SGCGSSAAA_V$E2F1DP2_01 |
Enrichment Score (ES) | -0.42547062 |
Normalized Enrichment Score (NES) | -1.5160028 |
Nominal p-value | 0.017114915 |
FDR q-value | 0.22194488 |
FWER p-Value | 1.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | PAQR4 | PAQR4 Entrez,  Source | progestin and adipoQ receptor family member IV | 293 | 0.407 | 0.0207 | No |
2 | ALDH6A1 | ALDH6A1 Entrez,  Source | aldehyde dehydrogenase 6 family, member A1 | 300 | 0.402 | 0.0625 | No |
3 | FKBP5 | FKBP5 Entrez,  Source | FK506 binding protein 5 | 412 | 0.330 | 0.0889 | No |
4 | MYH10 | MYH10 Entrez,  Source | myosin, heavy chain 10, non-muscle | 442 | 0.313 | 0.1195 | No |
5 | TYRO3 | TYRO3 Entrez,  Source | TYRO3 protein tyrosine kinase | 597 | 0.258 | 0.1350 | No |
6 | PLAGL1 | PLAGL1 Entrez,  Source | pleiomorphic adenoma gene-like 1 | 764 | 0.223 | 0.1459 | No |
7 | ACO2 | ACO2 Entrez,  Source | aconitase 2, mitochondrial | 940 | 0.189 | 0.1526 | No |
8 | PCSK1 | PCSK1 Entrez,  Source | proprotein convertase subtilisin/kexin type 1 | 2319 | 0.095 | 0.0587 | No |
9 | KIAA0101 | KIAA0101 Entrez,  Source | KIAA0101 | 2376 | 0.093 | 0.0643 | No |
10 | ATF5 | ATF5 Entrez,  Source | activating transcription factor 5 | 2578 | 0.084 | 0.0580 | No |
11 | ING3 | ING3 Entrez,  Source | inhibitor of growth family, member 3 | 2696 | 0.080 | 0.0576 | No |
12 | SLC9A5 | SLC9A5 Entrez,  Source | solute carrier family 9 (sodium/hydrogen exchanger), member 5 | 2790 | 0.077 | 0.0587 | No |
13 | ID3 | ID3 Entrez,  Source | inhibitor of DNA binding 3, dominant negative helix-loop-helix protein | 3479 | 0.058 | 0.0130 | No |
14 | KCNA6 | KCNA6 Entrez,  Source | potassium voltage-gated channel, shaker-related subfamily, member 6 | 3580 | 0.055 | 0.0113 | No |
15 | PRPF4B | PRPF4B Entrez,  Source | PRP4 pre-mRNA processing factor 4 homolog B (yeast) | 3623 | 0.054 | 0.0138 | No |
16 | CDC25A | CDC25A Entrez,  Source | cell division cycle 25A | 4102 | 0.042 | -0.0178 | No |
17 | MSH2 | MSH2 Entrez,  Source | mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) | 5162 | 0.021 | -0.0953 | No |
18 | GABRB3 | GABRB3 Entrez,  Source | gamma-aminobutyric acid (GABA) A receptor, beta 3 | 5640 | 0.012 | -0.1300 | No |
19 | POLD3 | POLD3 Entrez,  Source | polymerase (DNA-directed), delta 3, accessory subunit | 6034 | 0.005 | -0.1591 | No |
20 | ACBD6 | ACBD6 Entrez,  Source | acyl-Coenzyme A binding domain containing 6 | 6149 | 0.002 | -0.1675 | No |
21 | H2AFZ | H2AFZ Entrez,  Source | H2A histone family, member Z | 6380 | -0.001 | -0.1847 | No |
22 | MRPL40 | MRPL40 Entrez,  Source | mitochondrial ribosomal protein L40 | 6471 | -0.003 | -0.1911 | No |
23 | PHF5A | PHF5A Entrez,  Source | PHD finger protein 5A | 6646 | -0.006 | -0.2036 | No |
24 | KBTBD7 | KBTBD7 Entrez,  Source | kelch repeat and BTB (POZ) domain containing 7 | 7148 | -0.015 | -0.2398 | No |
25 | USP52 | USP52 Entrez,  Source | ubiquitin specific peptidase 52 | 7291 | -0.018 | -0.2486 | No |
26 | E2F1 | E2F1 Entrez,  Source | E2F transcription factor 1 | 7606 | -0.024 | -0.2698 | No |
27 | EFNA5 | EFNA5 Entrez,  Source | ephrin-A5 | 7672 | -0.025 | -0.2721 | No |
28 | CSPG2 | CSPG2 Entrez,  Source | chondroitin sulfate proteoglycan 2 (versican) | 7897 | -0.029 | -0.2859 | No |
29 | HCN3 | HCN3 Entrez,  Source | hyperpolarization activated cyclic nucleotide-gated potassium channel 3 | 8351 | -0.038 | -0.3160 | No |
30 | GATA1 | GATA1 Entrez,  Source | GATA binding protein 1 (globin transcription factor 1) | 8429 | -0.040 | -0.3176 | No |
31 | DNMT1 | DNMT1 Entrez,  Source | DNA (cytosine-5-)-methyltransferase 1 | 8474 | -0.041 | -0.3166 | No |
32 | HNRPR | HNRPR Entrez,  Source | heterogeneous nuclear ribonucleoprotein R | 8586 | -0.043 | -0.3204 | No |
33 | HOXC10 | HOXC10 Entrez,  Source | homeobox C10 | 8695 | -0.045 | -0.3238 | No |
34 | CDCA7 | CDCA7 Entrez,  Source | cell division cycle associated 7 | 9009 | -0.052 | -0.3419 | No |
35 | FMO4 | FMO4 Entrez,  Source | flavin containing monooxygenase 4 | 9249 | -0.057 | -0.3539 | No |
36 | SFRS7 | SFRS7 Entrez,  Source | splicing factor, arginine/serine-rich 7, 35kDa | 9277 | -0.058 | -0.3499 | No |
37 | FANCC | FANCC Entrez,  Source | Fanconi anemia, complementation group C | 9324 | -0.059 | -0.3472 | No |
38 | UNG | UNG Entrez,  Source | uracil-DNA glycosylase | 9382 | -0.060 | -0.3452 | No |
39 | RET | RET Entrez,  Source | ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease) | 9808 | -0.071 | -0.3697 | No |
40 | SMAD6 | SMAD6 Entrez,  Source | SMAD, mothers against DPP homolog 6 (Drosophila) | 9887 | -0.073 | -0.3679 | No |
41 | MXD3 | MXD3 Entrez,  Source | MAX dimerization protein 3 | 10205 | -0.082 | -0.3832 | No |
42 | POLD1 | POLD1 Entrez,  Source | polymerase (DNA directed), delta 1, catalytic subunit 125kDa | 10438 | -0.088 | -0.3914 | No |
43 | AK2 | AK2 Entrez,  Source | adenylate kinase 2 | 10466 | -0.089 | -0.3840 | No |
44 | UGCGL1 | UGCGL1 Entrez,  Source | UDP-glucose ceramide glucosyltransferase-like 1 | 10515 | -0.091 | -0.3781 | No |
45 | RPS20 | RPS20 Entrez,  Source | ribosomal protein S20 | 10766 | -0.100 | -0.3865 | No |
46 | TRIM39 | TRIM39 Entrez,  Source | tripartite motif-containing 39 | 11239 | -0.117 | -0.4097 | No |
47 | PCNA | PCNA Entrez,  Source | proliferating cell nuclear antigen | 11449 | -0.127 | -0.4121 | Yes |
48 | NUP62 | NUP62 Entrez,  Source | nucleoporin 62kDa | 11546 | -0.131 | -0.4056 | Yes |
49 | GLRA3 | GLRA3 Entrez,  Source | glycine receptor, alpha 3 | 11725 | -0.140 | -0.4043 | Yes |
50 | KCNS2 | KCNS2 Entrez,  Source | potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2 | 11867 | -0.148 | -0.3994 | Yes |
51 | HTF9C | HTF9C Entrez,  Source | - | 11970 | -0.155 | -0.3908 | Yes |
52 | XTP3TPA | XTP3TPA Entrez,  Source | - | 12079 | -0.163 | -0.3818 | Yes |
53 | RQCD1 | RQCD1 Entrez,  Source | RCD1 required for cell differentiation1 homolog (S. pombe) | 12095 | -0.164 | -0.3657 | Yes |
54 | MYC | MYC Entrez,  Source | v-myc myelocytomatosis viral oncogene homolog (avian) | 12249 | -0.175 | -0.3588 | Yes |
55 | SFRS10 | SFRS10 Entrez,  Source | splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila) | 12334 | -0.182 | -0.3460 | Yes |
56 | PRPS1 | PRPS1 Entrez,  Source | phosphoribosyl pyrophosphate synthetase 1 | 12339 | -0.183 | -0.3272 | Yes |
57 | NOLC1 | NOLC1 Entrez,  Source | nucleolar and coiled-body phosphoprotein 1 | 12621 | -0.214 | -0.3259 | Yes |
58 | HMGA1 | HMGA1 Entrez,  Source | high mobility group AT-hook 1 | 12748 | -0.232 | -0.3110 | Yes |
59 | SYNCRIP | SYNCRIP Entrez,  Source | synaptotagmin binding, cytoplasmic RNA interacting protein | 12783 | -0.238 | -0.2885 | Yes |
60 | NCL | NCL Entrez,  Source | nucleolin | 12857 | -0.256 | -0.2672 | Yes |
61 | ILF3 | ILF3 Entrez,  Source | interleukin enhancer binding factor 3, 90kDa | 12940 | -0.274 | -0.2445 | Yes |
62 | PTMA | PTMA Entrez,  Source | prothymosin, alpha (gene sequence 28) | 12945 | -0.275 | -0.2159 | Yes |
63 | NASP | NASP Entrez,  Source | nuclear autoantigenic sperm protein (histone-binding) | 12994 | -0.291 | -0.1890 | Yes |
64 | PIM1 | PIM1 Entrez,  Source | pim-1 oncogene | 13014 | -0.296 | -0.1593 | Yes |
65 | MCM7 | MCM7 Entrez,  Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 13101 | -0.328 | -0.1314 | Yes |
66 | DCK | DCK Entrez,  Source | deoxycytidine kinase | 13222 | -0.428 | -0.0954 | Yes |
67 | HNRPD | HNRPD Entrez,  Source | heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) | 13227 | -0.440 | -0.0496 | Yes |
68 | MCM6 | MCM6 Entrez,  Source | MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) | 13288 | -0.553 | 0.0041 | Yes |