Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_24h |
| GeneSet | STEMCELL_COMMON_UP |
| Enrichment Score (ES) | -0.38583633 |
| Normalized Enrichment Score (NES) | -1.4569789 |
| Nominal p-value | 0.015075377 |
| FDR q-value | 0.2513164 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | ELOVL6 | ELOVL6 Entrez, Source | ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) | 433 | 0.319 | 0.0005 | No |
| 2 | SLC38A2 | SLC38A2 Entrez, Source | solute carrier family 38, member 2 | 631 | 0.249 | 0.0116 | No |
| 3 | PANX3 | PANX3 Entrez, Source | pannexin 3 | 788 | 0.217 | 0.0224 | No |
| 4 | TPP2 | TPP2 Entrez, Source | tripeptidyl peptidase II | 992 | 0.183 | 0.0261 | No |
| 5 | UPP1 | UPP1 Entrez, Source | uridine phosphorylase 1 | 1070 | 0.174 | 0.0384 | No |
| 6 | ALDH7A1 | ALDH7A1 Entrez, Source | aldehyde dehydrogenase 7 family, member A1 | 1179 | 0.163 | 0.0472 | No |
| 7 | PTPN2 | PTPN2 Entrez, Source | protein tyrosine phosphatase, non-receptor type 2 | 1553 | 0.131 | 0.0327 | No |
| 8 | PEX7 | PEX7 Entrez, Source | peroxisomal biogenesis factor 7 | 1696 | 0.123 | 0.0348 | No |
| 9 | PPP1R2 | PPP1R2 Entrez, Source | protein phosphatase 1, regulatory (inhibitor) subunit 2 | 2411 | 0.091 | -0.0096 | No |
| 10 | PPIC | PPIC Entrez, Source | peptidylprolyl isomerase C (cyclophilin C) | 2432 | 0.090 | -0.0017 | No |
| 11 | PIGX | PIGX Entrez, Source | phosphatidylinositol glycan anchor biosynthesis, class X | 2532 | 0.086 | -0.0002 | No |
| 12 | SUCLG2 | SUCLG2 Entrez, Source | succinate-CoA ligase, GDP-forming, beta subunit | 2549 | 0.086 | 0.0075 | No |
| 13 | CTTN | CTTN Entrez, Source | cortactin | 3158 | 0.067 | -0.0315 | No |
| 14 | SOCS2 | SOCS2 Entrez, Source | suppressor of cytokine signaling 2 | 3280 | 0.063 | -0.0340 | No |
| 15 | FBXO8 | FBXO8 Entrez, Source | F-box protein 8 | 3451 | 0.059 | -0.0407 | No |
| 16 | ACADM | ACADM Entrez, Source | acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain | 3794 | 0.050 | -0.0613 | No |
| 17 | TARSL1 | TARSL1 Entrez, Source | threonyl-tRNA synthetase-like 1 | 4133 | 0.042 | -0.0825 | No |
| 18 | MRPL34 | MRPL34 Entrez, Source | mitochondrial ribosomal protein L34 | 4239 | 0.039 | -0.0864 | No |
| 19 | RCL1 | RCL1 Entrez, Source | RNA terminal phosphate cyclase-like 1 | 4274 | 0.038 | -0.0850 | No |
| 20 | SEC23IP | SEC23IP Entrez, Source | SEC23 interacting protein | 4430 | 0.035 | -0.0931 | No |
| 21 | RYK | RYK Entrez, Source | RYK receptor-like tyrosine kinase | 4773 | 0.028 | -0.1159 | No |
| 22 | MTERFD1 | MTERFD1 Entrez, Source | MTERF domain containing 1 | 4912 | 0.026 | -0.1237 | No |
| 23 | MSH2 | MSH2 Entrez, Source | mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) | 5162 | 0.021 | -0.1403 | No |
| 24 | MPDU1 | MPDU1 Entrez, Source | mannose-P-dolichol utilization defect 1 | 5578 | 0.013 | -0.1702 | No |
| 25 | FHL1 | FHL1 Entrez, Source | four and a half LIM domains 1 | 5660 | 0.012 | -0.1751 | No |
| 26 | KIF2A | KIF2A Entrez, Source | kinesin heavy chain member 2A | 5813 | 0.009 | -0.1857 | No |
| 27 | ARCN1 | ARCN1 Entrez, Source | archain 1 | 5911 | 0.007 | -0.1923 | No |
| 28 | CTBP2 | CTBP2 Entrez, Source | C-terminal binding protein 2 | 5997 | 0.005 | -0.1982 | No |
| 29 | YWHAB | YWHAB Entrez, Source | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide | 6058 | 0.004 | -0.2023 | No |
| 30 | TBC1D15 | TBC1D15 Entrez, Source | TBC1 domain family, member 15 | 6194 | 0.001 | -0.2124 | No |
| 31 | SMAD2 | SMAD2 Entrez, Source | SMAD, mothers against DPP homolog 2 (Drosophila) | 6213 | 0.001 | -0.2136 | No |
| 32 | KLHL7 | KLHL7 Entrez, Source | kelch-like 7 (Drosophila) | 6270 | 0.000 | -0.2178 | No |
| 33 | XRCC5 | XRCC5 Entrez, Source | X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kDa) | 6550 | -0.005 | -0.2384 | No |
| 34 | EIF4EBP1 | EIF4EBP1 Entrez, Source | eukaryotic translation initiation factor 4E binding protein 1 | 6902 | -0.011 | -0.2638 | No |
| 35 | ITGA6 | ITGA6 Entrez, Source | integrin, alpha 6 | 7051 | -0.013 | -0.2736 | No |
| 36 | UBE2D2 | UBE2D2 Entrez, Source | ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) | 7273 | -0.017 | -0.2885 | No |
| 37 | SMAD1 | SMAD1 Entrez, Source | SMAD, mothers against DPP homolog 1 (Drosophila) | 7536 | -0.022 | -0.3059 | No |
| 38 | YWHAH | YWHAH Entrez, Source | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide | 7564 | -0.023 | -0.3056 | No |
| 39 | TXNDC9 | TXNDC9 Entrez, Source | thioredoxin domain containing 9 | 7747 | -0.026 | -0.3166 | No |
| 40 | GSTA4 | GSTA4 Entrez, Source | glutathione S-transferase A4 | 7838 | -0.028 | -0.3205 | No |
| 41 | FKBP9 | FKBP9 Entrez, Source | FK506 binding protein 9, 63 kDa | 7913 | -0.029 | -0.3230 | No |
| 42 | PSMD12 | PSMD12 Entrez, Source | proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 | 7923 | -0.030 | -0.3206 | No |
| 43 | STXBP3 | STXBP3 Entrez, Source | syntaxin binding protein 3 | 7968 | -0.031 | -0.3208 | No |
| 44 | TXNL1 | TXNL1 Entrez, Source | thioredoxin-like 1 | 7977 | -0.031 | -0.3182 | No |
| 45 | ZMAT3 | ZMAT3 Entrez, Source | zinc finger, matrin type 3 | 8065 | -0.033 | -0.3213 | No |
| 46 | ITGB1 | ITGB1 Entrez, Source | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | 8134 | -0.034 | -0.3229 | No |
| 47 | STRN3 | STRN3 Entrez, Source | striatin, calmodulin binding protein 3 | 8342 | -0.038 | -0.3346 | No |
| 48 | PLS3 | PLS3 Entrez, Source | plastin 3 (T isoform) | 8424 | -0.040 | -0.3366 | No |
| 49 | KCNAB3 | KCNAB3 Entrez, Source | potassium voltage-gated channel, shaker-related subfamily, beta member 3 | 8528 | -0.042 | -0.3400 | No |
| 50 | MRPL17 | MRPL17 Entrez, Source | mitochondrial ribosomal protein L17 | 8647 | -0.044 | -0.3443 | No |
| 51 | CDKN1A | CDKN1A Entrez, Source | cyclin-dependent kinase inhibitor 1A (p21, Cip1) | 8685 | -0.045 | -0.3424 | No |
| 52 | DNAJB6 | DNAJB6 Entrez, Source | DnaJ (Hsp40) homolog, subfamily B, member 6 | 9020 | -0.052 | -0.3621 | No |
| 53 | RNF4 | RNF4 Entrez, Source | ring finger protein 4 | 9168 | -0.055 | -0.3675 | No |
| 54 | RAD23B | RAD23B Entrez, Source | RAD23 homolog B (S. cerevisiae) | 9175 | -0.055 | -0.3622 | No |
| 55 | PLA2G6 | PLA2G6 Entrez, Source | phospholipase A2, group VI (cytosolic, calcium-independent) | 9476 | -0.062 | -0.3783 | No |
| 56 | PRPSAP1 | PRPSAP1 Entrez, Source | phosphoribosyl pyrophosphate synthetase-associated protein 1 | 9536 | -0.064 | -0.3762 | No |
| 57 | UMPS | UMPS Entrez, Source | uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5'-decarboxylase) | 9665 | -0.067 | -0.3789 | Yes |
| 58 | COPS4 | COPS4 Entrez, Source | COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) | 9758 | -0.069 | -0.3786 | Yes |
| 59 | LAPTM4A | LAPTM4A Entrez, Source | lysosomal-associated protein transmembrane 4 alpha | 9810 | -0.071 | -0.3750 | Yes |
| 60 | CRSP3 | CRSP3 Entrez, Source | cofactor required for Sp1 transcriptional activation, subunit 3, 130kDa | 9853 | -0.072 | -0.3707 | Yes |
| 61 | ZCCHC10 | ZCCHC10 Entrez, Source | zinc finger, CCHC domain containing 10 | 9917 | -0.074 | -0.3677 | Yes |
| 62 | GARS | GARS Entrez, Source | glycyl-tRNA synthetase | 9975 | -0.076 | -0.3641 | Yes |
| 63 | USP10 | USP10 Entrez, Source | ubiquitin specific peptidase 10 | 10222 | -0.082 | -0.3741 | Yes |
| 64 | RFFL | RFFL Entrez, Source | ring finger and FYVE-like domain containing 1 | 10346 | -0.086 | -0.3745 | Yes |
| 65 | TBRG4 | TBRG4 Entrez, Source | transforming growth factor beta regulator 4 | 10477 | -0.090 | -0.3750 | Yes |
| 66 | NUP35 | NUP35 Entrez, Source | nucleoporin 35kDa | 10493 | -0.090 | -0.3668 | Yes |
| 67 | STATIP1 | STATIP1 Entrez, Source | signal transducer and activator of transcription 3 interacting protein 1 | 10711 | -0.097 | -0.3730 | Yes |
| 68 | LAPTM4B | LAPTM4B Entrez, Source | lysosomal associated protein transmembrane 4 beta | 10724 | -0.098 | -0.3637 | Yes |
| 69 | LSG1 | LSG1 Entrez, Source | large subunit GTPase 1 homolog (S. cerevisiae) | 10745 | -0.099 | -0.3550 | Yes |
| 70 | EIF4G2 | EIF4G2 Entrez, Source | eukaryotic translation initiation factor 4 gamma, 2 | 10777 | -0.100 | -0.3469 | Yes |
| 71 | IMPAD1 | IMPAD1 Entrez, Source | inositol monophosphatase domain containing 1 | 10815 | -0.101 | -0.3391 | Yes |
| 72 | MAP4K3 | MAP4K3 Entrez, Source | mitogen-activated protein kinase kinase kinase kinase 3 | 10875 | -0.104 | -0.3328 | Yes |
| 73 | RABGGTB | RABGGTB Entrez, Source | Rab geranylgeranyltransferase, beta subunit | 11200 | -0.116 | -0.3452 | Yes |
| 74 | MARCH7 | MARCH7 Entrez, Source | membrane-associated ring finger (C3HC4) 7 | 11303 | -0.121 | -0.3403 | Yes |
| 75 | EPRS | EPRS Entrez, Source | glutamyl-prolyl-tRNA synthetase | 11364 | -0.123 | -0.3321 | Yes |
| 76 | RPL22 | RPL22 Entrez, Source | ribosomal protein L22 | 11388 | -0.124 | -0.3209 | Yes |
| 77 | RPUSD4 | RPUSD4 Entrez, Source | RNA pseudouridylate synthase domain containing 4 | 11396 | -0.125 | -0.3084 | Yes |
| 78 | ROCK2 | ROCK2 Entrez, Source | Rho-associated, coiled-coil containing protein kinase 2 | 11450 | -0.127 | -0.2992 | Yes |
| 79 | DDX1 | DDX1 Entrez, Source | DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 | 11603 | -0.133 | -0.2968 | Yes |
| 80 | GRWD1 | GRWD1 Entrez, Source | glutamate-rich WD repeat containing 1 | 11615 | -0.134 | -0.2837 | Yes |
| 81 | RASA1 | RASA1 Entrez, Source | RAS p21 protein activator (GTPase activating protein) 1 | 11793 | -0.144 | -0.2821 | Yes |
| 82 | GNB1 | GNB1 Entrez, Source | guanine nucleotide binding protein (G protein), beta polypeptide 1 | 11879 | -0.149 | -0.2730 | Yes |
| 83 | FKBP11 | FKBP11 Entrez, Source | FK506 binding protein 11, 19 kDa | 11942 | -0.153 | -0.2617 | Yes |
| 84 | XTP3TPA | XTP3TPA Entrez, Source | - | 12079 | -0.163 | -0.2551 | Yes |
| 85 | MKI67IP | MKI67IP Entrez, Source | MKI67 (FHA domain) interacting nucleolar phosphoprotein | 12147 | -0.168 | -0.2427 | Yes |
| 86 | CIRH1A | CIRH1A Entrez, Source | cirrhosis, autosomal recessive 1A (cirhin) | 12177 | -0.170 | -0.2272 | Yes |
| 87 | RPS6KB1 | RPS6KB1 Entrez, Source | ribosomal protein S6 kinase, 70kDa, polypeptide 1 | 12220 | -0.173 | -0.2124 | Yes |
| 88 | ARIH1 | ARIH1 Entrez, Source | ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) | 12297 | -0.179 | -0.1995 | Yes |
| 89 | GCAT | GCAT Entrez, Source | glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) | 12561 | -0.206 | -0.1979 | Yes |
| 90 | PDCD2 | PDCD2 Entrez, Source | programmed cell death 2 | 12564 | -0.206 | -0.1766 | Yes |
| 91 | GCLM | GCLM Entrez, Source | glutamate-cysteine ligase, modifier subunit | 12784 | -0.238 | -0.1683 | Yes |
| 92 | SLC4A7 | SLC4A7 Entrez, Source | solute carrier family 4, sodium bicarbonate cotransporter, member 7 | 12805 | -0.242 | -0.1446 | Yes |
| 93 | DICER1 | DICER1 Entrez, Source | Dicer1, Dcr-1 homolog (Drosophila) | 12873 | -0.260 | -0.1227 | Yes |
| 94 | TXNRD1 | TXNRD1 Entrez, Source | thioredoxin reductase 1 | 12967 | -0.282 | -0.1004 | Yes |
| 95 | DPH5 | DPH5 Entrez, Source | DPH5 homolog (S. cerevisiae) | 12995 | -0.291 | -0.0721 | Yes |
| 96 | GNL2 | GNL2 Entrez, Source | guanine nucleotide binding protein-like 2 (nucleolar) | 13025 | -0.300 | -0.0430 | Yes |
| 97 | RNF138 | RNF138 Entrez, Source | ring finger protein 138 | 13055 | -0.309 | -0.0131 | Yes |
| 98 | XPO1 | XPO1 Entrez, Source | exportin 1 (CRM1 homolog, yeast) | 13111 | -0.334 | 0.0174 | Yes |
