Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | TGFBETA_C2_UP |
| Enrichment Score (ES) | 0.72313833 |
| Normalized Enrichment Score (NES) | 1.7608144 |
| Nominal p-value | 0.009433962 |
| FDR q-value | 0.037200365 |
| FWER p-Value | 0.991 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 12 | 1.254 | 0.3653 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 43 | 0.843 | 0.6092 | Yes |
| 3 | MARCKSL1 | MARCKSL1 Entrez, Source | MARCKS-like 1 | 337 | 0.371 | 0.6955 | Yes |
| 4 | TIMP1 | TIMP1 Entrez, Source | TIMP metallopeptidase inhibitor 1 | 1095 | 0.171 | 0.6887 | Yes |
| 5 | FN1 | FN1 Entrez, Source | fibronectin 1 | 1246 | 0.156 | 0.7231 | Yes |
| 6 | CDH6 | CDH6 Entrez, Source | cadherin 6, type 2, K-cadherin (fetal kidney) | 1797 | 0.117 | 0.7160 | No |
| 7 | MMP14 | MMP14 Entrez, Source | matrix metallopeptidase 14 (membrane-inserted) | 3176 | 0.066 | 0.6320 | No |
| 8 | LRP1 | LRP1 Entrez, Source | low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) | 4204 | 0.039 | 0.5665 | No |
| 9 | RHOG | RHOG Entrez, Source | ras homolog gene family, member G (rho G) | 4364 | 0.036 | 0.5652 | No |
| 10 | WNT2B | WNT2B Entrez, Source | wingless-type MMTV integration site family, member 2B | 5411 | 0.016 | 0.4915 | No |
| 11 | ICAM1 | ICAM1 Entrez, Source | intercellular adhesion molecule 1 (CD54), human rhinovirus receptor | 6591 | -0.005 | 0.4046 | No |
| 12 | DVL1 | DVL1 Entrez, Source | dishevelled, dsh homolog 1 (Drosophila) | 6668 | -0.007 | 0.4009 | No |
| 13 | MMP3 | MMP3 Entrez, Source | matrix metallopeptidase 3 (stromelysin 1, progelatinase) | 9259 | -0.057 | 0.2232 | No |
| 14 | JUP | JUP Entrez, Source | junction plakoglobin | 9963 | -0.075 | 0.1925 | No |
| 15 | ITGB2 | ITGB2 Entrez, Source | integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) | 10160 | -0.081 | 0.2013 | No |
| 16 | ARHGDIA | ARHGDIA Entrez, Source | Rho GDP dissociation inhibitor (GDI) alpha | 11482 | -0.128 | 0.1396 | No |
