Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | TSA_HEPATOMA_CANCER_UP |
| Enrichment Score (ES) | 0.67026675 |
| Normalized Enrichment Score (NES) | 1.8671197 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.016862866 |
| FWER p-Value | 0.696 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 12 | 1.254 | 0.2193 | Yes |
| 2 | CTGF | CTGF Entrez, Source | connective tissue growth factor | 37 | 0.888 | 0.3734 | Yes |
| 3 | CD9 | CD9 Entrez, Source | CD9 molecule | 41 | 0.871 | 0.5262 | Yes |
| 4 | TIMP2 | TIMP2 Entrez, Source | TIMP metallopeptidase inhibitor 2 | 49 | 0.810 | 0.6679 | Yes |
| 5 | VEGFC | VEGFC Entrez, Source | vascular endothelial growth factor C | 1410 | 0.142 | 0.5907 | Yes |
| 6 | BAD | BAD Entrez, Source | BCL2-antagonist of cell death | 1530 | 0.133 | 0.6050 | Yes |
| 7 | IGFBP2 | IGFBP2 Entrez, Source | insulin-like growth factor binding protein 2, 36kDa | 1556 | 0.131 | 0.6262 | Yes |
| 8 | VTN | VTN Entrez, Source | vitronectin | 1776 | 0.118 | 0.6304 | Yes |
| 9 | TGFB1 | TGFB1 Entrez, Source | transforming growth factor, beta 1 (Camurati-Engelmann disease) | 2076 | 0.105 | 0.6263 | Yes |
| 10 | NGFR | NGFR Entrez, Source | nerve growth factor receptor (TNFR superfamily, member 16) | 2094 | 0.104 | 0.6433 | Yes |
| 11 | FASTK | FASTK Entrez, Source | Fas-activated serine/threonine kinase | 2227 | 0.098 | 0.6506 | Yes |
| 12 | BSG | BSG Entrez, Source | basigin (Ok blood group) | 2357 | 0.093 | 0.6573 | Yes |
| 13 | ARHGDIB | ARHGDIB Entrez, Source | Rho GDP dissociation inhibitor (GDI) beta | 2541 | 0.086 | 0.6587 | Yes |
| 14 | JUNB | JUNB Entrez, Source | jun B proto-oncogene | 2752 | 0.078 | 0.6567 | Yes |
| 15 | ANK1 | ANK1 Entrez, Source | ankyrin 1, erythrocytic | 2898 | 0.074 | 0.6588 | Yes |
| 16 | PDGFRB | PDGFRB Entrez, Source | platelet-derived growth factor receptor, beta polypeptide | 2919 | 0.074 | 0.6703 | Yes |
| 17 | MMP11 | MMP11 Entrez, Source | matrix metallopeptidase 11 (stromelysin 3) | 3445 | 0.059 | 0.6412 | No |
| 18 | RHOG | RHOG Entrez, Source | ras homolog gene family, member G (rho G) | 4364 | 0.036 | 0.5787 | No |
| 19 | CD8B | CD8B Entrez, Source | CD8b molecule | 6176 | 0.002 | 0.4430 | No |
| 20 | CDKN2C | CDKN2C Entrez, Source | cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) | 6502 | -0.004 | 0.4192 | No |
| 21 | CAV2 | CAV2 Entrez, Source | caveolin 2 | 7012 | -0.012 | 0.3832 | No |
| 22 | ITGA7 | ITGA7 Entrez, Source | integrin, alpha 7 | 7298 | -0.018 | 0.3649 | No |
| 23 | CASP9 | CASP9 Entrez, Source | caspase 9, apoptosis-related cysteine peptidase | 7532 | -0.022 | 0.3513 | No |
| 24 | LUM | LUM Entrez, Source | lumican | 8919 | -0.050 | 0.2560 | No |
| 25 | PLA2G6 | PLA2G6 Entrez, Source | phospholipase A2, group VI (cytosolic, calcium-independent) | 9476 | -0.062 | 0.2252 | No |
| 26 | JUP | JUP Entrez, Source | junction plakoglobin | 9963 | -0.075 | 0.2019 | No |
| 27 | QSCN6 | QSCN6 Entrez, Source | quiescin Q6 | 10424 | -0.088 | 0.1828 | No |
| 28 | FBN2 | FBN2 Entrez, Source | fibrillin 2 (congenital contractural arachnodactyly) | 10457 | -0.089 | 0.1961 | No |
| 29 | HBEGF | HBEGF Entrez, Source | heparin-binding EGF-like growth factor | 11219 | -0.117 | 0.1595 | No |
