Details for gene set V$ATF1

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_24h_repos
Upregulated in class	double_gel_8d
GeneSet	V$ATF1_Q6
Enrichment Score (ES)	0.5287935
Normalized Enrichment Score (NES)	1.9230572
Nominal p-value	0.0
FDR q-value	0.010080401
FWER p-Value	0.411

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	FOS	FOS Entrez, Source	v-fos FBJ murine osteosarcoma viral oncogene homolog	3	1.622	0.1238	Yes
2	MAF	MAF Entrez, Source	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	31	0.935	0.1933	Yes
3	CLDN7	CLDN7 Entrez, Source	claudin 7	36	0.888	0.2608	Yes
4	PCK1	PCK1 Entrez, Source	phosphoenolpyruvate carboxykinase 1 (soluble)	127	0.610	0.3006	Yes
5	AQP7	AQP7 Entrez, Source	aquaporin 7	167	0.536	0.3387	Yes
6	NCALD	NCALD Entrez, Source	neurocalcin delta	225	0.463	0.3698	Yes
7	HS3ST2	HS3ST2 Entrez, Source	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	308	0.394	0.3937	Yes
8	CCND1	CCND1 Entrez, Source	cyclin D1	391	0.341	0.4136	Yes
9	HSD11B1	HSD11B1 Entrez, Source	hydroxysteroid (11-beta) dehydrogenase 1	432	0.320	0.4350	Yes
10	COL1A1	COL1A1 Entrez, Source	collagen, type I, alpha 1	525	0.277	0.4492	Yes
11	PAK1	PAK1 Entrez, Source	p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)	643	0.247	0.4592	Yes
12	SPRED2	SPRED2 Entrez, Source	sprouty-related, EVH1 domain containing 2	670	0.242	0.4758	Yes
13	PDGFA	PDGFA Entrez, Source	platelet-derived growth factor alpha polypeptide	729	0.230	0.4890	Yes
14	LMO4	LMO4 Entrez, Source	LIM domain only 4	824	0.209	0.4978	Yes
15	FOXP1	FOXP1 Entrez, Source	forkhead box P1	833	0.207	0.5131	Yes
16	FLT1	FLT1 Entrez, Source	fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)	835	0.207	0.5288	Yes
17	CDX2	CDX2 Entrez, Source	caudal type homeobox transcription factor 2	1170	0.163	0.5160	No
18	MAGED2	MAGED2 Entrez, Source	melanoma antigen family D, 2	1191	0.162	0.5269	No
19	TNFRSF12A	TNFRSF12A Entrez, Source	tumor necrosis factor receptor superfamily, member 12A	1374	0.145	0.5242	No
20	ARG2	ARG2 Entrez, Source	arginase, type II	1606	0.128	0.5165	No
21	SLC38A1	SLC38A1 Entrez, Source	solute carrier family 38, member 1	1676	0.124	0.5208	No
22	CBX8	CBX8 Entrez, Source	chromobox homolog 8 (Pc class homolog, Drosophila)	1783	0.118	0.5218	No
23	VIP	VIP Entrez, Source	vasoactive intestinal peptide	1849	0.114	0.5256	No
24	TPM4	TPM4 Entrez, Source	tropomyosin 4	2293	0.096	0.4994	No
25	CSF3	CSF3 Entrez, Source	colony stimulating factor 3 (granulocyte)	2306	0.095	0.5058	No
26	PCSK1	PCSK1 Entrez, Source	proprotein convertase subtilisin/kexin type 1	2319	0.095	0.5121	No
27	EHD1	EHD1 Entrez, Source	EH-domain containing 1	2429	0.090	0.5108	No
28	PPARGC1B	PPARGC1B Entrez, Source	peroxisome proliferative activated receptor, gamma, coactivator 1, beta	2782	0.077	0.4901	No
29	MAPK10	MAPK10 Entrez, Source	mitogen-activated protein kinase 10	2865	0.075	0.4896	No
30	GNB4	GNB4 Entrez, Source	guanine nucleotide binding protein (G protein), beta polypeptide 4	3031	0.070	0.4825	No
31	ID1	ID1 Entrez, Source	inhibitor of DNA binding 1, dominant negative helix-loop-helix protein	3286	0.063	0.4682	No
32	KCNA6	KCNA6 Entrez, Source	potassium voltage-gated channel, shaker-related subfamily, member 6	3580	0.055	0.4502	No
33	NOVA1	NOVA1 Entrez, Source	neuro-oncological ventral antigen 1	3664	0.053	0.4480	No
34	ELOVL5	ELOVL5 Entrez, Source	ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)	4036	0.044	0.4233	No
35	MAP1LC3A	MAP1LC3A Entrez, Source	microtubule-associated protein 1 light chain 3 alpha	4039	0.044	0.4265	No
36	GRASP	GRASP Entrez, Source	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	4059	0.043	0.4284	No
37	CD37	CD37 Entrez, Source	CD37 molecule	4350	0.037	0.4093	No
38	ELL2	ELL2 Entrez, Source	elongation factor, RNA polymerase II, 2	4354	0.037	0.4118	No
39	PARD6A	PARD6A Entrez, Source	par-6 partitioning defective 6 homolog alpha (C.elegans)	4374	0.036	0.4132	No
40	ESRRG	ESRRG Entrez, Source	estrogen-related receptor gamma	4402	0.036	0.4139	No
41	SNAP25	SNAP25 Entrez, Source	synaptosomal-associated protein, 25kDa	4406	0.036	0.4164	No
42	CSF2	CSF2 Entrez, Source	colony stimulating factor 2 (granulocyte-macrophage)	4451	0.035	0.4157	No
43	STC2	STC2 Entrez, Source	stanniocalcin 2	4456	0.035	0.4181	No
44	WISP1	WISP1 Entrez, Source	WNT1 inducible signaling pathway protein 1	4562	0.033	0.4126	No
45	NTRK2	NTRK2 Entrez, Source	neurotrophic tyrosine kinase, receptor, type 2	4574	0.033	0.4143	No
46	BRE	BRE Entrez, Source	brain and reproductive organ-expressed (TNFRSF1A modulator)	4635	0.031	0.4121	No
47	KCNIP2	KCNIP2 Entrez, Source	Kv channel interacting protein 2	4705	0.030	0.4092	No
48	CHGB	CHGB Entrez, Source	chromogranin B (secretogranin 1)	4906	0.026	0.3961	No
49	THRA	THRA Entrez, Source	thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)	4984	0.024	0.3921	No
50	DOK1	DOK1 Entrez, Source	docking protein 1, 62kDa (downstream of tyrosine kinase 1)	5013	0.024	0.3918	No
51	CALD1	CALD1 Entrez, Source	caldesmon 1	5081	0.023	0.3885	No
52	HTR2C	HTR2C Entrez, Source	5-hydroxytryptamine (serotonin) receptor 2C	5202	0.020	0.3810	No
53	JUND	JUND Entrez, Source	jun D proto-oncogene	5289	0.019	0.3759	No
54	GABRG2	GABRG2 Entrez, Source	gamma-aminobutyric acid (GABA) A receptor, gamma 2	5368	0.017	0.3713	No
55	ISL1	ISL1 Entrez, Source	ISL1 transcription factor, LIM/homeodomain, (islet-1)	5512	0.014	0.3616	No
56	PPARD	PPARD Entrez, Source	peroxisome proliferative activated receptor, delta	5532	0.014	0.3612	No
57	SOX11	SOX11 Entrez, Source	SRY (sex determining region Y)-box 11	5542	0.014	0.3616	No
58	USP48	USP48 Entrez, Source	ubiquitin specific peptidase 48	5600	0.013	0.3583	No
59	SNF1LK	SNF1LK Entrez, Source	SNF1-like kinase	5650	0.012	0.3555	No
60	BNIP3L	BNIP3L Entrez, Source	BCL2/adenovirus E1B 19kDa interacting protein 3-like	5729	0.010	0.3504	No
61	FOXD3	FOXD3 Entrez, Source	forkhead box D3	5876	0.008	0.3399	No
62	PDE4D	PDE4D Entrez, Source	phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila)	5890	0.007	0.3395	No
63	PDE1A	PDE1A Entrez, Source	phosphodiesterase 1A, calmodulin-dependent	5967	0.006	0.3342	No
64	PER1	PER1 Entrez, Source	period homolog 1 (Drosophila)	6161	0.002	0.3198	No
65	MCAM	MCAM Entrez, Source	melanoma cell adhesion molecule	6217	0.001	0.3157	No
66	LHX1	LHX1 Entrez, Source	LIM homeobox 1	6258	0.000	0.3127	No
67	SYT13	SYT13 Entrez, Source	synaptotagmin XIII	6317	-0.000	0.3084	No
68	SCG2	SCG2 Entrez, Source	secretogranin II (chromogranin C)	6379	-0.001	0.3038	No
69	DNTTIP1	DNTTIP1 Entrez, Source	deoxynucleotidyltransferase, terminal, interacting protein 1	6469	-0.003	0.2973	No
70	ATP6V0C	ATP6V0C Entrez, Source	ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c	6588	-0.005	0.2888	No
71	NRXN1	NRXN1 Entrez, Source	neurexin 1	6602	-0.006	0.2883	No
72	UCN	UCN Entrez, Source	urocortin	6604	-0.006	0.2886	No
73	RNF44	RNF44 Entrez, Source	ring finger protein 44	6743	-0.008	0.2788	No
74	SCAMP5	SCAMP5 Entrez, Source	secretory carrier membrane protein 5	6796	-0.009	0.2756	No
75	IKBKB	IKBKB Entrez, Source	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	6828	-0.009	0.2739	No
76	KCNA5	KCNA5 Entrez, Source	potassium voltage-gated channel, shaker-related subfamily, member 5	6863	-0.010	0.2721	No
77	ARL6IP2	ARL6IP2 Entrez, Source	ADP-ribosylation factor-like 6 interacting protein 2	6899	-0.010	0.2703	No
78	BSND	BSND Entrez, Source	Bartter syndrome, infantile, with sensorineural deafness (Barttin)	6977	-0.012	0.2654	No
79	TOP1	TOP1 Entrez, Source	topoisomerase (DNA) I	7017	-0.013	0.2634	No
80	ADARB2	ADARB2 Entrez, Source	adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)	7111	-0.014	0.2574	No
81	SST	SST Entrez, Source	somatostatin	7317	-0.018	0.2433	No
82	TH	TH Entrez, Source	tyrosine hydroxylase	7473	-0.021	0.2332	No
83	CREB3L2	CREB3L2 Entrez, Source	cAMP responsive element binding protein 3-like 2	7503	-0.022	0.2327	No
84	CACNA1G	CACNA1G Entrez, Source	calcium channel, voltage-dependent, alpha 1G subunit	7509	-0.022	0.2340	No
85	TRIB1	TRIB1 Entrez, Source	tribbles homolog 1 (Drosophila)	7632	-0.024	0.2266	No
86	GDNF	GDNF Entrez, Source	glial cell derived neurotrophic factor	7663	-0.025	0.2262	No
87	DYRK3	DYRK3 Entrez, Source	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	7808	-0.028	0.2174	No
88	GPM6B	GPM6B Entrez, Source	glycoprotein M6B	8060	-0.032	0.2009	No
89	YWHAZ	YWHAZ Entrez, Source	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	8135	-0.034	0.1980	No
90	PTPRU	PTPRU Entrez, Source	protein tyrosine phosphatase, receptor type, U	8180	-0.035	0.1973	No
91	HAND1	HAND1 Entrez, Source	heart and neural crest derivatives expressed 1	8367	-0.039	0.1862	No
92	FGF6	FGF6 Entrez, Source	fibroblast growth factor 6	8436	-0.040	0.1841	No
93	HOXC10	HOXC10 Entrez, Source	homeobox C10	8695	-0.045	0.1681	No
94	CDC42	CDC42 Entrez, Source	cell division cycle 42 (GTP binding protein, 25kDa)	8893	-0.050	0.1570	No
95	CREM	CREM Entrez, Source	cAMP responsive element modulator	8985	-0.051	0.1540	No
96	HOXA4	HOXA4 Entrez, Source	homeobox A4	9080	-0.054	0.1510	No
97	SULT4A1	SULT4A1 Entrez, Source	sulfotransferase family 4A, member 1	9281	-0.058	0.1403	No
98	SLC18A2	SLC18A2 Entrez, Source	solute carrier family 18 (vesicular monoamine), member 2	9786	-0.070	0.1076	No
99	EEF2	EEF2 Entrez, Source	eukaryotic translation elongation factor 2	9787	-0.070	0.1130	No
100	RET	RET Entrez, Source	ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)	9808	-0.071	0.1169	No
101	SMAD6	SMAD6 Entrez, Source	SMAD, mothers against DPP homolog 6 (Drosophila)	9887	-0.073	0.1166	No
102	LDHA	LDHA Entrez, Source	lactate dehydrogenase A	9934	-0.075	0.1188	No
103	ANGPT1	ANGPT1 Entrez, Source	angiopoietin 1	10068	-0.079	0.1148	No
104	RPL4	RPL4 Entrez, Source	ribosomal protein L4	10242	-0.083	0.1080	No
105	RNPS1	RNPS1 Entrez, Source	RNA binding protein S1, serine-rich domain	10325	-0.085	0.1083	No
106	VGF	VGF Entrez, Source	VGF nerve growth factor inducible	10474	-0.089	0.1040	No
107	AREG	AREG Entrez, Source	amphiregulin (schwannoma-derived growth factor)	10487	-0.090	0.1099	No
108	NFIL3	NFIL3 Entrez, Source	nuclear factor, interleukin 3 regulated	10654	-0.095	0.1047	No
109	PPM2C	PPM2C Entrez, Source	protein phosphatase 2C, magnesium-dependent, catalytic subunit	10702	-0.097	0.1086	No
110	CNN3	CNN3 Entrez, Source	calponin 3, acidic	11041	-0.109	0.0914	No
111	EIF4A1	EIF4A1 Entrez, Source	eukaryotic translation initiation factor 4A, isoform 1	11080	-0.111	0.0970	No
112	TRIM39	TRIM39 Entrez, Source	tripartite motif-containing 39	11239	-0.117	0.0941	No
113	PAFAH1B1	PAFAH1B1 Entrez, Source	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa	11805	-0.145	0.0624	No
114	EIF4A2	EIF4A2 Entrez, Source	eukaryotic translation initiation factor 4A, isoform 2	11996	-0.157	0.0600	No
115	DDIT3	DDIT3 Entrez, Source	DNA-damage-inducible transcript 3	13285	-0.545	0.0043	No