Details for gene set V$ATF4

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_24h_repos
Upregulated in class	double_gel_8d
GeneSet	V$ATF4_Q2
Enrichment Score (ES)	0.4792546
Normalized Enrichment Score (NES)	1.7514621
Nominal p-value	0.0
FDR q-value	0.03979663
FWER p-Value	0.995

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	FOS	FOS Entrez, Source	v-fos FBJ murine osteosarcoma viral oncogene homolog	3	1.622	0.0973	Yes
2	LAMC2	LAMC2 Entrez, Source	laminin, gamma 2	23	1.021	0.1572	Yes
3	MAF	MAF Entrez, Source	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	31	0.935	0.2128	Yes
4	PAH	PAH Entrez, Source	phenylalanine hydroxylase	133	0.597	0.2411	Yes
5	SGK	SGK Entrez, Source	serum/glucocorticoid regulated kinase	191	0.498	0.2667	Yes
6	USP2	USP2 Entrez, Source	ubiquitin specific peptidase 2	207	0.480	0.2944	Yes
7	MYBPH	MYBPH Entrez, Source	myosin binding protein H	259	0.431	0.3164	Yes
8	HS3ST2	HS3ST2 Entrez, Source	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	308	0.394	0.3364	Yes
9	JAG1	JAG1 Entrez, Source	jagged 1 (Alagille syndrome)	318	0.386	0.3590	Yes
10	KCNN2	KCNN2 Entrez, Source	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	403	0.336	0.3728	Yes
11	HCST	HCST Entrez, Source	hematopoietic cell signal transducer	517	0.280	0.3811	Yes
12	PKIA	PKIA Entrez, Source	protein kinase (cAMP-dependent, catalytic) inhibitor alpha	588	0.260	0.3914	Yes
13	SLC38A2	SLC38A2 Entrez, Source	solute carrier family 38, member 2	631	0.249	0.4032	Yes
14	PAK1	PAK1 Entrez, Source	p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)	643	0.247	0.4172	Yes
15	CXCL16	CXCL16 Entrez, Source	chemokine (C-X-C motif) ligand 16	734	0.229	0.4241	Yes
16	ICA1	ICA1 Entrez, Source	islet cell autoantigen 1, 69kDa	753	0.226	0.4363	Yes
17	LMO4	LMO4 Entrez, Source	LIM domain only 4	824	0.209	0.4436	Yes
18	RAB7	RAB7 Entrez, Source	RAB7, member RAS oncogene family	891	0.197	0.4504	Yes
19	DIRC2	DIRC2 Entrez, Source	disrupted in renal carcinoma 2	926	0.191	0.4593	Yes
20	PRICKLE1	PRICKLE1 Entrez, Source	prickle homolog 1 (Drosophila)	927	0.191	0.4708	Yes
21	PITX2	PITX2 Entrez, Source	paired-like homeodomain transcription factor 2	1047	0.177	0.4724	Yes
22	DUSP1	DUSP1 Entrez, Source	dual specificity phosphatase 1	1266	0.154	0.4652	Yes
23	PPP2R5B	PPP2R5B Entrez, Source	protein phosphatase 2, regulatory subunit B (B56), beta isoform	1497	0.135	0.4559	Yes
24	GRM3	GRM3 Entrez, Source	glutamate receptor, metabotropic 3	1523	0.133	0.4620	Yes
25	ZFYVE27	ZFYVE27 Entrez, Source	zinc finger, FYVE domain containing 27	1573	0.130	0.4661	Yes
26	DCTN1	DCTN1 Entrez, Source	dynactin 1 (p150, glued homolog, Drosophila)	1578	0.130	0.4736	Yes
27	ARG2	ARG2 Entrez, Source	arginase, type II	1606	0.128	0.4793	Yes
28	MAOA	MAOA Entrez, Source	monoamine oxidase A	2159	0.101	0.4436	No
29	LTBP1	LTBP1 Entrez, Source	latent transforming growth factor beta binding protein 1	2261	0.097	0.4418	No
30	TPM4	TPM4 Entrez, Source	tropomyosin 4	2293	0.096	0.4452	No
31	PLSCR3	PLSCR3 Entrez, Source	phospholipid scramblase 3	2348	0.094	0.4467	No
32	ABCA2	ABCA2 Entrez, Source	ATP-binding cassette, sub-family A (ABC1), member 2	2463	0.089	0.4434	No
33	EDG5	EDG5 Entrez, Source	endothelial differentiation, sphingolipid G-protein-coupled receptor, 5	2479	0.089	0.4476	No
34	BRAF	BRAF Entrez, Source	v-raf murine sarcoma viral oncogene homolog B1	2605	0.083	0.4432	No
35	CX36	CX36 Entrez, Source	-	2695	0.080	0.4413	No
36	ECM1	ECM1 Entrez, Source	extracellular matrix protein 1	2718	0.080	0.4444	No
37	PNRC1	PNRC1 Entrez, Source	proline-rich nuclear receptor coactivator 1	2915	0.074	0.4340	No
38	CENTA1	CENTA1 Entrez, Source	centaurin, alpha 1	3167	0.067	0.4190	No
39	ID1	ID1 Entrez, Source	inhibitor of DNA binding 1, dominant negative helix-loop-helix protein	3286	0.063	0.4139	No
40	F2RL2	F2RL2 Entrez, Source	coagulation factor II (thrombin) receptor-like 2	4002	0.045	0.3624	No
41	ELOVL5	ELOVL5 Entrez, Source	ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)	4036	0.044	0.3626	No
42	MAP1LC3A	MAP1LC3A Entrez, Source	microtubule-associated protein 1 light chain 3 alpha	4039	0.044	0.3650	No
43	MESDC1	MESDC1 Entrez, Source	mesoderm development candidate 1	4119	0.042	0.3616	No
44	MPP2	MPP2 Entrez, Source	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	4203	0.039	0.3577	No
45	PEX12	PEX12 Entrez, Source	peroxisomal biogenesis factor 12	4261	0.038	0.3556	No
46	GNAS	GNAS Entrez, Source	GNAS complex locus	4431	0.035	0.3450	No
47	NR4A3	NR4A3 Entrez, Source	nuclear receptor subfamily 4, group A, member 3	4753	0.029	0.3224	No
48	CLSTN3	CLSTN3 Entrez, Source	calsyntenin 3	4999	0.024	0.3053	No
49	ALDOA	ALDOA Entrez, Source	aldolase A, fructose-bisphosphate	5039	0.023	0.3038	No
50	CAPN6	CAPN6 Entrez, Source	calpain 6	5247	0.020	0.2893	No
51	CPT1B	CPT1B Entrez, Source	carnitine palmitoyltransferase 1B (muscle)	5265	0.019	0.2892	No
52	NRXN2	NRXN2 Entrez, Source	neurexin 2	5341	0.018	0.2846	No
53	PSD	PSD Entrez, Source	pleckstrin and Sec7 domain containing	5571	0.013	0.2680	No
54	USP48	USP48 Entrez, Source	ubiquitin specific peptidase 48	5600	0.013	0.2667	No
55	SNF1LK	SNF1LK Entrez, Source	SNF1-like kinase	5650	0.012	0.2637	No
56	FOXD3	FOXD3 Entrez, Source	forkhead box D3	5876	0.008	0.2471	No
57	PDE4D	PDE4D Entrez, Source	phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila)	5890	0.007	0.2466	No
58	USP14	USP14 Entrez, Source	ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase)	5928	0.007	0.2442	No
59	KCNJ2	KCNJ2 Entrez, Source	potassium inwardly-rectifying channel, subfamily J, member 2	6048	0.004	0.2354	No
60	NUP98	NUP98 Entrez, Source	nucleoporin 98kDa	6268	0.000	0.2189	No
61	MRGPRF	MRGPRF Entrez, Source	MAS-related GPR, member F	6355	-0.001	0.2124	No
62	CDC5L	CDC5L Entrez, Source	CDC5 cell division cycle 5-like (S. pombe)	6411	-0.002	0.2084	No
63	BSN	BSN Entrez, Source	bassoon (presynaptic cytomatrix protein)	6585	-0.005	0.1956	No
64	CBX3	CBX3 Entrez, Source	chromobox homolog 3 (HP1 gamma homolog, Drosophila)	6679	-0.007	0.1890	No
65	RNF44	RNF44 Entrez, Source	ring finger protein 44	6743	-0.008	0.1847	No
66	SCAMP5	SCAMP5 Entrez, Source	secretory carrier membrane protein 5	6796	-0.009	0.1813	No
67	PAX3	PAX3 Entrez, Source	paired box gene 3 (Waardenburg syndrome 1)	6824	-0.009	0.1798	No
68	IKBKB	IKBKB Entrez, Source	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	6828	-0.009	0.1801	No
69	SMARCB1	SMARCB1 Entrez, Source	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	7003	-0.012	0.1677	No
70	MAP3K7IP2	MAP3K7IP2 Entrez, Source	mitogen-activated protein kinase kinase kinase 7 interacting protein 2	7170	-0.015	0.1560	No
71	TAF11	TAF11 Entrez, Source	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa	7434	-0.020	0.1373	No
72	CDK5R1	CDK5R1 Entrez, Source	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	7459	-0.021	0.1368	No
73	AP2M1	AP2M1 Entrez, Source	adaptor-related protein complex 2, mu 1 subunit	7464	-0.021	0.1377	No
74	SMAD1	SMAD1 Entrez, Source	SMAD, mothers against DPP homolog 1 (Drosophila)	7536	-0.022	0.1337	No
75	TRIB1	TRIB1 Entrez, Source	tribbles homolog 1 (Drosophila)	7632	-0.024	0.1280	No
76	GABRA1	GABRA1 Entrez, Source	gamma-aminobutyric acid (GABA) A receptor, alpha 1	7649	-0.025	0.1282	No
77	PSMD12	PSMD12 Entrez, Source	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	7923	-0.030	0.1093	No
78	FLNC	FLNC Entrez, Source	filamin C, gamma (actin binding protein 280)	7939	-0.030	0.1100	No
79	GPM6B	GPM6B Entrez, Source	glycoprotein M6B	8060	-0.032	0.1029	No
80	PTPRU	PTPRU Entrez, Source	protein tyrosine phosphatase, receptor type, U	8180	-0.035	0.0960	No
81	HTATIP	HTATIP Entrez, Source	HIV-1 Tat interacting protein, 60kDa	8212	-0.035	0.0958	No
82	GNL1	GNL1 Entrez, Source	guanine nucleotide binding protein-like 1	8250	-0.036	0.0951	No
83	FGF14	FGF14 Entrez, Source	fibroblast growth factor 14	8295	-0.037	0.0941	No
84	PAK3	PAK3 Entrez, Source	p21 (CDKN1A)-activated kinase 3	8370	-0.039	0.0908	No
85	CTCF	CTCF Entrez, Source	CCCTC-binding factor (zinc finger protein)	8374	-0.039	0.0929	No
86	TITF1	TITF1 Entrez, Source	thyroid transcription factor 1	8658	-0.045	0.0742	No
87	HOXC10	HOXC10 Entrez, Source	homeobox C10	8695	-0.045	0.0742	No
88	ITM2B	ITM2B Entrez, Source	integral membrane protein 2B	8720	-0.046	0.0751	No
89	GGN	GGN Entrez, Source	gametogenetin	8728	-0.046	0.0773	No
90	SYT2	SYT2 Entrez, Source	synaptotagmin II	9102	-0.054	0.0524	No
91	AHR	AHR Entrez, Source	aryl hydrocarbon receptor	9118	-0.054	0.0545	No
92	AHI1	AHI1 Entrez, Source	Abelson helper integration site 1	9218	-0.056	0.0504	No
93	SULT4A1	SULT4A1 Entrez, Source	sulfotransferase family 4A, member 1	9281	-0.058	0.0492	No
94	LEPROTL1	LEPROTL1 Entrez, Source	leptin receptor overlapping transcript-like 1	9362	-0.060	0.0467	No
95	ITPKC	ITPKC Entrez, Source	inositol 1,4,5-trisphosphate 3-kinase C	9405	-0.061	0.0472	No
96	DDX3X	DDX3X Entrez, Source	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	9594	-0.065	0.0369	No
97	GPR56	GPR56 Entrez, Source	G protein-coupled receptor 56	9622	-0.066	0.0388	No
98	SLC18A2	SLC18A2 Entrez, Source	solute carrier family 18 (vesicular monoamine), member 2	9786	-0.070	0.0307	No
99	PSME4	PSME4 Entrez, Source	proteasome (prosome, macropain) activator subunit 4	9912	-0.074	0.0257	No
100	NDRG2	NDRG2 Entrez, Source	NDRG family member 2	9944	-0.075	0.0278	No
101	ROM1	ROM1 Entrez, Source	retinal outer segment membrane protein 1	9956	-0.075	0.0315	No
102	MRRF	MRRF Entrez, Source	mitochondrial ribosome recycling factor	10343	-0.086	0.0074	No
103	PABPC1	PABPC1 Entrez, Source	poly(A) binding protein, cytoplasmic 1	10349	-0.086	0.0122	No
104	ATF1	ATF1 Entrez, Source	activating transcription factor 1	10381	-0.087	0.0151	No
105	HNRPAB	HNRPAB Entrez, Source	heterogeneous nuclear ribonucleoprotein A/B	10402	-0.087	0.0188	No
106	NF1	NF1 Entrez, Source	neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease)	10565	-0.092	0.0121	No
107	PRR3	PRR3 Entrez, Source	proline rich 3	10589	-0.093	0.0160	No
108	PDAP1	PDAP1 Entrez, Source	PDGFA associated protein 1	10592	-0.093	0.0214	No
109	PSMD4	PSMD4 Entrez, Source	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	10681	-0.096	0.0206	No
110	PPM2C	PPM2C Entrez, Source	protein phosphatase 2C, magnesium-dependent, catalytic subunit	10702	-0.097	0.0249	No
111	HHEX	HHEX Entrez, Source	homeobox, hematopoietically expressed	10765	-0.099	0.0262	No
112	PPP1R10	PPP1R10 Entrez, Source	protein phosphatase 1, regulatory subunit 10	10924	-0.106	0.0206	No
113	CIRBP	CIRBP Entrez, Source	cold inducible RNA binding protein	10982	-0.108	0.0227	No
114	EIF4G1	EIF4G1 Entrez, Source	eukaryotic translation initiation factor 4 gamma, 1	10984	-0.108	0.0291	No
115	TRIM39	TRIM39 Entrez, Source	tripartite motif-containing 39	11239	-0.117	0.0169	No
116	ADCK4	ADCK4 Entrez, Source	aarF domain containing kinase 4	11243	-0.118	0.0238	No
117	CDH23	CDH23 Entrez, Source	cadherin-like 23	11301	-0.120	0.0267	No
118	TDG	TDG Entrez, Source	thymine-DNA glycosylase	11393	-0.124	0.0273	No
119	MRPS18B	MRPS18B Entrez, Source	mitochondrial ribosomal protein S18B	11505	-0.129	0.0267	No
120	BMF	BMF Entrez, Source	Bcl2 modifying factor	11710	-0.139	0.0196	No
121	PAFAH1B1	PAFAH1B1 Entrez, Source	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa	11805	-0.145	0.0212	No
122	MSX2	MSX2 Entrez, Source	msh homeobox homolog 2 (Drosophila)	11856	-0.147	0.0262	No
123	GSK3B	GSK3B Entrez, Source	glycogen synthase kinase 3 beta	11989	-0.156	0.0256	No
124	NR4A2	NR4A2 Entrez, Source	nuclear receptor subfamily 4, group A, member 2	12585	-0.209	-0.0068	No
125	SV2B	SV2B Entrez, Source	synaptic vesicle glycoprotein 2B	12618	-0.213	0.0036	No
126	GTF2A1	GTF2A1 Entrez, Source	general transcription factor IIA, 1, 19/37kDa	12822	-0.246	0.0030	No
127	HN1	HN1 Entrez, Source	hematological and neurological expressed 1	12908	-0.269	0.0127	No
128	XPO1	XPO1 Entrez, Source	exportin 1 (CRM1 homolog, yeast)	13111	-0.334	0.0175	No