Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
Upregulated in class | double_gel_24h |
GeneSet | V$E2F_Q6 |
Enrichment Score (ES) | -0.4 |
Normalized Enrichment Score (NES) | -1.5107603 |
Nominal p-value | 0.009411764 |
FDR q-value | 0.22620149 |
FWER p-Value | 1.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | SOAT1 | SOAT1 Entrez,  Source | sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 | 100 | 0.661 | 0.0540 | No |
2 | PAQR4 | PAQR4 Entrez,  Source | progestin and adipoQ receptor family member IV | 293 | 0.407 | 0.0775 | No |
3 | ALDH6A1 | ALDH6A1 Entrez,  Source | aldehyde dehydrogenase 6 family, member A1 | 300 | 0.402 | 0.1145 | No |
4 | MYH10 | MYH10 Entrez,  Source | myosin, heavy chain 10, non-muscle | 442 | 0.313 | 0.1330 | No |
5 | TYRO3 | TYRO3 Entrez,  Source | TYRO3 protein tyrosine kinase | 597 | 0.258 | 0.1454 | No |
6 | ACO2 | ACO2 Entrez,  Source | aconitase 2, mitochondrial | 940 | 0.189 | 0.1372 | No |
7 | SLC38A1 | SLC38A1 Entrez,  Source | solute carrier family 38, member 1 | 1676 | 0.124 | 0.0933 | No |
8 | PCSK1 | PCSK1 Entrez,  Source | proprotein convertase subtilisin/kexin type 1 | 2319 | 0.095 | 0.0537 | No |
9 | KIAA0101 | KIAA0101 Entrez,  Source | KIAA0101 | 2376 | 0.093 | 0.0581 | No |
10 | ATF5 | ATF5 Entrez,  Source | activating transcription factor 5 | 2578 | 0.084 | 0.0508 | No |
11 | ING3 | ING3 Entrez,  Source | inhibitor of growth family, member 3 | 2696 | 0.080 | 0.0494 | No |
12 | SLC9A5 | SLC9A5 Entrez,  Source | solute carrier family 9 (sodium/hydrogen exchanger), member 5 | 2790 | 0.077 | 0.0496 | No |
13 | RAB11B | RAB11B Entrez,  Source | RAB11B, member RAS oncogene family | 3071 | 0.069 | 0.0349 | No |
14 | ID3 | ID3 Entrez,  Source | inhibitor of DNA binding 3, dominant negative helix-loop-helix protein | 3479 | 0.058 | 0.0096 | No |
15 | SP3 | SP3 Entrez,  Source | Sp3 transcription factor | 3514 | 0.057 | 0.0124 | No |
16 | KCNA6 | KCNA6 Entrez,  Source | potassium voltage-gated channel, shaker-related subfamily, member 6 | 3580 | 0.055 | 0.0126 | No |
17 | PRPF4B | PRPF4B Entrez,  Source | PRP4 pre-mRNA processing factor 4 homolog B (yeast) | 3623 | 0.054 | 0.0145 | No |
18 | CORT | CORT Entrez,  Source | cortistatin | 3683 | 0.053 | 0.0149 | No |
19 | CDC25A | CDC25A Entrez,  Source | cell division cycle 25A | 4102 | 0.042 | -0.0127 | No |
20 | TMPO | TMPO Entrez,  Source | thymopoietin | 4229 | 0.039 | -0.0186 | No |
21 | SLC6A4 | SLC6A4 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 | 4511 | 0.034 | -0.0366 | No |
22 | PPP1CC | PPP1CC Entrez,  Source | protein phosphatase 1, catalytic subunit, gamma isoform | 4996 | 0.024 | -0.0709 | No |
23 | PVRL1 | PVRL1 Entrez,  Source | poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin) | 5060 | 0.023 | -0.0735 | No |
24 | MSH2 | MSH2 Entrez,  Source | mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) | 5162 | 0.021 | -0.0792 | No |
25 | SLCO3A1 | SLCO3A1 Entrez,  Source | solute carrier organic anion transporter family, member 3A1 | 5268 | 0.019 | -0.0853 | No |
26 | SUMO1 | SUMO1 Entrez,  Source | SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) | 5474 | 0.015 | -0.0993 | No |
27 | GABRB3 | GABRB3 Entrez,  Source | gamma-aminobutyric acid (GABA) A receptor, beta 3 | 5640 | 0.012 | -0.1106 | No |
28 | POLD3 | POLD3 Entrez,  Source | polymerase (DNA-directed), delta 3, accessory subunit | 6034 | 0.005 | -0.1399 | No |
29 | POLA2 | POLA2 Entrez,  Source | polymerase (DNA directed), alpha 2 (70kD subunit) | 6089 | 0.003 | -0.1436 | No |
30 | ACBD6 | ACBD6 Entrez,  Source | acyl-Coenzyme A binding domain containing 6 | 6149 | 0.002 | -0.1479 | No |
31 | H2AFZ | H2AFZ Entrez,  Source | H2A histone family, member Z | 6380 | -0.001 | -0.1651 | No |
32 | GRIA4 | GRIA4 Entrez,  Source | glutamate receptor, ionotrophic, AMPA 4 | 6422 | -0.002 | -0.1680 | No |
33 | MRPL40 | MRPL40 Entrez,  Source | mitochondrial ribosomal protein L40 | 6471 | -0.003 | -0.1713 | No |
34 | NELL2 | NELL2 Entrez,  Source | NEL-like 2 (chicken) | 6480 | -0.003 | -0.1716 | No |
35 | PHF5A | PHF5A Entrez,  Source | PHD finger protein 5A | 6646 | -0.006 | -0.1835 | No |
36 | KBTBD7 | KBTBD7 Entrez,  Source | kelch repeat and BTB (POZ) domain containing 7 | 7148 | -0.015 | -0.2199 | No |
37 | UXT | UXT Entrez,  Source | ubiquitously-expressed transcript | 7154 | -0.015 | -0.2189 | No |
38 | USP52 | USP52 Entrez,  Source | ubiquitin specific peptidase 52 | 7291 | -0.018 | -0.2275 | No |
39 | KCND2 | KCND2 Entrez,  Source | potassium voltage-gated channel, Shal-related subfamily, member 2 | 7584 | -0.023 | -0.2474 | No |
40 | E2F1 | E2F1 Entrez,  Source | E2F transcription factor 1 | 7606 | -0.024 | -0.2468 | No |
41 | EFNA5 | EFNA5 Entrez,  Source | ephrin-A5 | 7672 | -0.025 | -0.2494 | No |
42 | PAX6 | PAX6 Entrez,  Source | paired box gene 6 (aniridia, keratitis) | 7732 | -0.026 | -0.2514 | No |
43 | CSPG2 | CSPG2 Entrez,  Source | chondroitin sulfate proteoglycan 2 (versican) | 7897 | -0.029 | -0.2611 | No |
44 | HCN3 | HCN3 Entrez,  Source | hyperpolarization activated cyclic nucleotide-gated potassium channel 3 | 8351 | -0.038 | -0.2917 | No |
45 | CTCF | CTCF Entrez,  Source | CCCTC-binding factor (zinc finger protein) | 8374 | -0.039 | -0.2897 | No |
46 | DNMT1 | DNMT1 Entrez,  Source | DNA (cytosine-5-)-methyltransferase 1 | 8474 | -0.041 | -0.2934 | No |
47 | HNRPR | HNRPR Entrez,  Source | heterogeneous nuclear ribonucleoprotein R | 8586 | -0.043 | -0.2977 | No |
48 | HOXC10 | HOXC10 Entrez,  Source | homeobox C10 | 8695 | -0.045 | -0.3017 | No |
49 | NRP2 | NRP2 Entrez,  Source | neuropilin 2 | 8752 | -0.047 | -0.3016 | No |
50 | CDCA7 | CDCA7 Entrez,  Source | cell division cycle associated 7 | 9009 | -0.052 | -0.3160 | No |
51 | FMO4 | FMO4 Entrez,  Source | flavin containing monooxygenase 4 | 9249 | -0.057 | -0.3288 | No |
52 | SFRS7 | SFRS7 Entrez,  Source | splicing factor, arginine/serine-rich 7, 35kDa | 9277 | -0.058 | -0.3254 | No |
53 | UNG | UNG Entrez,  Source | uracil-DNA glycosylase | 9382 | -0.060 | -0.3277 | No |
54 | FANCD2 | FANCD2 Entrez,  Source | Fanconi anemia, complementation group D2 | 9601 | -0.065 | -0.3380 | No |
55 | EPHB1 | EPHB1 Entrez,  Source | EPH receptor B1 | 9688 | -0.068 | -0.3382 | No |
56 | SMAD6 | SMAD6 Entrez,  Source | SMAD, mothers against DPP homolog 6 (Drosophila) | 9887 | -0.073 | -0.3463 | No |
57 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 9896 | -0.074 | -0.3401 | No |
58 | MXD3 | MXD3 Entrez,  Source | MAX dimerization protein 3 | 10205 | -0.082 | -0.3557 | No |
59 | HMGN2 | HMGN2 Entrez,  Source | high-mobility group nucleosomal binding domain 2 | 10359 | -0.086 | -0.3592 | No |
60 | POLD1 | POLD1 Entrez,  Source | polymerase (DNA directed), delta 1, catalytic subunit 125kDa | 10438 | -0.088 | -0.3569 | No |
61 | AK2 | AK2 Entrez,  Source | adenylate kinase 2 | 10466 | -0.089 | -0.3506 | No |
62 | UGCGL1 | UGCGL1 Entrez,  Source | UDP-glucose ceramide glucosyltransferase-like 1 | 10515 | -0.091 | -0.3458 | No |
63 | GSPT1 | GSPT1 Entrez,  Source | G1 to S phase transition 1 | 10578 | -0.093 | -0.3418 | No |
64 | DDX17 | DDX17 Entrez,  Source | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 | 11050 | -0.110 | -0.3671 | No |
65 | RHD | RHD Entrez,  Source | Rh blood group, D antigen | 11128 | -0.113 | -0.3624 | No |
66 | PCNA | PCNA Entrez,  Source | proliferating cell nuclear antigen | 11449 | -0.127 | -0.3747 | No |
67 | NUP62 | NUP62 Entrez,  Source | nucleoporin 62kDa | 11546 | -0.131 | -0.3697 | No |
68 | WEE1 | WEE1 Entrez,  Source | WEE1 homolog (S. pombe) | 11948 | -0.154 | -0.3857 | Yes |
69 | UFD1L | UFD1L Entrez,  Source | ubiquitin fusion degradation 1 like (yeast) | 11964 | -0.154 | -0.3724 | Yes |
70 | HTF9C | HTF9C Entrez,  Source | - | 11970 | -0.155 | -0.3584 | Yes |
71 | NUP153 | NUP153 Entrez,  Source | nucleoporin 153kDa | 11979 | -0.156 | -0.3445 | Yes |
72 | SFRS2 | SFRS2 Entrez,  Source | splicing factor, arginine/serine-rich 2 | 12039 | -0.160 | -0.3340 | Yes |
73 | XTP3TPA | XTP3TPA Entrez,  Source | - | 12079 | -0.163 | -0.3218 | Yes |
74 | RQCD1 | RQCD1 Entrez,  Source | RCD1 required for cell differentiation1 homolog (S. pombe) | 12095 | -0.164 | -0.3077 | Yes |
75 | SFRS12 | SFRS12 Entrez,  Source | splicing factor, arginine/serine-rich 12 | 12159 | -0.169 | -0.2967 | Yes |
76 | STMN1 | STMN1 Entrez,  Source | stathmin 1/oncoprotein 18 | 12244 | -0.175 | -0.2867 | Yes |
77 | SFRS10 | SFRS10 Entrez,  Source | splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila) | 12334 | -0.182 | -0.2765 | Yes |
78 | PRPS1 | PRPS1 Entrez,  Source | phosphoribosyl pyrophosphate synthetase 1 | 12339 | -0.183 | -0.2598 | Yes |
79 | KPNB1 | KPNB1 Entrez,  Source | karyopherin (importin) beta 1 | 12477 | -0.196 | -0.2519 | Yes |
80 | NOLC1 | NOLC1 Entrez,  Source | nucleolar and coiled-body phosphoprotein 1 | 12621 | -0.214 | -0.2428 | Yes |
81 | NCL | NCL Entrez,  Source | nucleolin | 12857 | -0.256 | -0.2367 | Yes |
82 | ILF3 | ILF3 Entrez,  Source | interleukin enhancer binding factor 3, 90kDa | 12940 | -0.274 | -0.2174 | Yes |
83 | NASP | NASP Entrez,  Source | nuclear autoantigenic sperm protein (histone-binding) | 12994 | -0.291 | -0.1942 | Yes |
84 | PIM1 | PIM1 Entrez,  Source | pim-1 oncogene | 13014 | -0.296 | -0.1681 | Yes |
85 | HNRPA1 | HNRPA1 Entrez,  Source | heterogeneous nuclear ribonucleoprotein A1 | 13080 | -0.318 | -0.1434 | Yes |
86 | MCM7 | MCM7 Entrez,  Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 13101 | -0.328 | -0.1144 | Yes |
87 | DCK | DCK Entrez,  Source | deoxycytidine kinase | 13222 | -0.428 | -0.0836 | Yes |
88 | HNRPD | HNRPD Entrez,  Source | heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) | 13227 | -0.440 | -0.0429 | Yes |
89 | MCM6 | MCM6 Entrez,  Source | MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) | 13288 | -0.553 | 0.0041 | Yes |