Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_24h.class.cls
#double_gel_8d_versus_double_gel_24h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_24h_repos
Upregulated in classdouble_gel_8d
GeneSetV$HNF3B_01
Enrichment Score (ES)0.5735075
Normalized Enrichment Score (NES)1.981983
Nominal p-value0.0
FDR q-value0.0067341975
FWER p-Value0.204
Table: GSEA Results Summary



Fig 1: Enrichment plot: V$HNF3B_01   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ANXA1ANXA1
Entrez,  Source
annexin A1250.9950.0924Yes
2WNT4WNT4
Entrez,  Source
wingless-type MMTV integration site family, member 4420.8520.1718Yes
3GPM6AGPM6A
Entrez,  Source
glycoprotein M6A1650.5400.2138Yes
4EGR2EGR2
Entrez,  Source
early growth response 2 (Krox-20 homolog, Drosophila)3120.3900.2397Yes
5RBP4RBP4
Entrez,  Source
retinol binding protein 4, plasma3230.3780.2748Yes
6PLA1APLA1A
Entrez,  Source
phospholipase A1 member A4350.3170.2964Yes
7SERPIND1SERPIND1
Entrez,  Source
serpin peptidase inhibitor, clade D (heparin cofactor), member 15040.2840.3182Yes
8FUT8FUT8
Entrez,  Source
fucosyltransferase 8 (alpha (1,6) fucosyltransferase)5670.2650.3386Yes
9TYRO3TYRO3
Entrez,  Source
TYRO3 protein tyrosine kinase5970.2580.3608Yes
10ENPEPENPEP
Entrez,  Source
glutamyl aminopeptidase (aminopeptidase A)6580.2440.3793Yes
11BAIAP2BAIAP2
Entrez,  Source
BAI1-associated protein 27680.2220.3921Yes
12CITED2CITED2
Entrez,  Source
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 27930.2150.4107Yes
13TTRTTR
Entrez,  Source
transthyretin (prealbumin, amyloidosis type I)7980.2130.4306Yes
14NCDNNCDN
Entrez,  Source
neurochondrin8090.2120.4499Yes
15LMO4LMO4
Entrez,  Source
LIM domain only 48240.2090.4686Yes
16SULF2SULF2
Entrez,  Source
sulfatase 28850.1970.4828Yes
17IER3IER3
Entrez,  Source
immediate early response 39080.1950.4996Yes
18GFRA1GFRA1
Entrez,  Source
GDNF family receptor alpha 19470.1880.5146Yes
19RAB3IPRAB3IP
Entrez,  Source
RAB3A interacting protein (rabin3)9640.1870.5310Yes
20CYR61CYR61
Entrez,  Source
cysteine-rich, angiogenic inducer, 6110620.1750.5403Yes
21PPARGC1APPARGC1A
Entrez,  Source
peroxisome proliferative activated receptor, gamma, coactivator 1, alpha10660.1740.5566Yes
22PLAG1PLAG1
Entrez,  Source
pleiomorphic adenoma gene 111150.1690.5690Yes
23DUSP1DUSP1
Entrez,  Source
dual specificity phosphatase 112660.1540.5723Yes
24ZFHX1BZFHX1B
Entrez,  Source
zinc finger homeobox 1b14270.1400.5735Yes
25ATP2A3ATP2A3
Entrez,  Source
ATPase, Ca++ transporting, ubiquitous18370.1150.5536No
26LCP2LCP2
Entrez,  Source
lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)18770.1130.5613No
27TNMDTNMD
Entrez,  Source
tenomodulin25500.0860.5187No
28FOXA2FOXA2
Entrez,  Source
forkhead box A225830.0840.5243No
29ELMO3ELMO3
Entrez,  Source
engulfment and cell motility 326510.0820.5270No
30TWIST2TWIST2
Entrez,  Source
twist homolog 2 (Drosophila)27570.0780.5264No
31OTX2OTX2
Entrez,  Source
orthodenticle homolog 2 (Drosophila)28310.0760.5282No
32PDCD4PDCD4
Entrez,  Source
programmed cell death 4 (neoplastic transformation inhibitor)30350.0700.5195No
33LMO3LMO3
Entrez,  Source
LIM domain only 3 (rhombotin-like 2)30370.0700.5261No
34ID1ID1
Entrez,  Source
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein32860.0630.5133No
35TLE4TLE4
Entrez,  Source
transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)35060.0570.5022No
36ATP1B4ATP1B4
Entrez,  Source
ATPase, (Na+)/K+ transporting, beta 4 polypeptide36120.0540.4995No
37FLOT1FLOT1
Entrez,  Source
flotillin 136930.0520.4984No
38CDK6CDK6
Entrez,  Source
cyclin-dependent kinase 637250.0520.5010No
39POU3F4POU3F4
Entrez,  Source
POU domain, class 3, transcription factor 438430.0490.4968No
40LHX5LHX5
Entrez,  Source
LIM homeobox 538940.0470.4975No
41BAMBIBAMBI
Entrez,  Source
BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)40350.0440.4911No
42SSH3SSH3
Entrez,  Source
slingshot homolog 3 (Drosophila)41100.0420.4895No
43RUNX2RUNX2
Entrez,  Source
runt-related transcription factor 242460.0390.4829No
44SLC6A4SLC6A4
Entrez,  Source
solute carrier family 6 (neurotransmitter transporter, serotonin), member 445110.0340.4662No
45NFIBNFIB
Entrez,  Source
nuclear factor I/B47970.0280.4474No
46CYP26B1CYP26B1
Entrez,  Source
cytochrome P450, family 26, subfamily B, polypeptide 148290.0270.4476No
47PVRL1PVRL1
Entrez,  Source
poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin)50600.0230.4324No
48CALD1CALD1
Entrez,  Source
caldesmon 150810.0230.4331No
49IBSPIBSP
Entrez,  Source
integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)51700.0210.4284No
50PLCB1PLCB1
Entrez,  Source
phospholipase C, beta 1 (phosphoinositide-specific)51710.0210.4304No
51OPRM1OPRM1
Entrez,  Source
opioid receptor, mu 153870.0170.4158No
52MCART1MCART1
Entrez,  Source
mitochondrial carrier triple repeat 155370.0140.4058No
53PHEXPHEX
Entrez,  Source
phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets)56190.0120.4009No
54SLC16A6SLC16A6
Entrez,  Source
solute carrier family 16, member 6 (monocarboxylic acid transporter 7)60190.0050.3713No
55IL5IL5
Entrez,  Source
interleukin 5 (colony-stimulating factor, eosinophil)60760.0040.3674No
56TNFTNF
Entrez,  Source
tumor necrosis factor (TNF superfamily, member 2)61810.0010.3597No
57TAC1TAC1
Entrez,  Source
tachykinin, precursor 1 (substance K, substance P, neurokinin 1, neurokinin 2, neuromedin L, neurokinin alpha, neuropeptide K, neuropeptide gamma)6693-0.0070.3218No
58TOB1TOB1
Entrez,  Source
transducer of ERBB2, 16785-0.0090.3157No
59PNMA1PNMA1
Entrez,  Source
paraneoplastic antigen MA16990-0.0120.3015No
60DNAJA4DNAJA4
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily A, member 47050-0.0130.2983No
61FGF13FGF13
Entrez,  Source
fibroblast growth factor 137222-0.0160.2870No
62HAS2HAS2
Entrez,  Source
hyaluronan synthase 27235-0.0170.2876No
63ITPKBITPKB
Entrez,  Source
inositol 1,4,5-trisphosphate 3-kinase B7323-0.0180.2828No
64ORC4LORC4L
Entrez,  Source
origin recognition complex, subunit 4-like (yeast)7357-0.0190.2821No
65CACNA1HCACNA1H
Entrez,  Source
calcium channel, voltage-dependent, alpha 1H subunit7393-0.0200.2813No
66NFATC4NFATC4
Entrez,  Source
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 47625-0.0240.2662No
67GABRA1GABRA1
Entrez,  Source
gamma-aminobutyric acid (GABA) A receptor, alpha 17649-0.0250.2667No
68INHBAINHBA
Entrez,  Source
inhibin, beta A (activin A, activin AB alpha polypeptide)7768-0.0270.2604No
69PPP1CBPPP1CB
Entrez,  Source
protein phosphatase 1, catalytic subunit, beta isoform7860-0.0280.2562No
70LTALTA
Entrez,  Source
lymphotoxin alpha (TNF superfamily, member 1)8246-0.0360.2306No
71CHN2CHN2
Entrez,  Source
chimerin (chimaerin) 28642-0.0440.2050No
72VAX1VAX1
Entrez,  Source
ventral anterior homeobox 18915-0.0500.1892No
73NEUROD2NEUROD2
Entrez,  Source
neurogenic differentiation 29017-0.0520.1866No
74HOXA4HOXA4
Entrez,  Source
homeobox A49080-0.0540.1870No
75EPHB1EPHB1
Entrez,  Source
EPH receptor B19688-0.0680.1476No
76DMDDMD
Entrez,  Source
dystrophin (muscular dystrophy, Duchenne and Becker types)9896-0.0740.1389No
77ABT1ABT1
Entrez,  Source
activator of basal transcription 110127-0.0800.1291No
78ACCN5ACCN5
Entrez,  Source
amiloride-sensitive cation channel 5, intestinal10267-0.0830.1266No
79DRD3DRD3
Entrez,  Source
dopamine receptor D310311-0.0850.1314No
80PPP1R10PPP1R10
Entrez,  Source
protein phosphatase 1, regulatory subunit 1010924-0.1060.0952No
81CYLN2CYLN2
Entrez,  Source
cytoplasmic linker 211077-0.1110.0943No
82ID2ID2
Entrez,  Source
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein11229-0.1170.0940No
83MRPS18BMRPS18B
Entrez,  Source
mitochondrial ribosomal protein S18B11505-0.1290.0854No
84ISG20ISG20
Entrez,  Source
interferon stimulated exonuclease gene 20kDa11943-0.1530.0670No
85NFIXNFIX
Entrez,  Source
nuclear factor I/X (CCAAT-binding transcription factor)12029-0.1590.0756No
86GTF2A1GTF2A1
Entrez,  Source
general transcription factor IIA, 1, 19/37kDa12822-0.2460.0392No
Table: GSEA details [plain text format]



Fig 2: V$HNF3B_01   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: V$HNF3B_01: Random ES distribution   
Gene set null distribution of ES for V$HNF3B_01