Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_24h_repos
Upregulated in class	double_gel_8d
GeneSet	V$SRF_C
Enrichment Score (ES)	0.47507045
Normalized Enrichment Score (NES)	1.7253336
Nominal p-value	0.0
FDR q-value	0.047012076
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	FOS	FOS Entrez, Source	v-fos FBJ murine osteosarcoma viral oncogene homolog	3	1.622	0.1024	Yes
2	COL1A2	COL1A2 Entrez, Source	collagen, type I, alpha 2	12	1.254	0.1812	Yes
3	SLC25A4	SLC25A4 Entrez, Source	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4	13	1.195	0.2568	Yes
4	TAGLN	TAGLN Entrez, Source	transgelin	40	0.874	0.3101	Yes
5	ACTA1	ACTA1 Entrez, Source	actin, alpha 1, skeletal muscle	60	0.762	0.3569	Yes
6	RGS3	RGS3 Entrez, Source	regulator of G-protein signalling 3	301	0.402	0.3642	Yes
7	EGR2	EGR2 Entrez, Source	early growth response 2 (Krox-20 homolog, Drosophila)	312	0.390	0.3881	Yes
8	POPDC2	POPDC2 Entrez, Source	popeye domain containing 2	327	0.374	0.4107	Yes
9	RAB30	RAB30 Entrez, Source	RAB30, member RAS oncogene family	363	0.357	0.4306	Yes
10	RNF39	RNF39 Entrez, Source	ring finger protein 39	568	0.265	0.4320	Yes
11	PPP2R3A	PPP2R3A Entrez, Source	protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha	603	0.257	0.4456	Yes
12	DNAJB4	DNAJB4 Entrez, Source	DnaJ (Hsp40) homolog, subfamily B, member 4	645	0.246	0.4581	Yes
13	FOXP1	FOXP1 Entrez, Source	forkhead box P1	833	0.207	0.4571	Yes
14	ACTG2	ACTG2 Entrez, Source	actin, gamma 2, smooth muscle, enteric	919	0.192	0.4628	Yes
15	PLN	PLN Entrez, Source	phospholamban	994	0.183	0.4688	Yes
16	CYR61	CYR61 Entrez, Source	cysteine-rich, angiogenic inducer, 61	1062	0.175	0.4748	Yes
17	ITGB6	ITGB6 Entrez, Source	integrin, beta 6	1195	0.161	0.4751	Yes
18	ZFHX1B	ZFHX1B Entrez, Source	zinc finger homeobox 1b	1427	0.140	0.4665	No
19	EGR1	EGR1 Entrez, Source	early growth response 1	1666	0.124	0.4564	No
20	ANXA6	ANXA6 Entrez, Source	annexin A6	1714	0.122	0.4606	No
21	NR4A1	NR4A1 Entrez, Source	nuclear receptor subfamily 4, group A, member 1	1785	0.118	0.4627	No
22	NR2F2	NR2F2 Entrez, Source	nuclear receptor subfamily 2, group F, member 2	2048	0.106	0.4496	No
23	ASPA	ASPA Entrez, Source	aspartoacylase (Canavan disease)	2090	0.104	0.4531	No
24	MYO1E	MYO1E Entrez, Source	myosin IE	2117	0.103	0.4576	No
25	LTBP1	LTBP1 Entrez, Source	latent transforming growth factor beta binding protein 1	2261	0.097	0.4530	No
26	DUSP6	DUSP6 Entrez, Source	dual specificity phosphatase 6	2490	0.088	0.4413	No
27	IER2	IER2 Entrez, Source	immediate early response 2	2518	0.087	0.4448	No
28	JUNB	JUNB Entrez, Source	jun B proto-oncogene	2752	0.078	0.4321	No
29	TGFB1I1	TGFB1I1 Entrez, Source	transforming growth factor beta 1 induced transcript 1	2804	0.077	0.4331	No
30	MBNL1	MBNL1 Entrez, Source	muscleblind-like (Drosophila)	2930	0.073	0.4283	No
31	GPR20	GPR20 Entrez, Source	G protein-coupled receptor 20	3108	0.068	0.4193	No
32	DAPK3	DAPK3 Entrez, Source	death-associated protein kinase 3	3290	0.063	0.4096	No
33	ACTN1	ACTN1 Entrez, Source	actinin, alpha 1	3460	0.059	0.4005	No
34	MAPK14	MAPK14 Entrez, Source	mitogen-activated protein kinase 14	3602	0.055	0.3933	No
35	EGR4	EGR4 Entrez, Source	early growth response 4	3630	0.054	0.3947	No
36	EGR3	EGR3 Entrez, Source	early growth response 3	3704	0.052	0.3925	No
37	POU3F4	POU3F4 Entrez, Source	POU domain, class 3, transcription factor 4	3843	0.049	0.3852	No
38	GFPT2	GFPT2 Entrez, Source	glutamine-fructose-6-phosphate transaminase 2	4020	0.044	0.3746	No
39	MYO1B	MYO1B Entrez, Source	myosin IB	4074	0.043	0.3734	No
40	SSH3	SSH3 Entrez, Source	slingshot homolog 3 (Drosophila)	4110	0.042	0.3734	No
41	TNNC1	TNNC1 Entrez, Source	troponin C type 1 (slow)	4157	0.041	0.3725	No
42	DSTN	DSTN Entrez, Source	destrin (actin depolymerizing factor)	4198	0.040	0.3720	No
43	RHOJ	RHOJ Entrez, Source	ras homolog gene family, member J	4296	0.038	0.3670	No
44	IL17B	IL17B Entrez, Source	interleukin 17B	4928	0.025	0.3210	No
45	CALD1	CALD1 Entrez, Source	caldesmon 1	5081	0.023	0.3109	No
46	SLC2A4	SLC2A4 Entrez, Source	solute carrier family 2 (facilitated glucose transporter), member 4	5283	0.019	0.2969	No
47	FGFRL1	FGFRL1 Entrez, Source	fibroblast growth factor receptor-like 1	5385	0.017	0.2904	No
48	CACNA1B	CACNA1B Entrez, Source	calcium channel, voltage-dependent, L type, alpha 1B subunit	5446	0.016	0.2868	No
49	AOC3	AOC3 Entrez, Source	amine oxidase, copper containing 3 (vascular adhesion protein 1)	5594	0.013	0.2765	No
50	TLE3	TLE3 Entrez, Source	transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	5643	0.012	0.2737	No
51	PLCB3	PLCB3 Entrez, Source	phospholipase C, beta 3 (phosphatidylinositol-specific)	5675	0.011	0.2721	No
52	AKAP12	AKAP12 Entrez, Source	A kinase (PRKA) anchor protein (gravin) 12	5716	0.011	0.2697	No
53	ACTB	ACTB Entrez, Source	actin, beta	5788	0.009	0.2649	No
54	PADI2	PADI2 Entrez, Source	peptidyl arginine deiminase, type II	5804	0.009	0.2644	No
55	KCNK3	KCNK3 Entrez, Source	potassium channel, subfamily K, member 3	5898	0.007	0.2578	No
56	NR2F1	NR2F1 Entrez, Source	nuclear receptor subfamily 2, group F, member 1	5904	0.007	0.2579	No
57	GRK6	GRK6 Entrez, Source	G protein-coupled receptor kinase 6	6012	0.005	0.2501	No
58	SRD5A2	SRD5A2 Entrez, Source	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	6110	0.003	0.2430	No
59	MCAM	MCAM Entrez, Source	melanoma cell adhesion molecule	6217	0.001	0.2350	No
60	MRGPRF	MRGPRF Entrez, Source	MAS-related GPR, member F	6355	-0.001	0.2247	No
61	ACVR1	ACVR1 Entrez, Source	activin A receptor, type I	6711	-0.007	0.1984	No
62	PDLIM4	PDLIM4 Entrez, Source	PDZ and LIM domain 4	6797	-0.009	0.1925	No
63	DLL1	DLL1 Entrez, Source	delta-like 1 (Drosophila)	7008	-0.012	0.1774	No
64	CNN1	CNN1 Entrez, Source	calponin 1, basic, smooth muscle	7011	-0.012	0.1781	No
65	TOP1	TOP1 Entrez, Source	topoisomerase (DNA) I	7017	-0.013	0.1785	No
66	JPH2	JPH2 Entrez, Source	junctophilin 2	7046	-0.013	0.1772	No
67	USP52	USP52 Entrez, Source	ubiquitin specific peptidase 52	7291	-0.018	0.1599	No
68	ITGA7	ITGA7 Entrez, Source	integrin, alpha 7	7298	-0.018	0.1605	No
69	LCP1	LCP1 Entrez, Source	lymphocyte cytosolic protein 1 (L-plastin)	7308	-0.018	0.1610	No
70	FOXE3	FOXE3 Entrez, Source	forkhead box E3	7406	-0.020	0.1549	No
71	CAP1	CAP1 Entrez, Source	CAP, adenylate cyclase-associated protein 1 (yeast)	7565	-0.023	0.1444	No
72	KCNMB1	KCNMB1 Entrez, Source	potassium large conductance calcium-activated channel, subfamily M, beta member 1	7758	-0.027	0.1316	No
73	TCF2	TCF2 Entrez, Source	transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor	7953	-0.030	0.1189	No
74	YWHAZ	YWHAZ Entrez, Source	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	8135	-0.034	0.1074	No
75	MAP1A	MAP1A Entrez, Source	microtubule-associated protein 1A	8202	-0.035	0.1046	No
76	MYH11	MYH11 Entrez, Source	myosin, heavy chain 11, smooth muscle	8278	-0.037	0.1013	No
77	DUSP5	DUSP5 Entrez, Source	dual specificity phosphatase 5	8551	-0.042	0.0834	No
78	TITF1	TITF1 Entrez, Source	thyroid transcription factor 1	8658	-0.045	0.0782	No
79	GGN	GGN Entrez, Source	gametogenetin	8728	-0.046	0.0759	No
80	RASD2	RASD2 Entrez, Source	RASD family, member 2	9030	-0.052	0.0565	No
81	PRKAB2	PRKAB2 Entrez, Source	protein kinase, AMP-activated, beta 2 non-catalytic subunit	9678	-0.067	0.0119	No
82	DMD	DMD Entrez, Source	dystrophin (muscular dystrophy, Duchenne and Becker types)	9896	-0.074	0.0001	No
83	CRK	CRK Entrez, Source	v-crk sarcoma virus CT10 oncogene homolog (avian)	9974	-0.076	-0.0009	No
84	PHF12	PHF12 Entrez, Source	PHD finger protein 12	9978	-0.076	0.0037	No
85	DUSP2	DUSP2 Entrez, Source	dual specificity phosphatase 2	9991	-0.076	0.0076	No
86	MATR3	MATR3 Entrez, Source	matrin 3	10114	-0.079	0.0034	No
87	PFN1	PFN1 Entrez, Source	profilin 1	10135	-0.080	0.0070	No
88	RBBP7	RBBP7 Entrez, Source	retinoblastoma binding protein 7	10181	-0.081	0.0087	No
89	SLC7A1	SLC7A1 Entrez, Source	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	10239	-0.083	0.0096	No
90	TPM3	TPM3 Entrez, Source	tropomyosin 3	10270	-0.084	0.0126	No
91	PPP1R12A	PPP1R12A Entrez, Source	protein phosphatase 1, regulatory (inhibitor) subunit 12A	10350	-0.086	0.0121	No
92	ACTR3	ACTR3 Entrez, Source	ARP3 actin-related protein 3 homolog (yeast)	10680	-0.096	-0.0067	No
93	SIPA1	SIPA1 Entrez, Source	signal-induced proliferation-associated gene 1	11004	-0.108	-0.0242	No
94	FHL2	FHL2 Entrez, Source	four and a half LIM domains 2	11359	-0.123	-0.0432	No
95	CFL1	CFL1 Entrez, Source	cofilin 1 (non-muscle)	11382	-0.124	-0.0370	No
96	CKM	CKM Entrez, Source	creatine kinase, muscle	11394	-0.125	-0.0300	No
97	ROCK2	ROCK2 Entrez, Source	Rho-associated, coiled-coil containing protein kinase 2	11450	-0.127	-0.0261	No
98	DIXDC1	DIXDC1 Entrez, Source	DIX domain containing 1	11483	-0.128	-0.0204	No
99	MUS81	MUS81 Entrez, Source	MUS81 endonuclease homolog (S. cerevisiae)	11677	-0.137	-0.0263	No
100	PDLIM7	PDLIM7 Entrez, Source	PDZ and LIM domain 7 (enigma)	11900	-0.150	-0.0336	No
101	HOXA5	HOXA5 Entrez, Source	homeobox A5	11961	-0.154	-0.0284	No
102	ASB2	ASB2 Entrez, Source	ankyrin repeat and SOCS box-containing 2	12011	-0.158	-0.0221	No
103	PNKP	PNKP Entrez, Source	polynucleotide kinase 3'-phosphatase	12212	-0.172	-0.0263	No
104	SYNCRIP	SYNCRIP Entrez, Source	synaptotagmin binding, cytoplasmic RNA interacting protein	12783	-0.238	-0.0543	No
105	FOSL1	FOSL1 Entrez, Source	FOS-like antigen 1	12920	-0.270	-0.0474	No
106	STAT5B	STAT5B Entrez, Source	signal transducer and activator of transcription 5B	13076	-0.317	-0.0391	No
107	CA3	CA3 Entrez, Source	carbonic anhydrase III, muscle specific	13129	-0.343	-0.0213	No
108	GADD45G	GADD45G Entrez, Source	growth arrest and DNA-damage-inducible, gamma	13297	-0.589	0.0034	No