Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_24h_repos
Upregulated in class	double_gel_8d
GeneSet	V$SRF_Q4
Enrichment Score (ES)	0.50283283
Normalized Enrichment Score (NES)	1.840065
Nominal p-value	0.0
FDR q-value	0.020197023
FWER p-Value	0.815

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	FOS	FOS Entrez, Source	v-fos FBJ murine osteosarcoma viral oncogene homolog	3	1.622	0.1035	Yes
2	SLC25A4	SLC25A4 Entrez, Source	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4	13	1.195	0.1793	Yes
3	CTGF	CTGF Entrez, Source	connective tissue growth factor	37	0.888	0.2343	Yes
4	TAGLN	TAGLN Entrez, Source	transgelin	40	0.874	0.2900	Yes
5	ACTA1	ACTA1 Entrez, Source	actin, alpha 1, skeletal muscle	60	0.762	0.3373	Yes
6	SGK	SGK Entrez, Source	serum/glucocorticoid regulated kinase	191	0.498	0.3593	Yes
7	SERPINH1	SERPINH1 Entrez, Source	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	233	0.457	0.3854	Yes
8	EGR2	EGR2 Entrez, Source	early growth response 2 (Krox-20 homolog, Drosophila)	312	0.390	0.4045	Yes
9	RAB30	RAB30 Entrez, Source	RAB30, member RAS oncogene family	363	0.357	0.4235	Yes
10	PPP2R3A	PPP2R3A Entrez, Source	protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha	603	0.257	0.4219	Yes
11	EDN1	EDN1 Entrez, Source	endothelin 1	648	0.245	0.4342	Yes
12	FST	FST Entrez, Source	follistatin	678	0.240	0.4474	Yes
13	CITED2	CITED2 Entrez, Source	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	793	0.215	0.4525	Yes
14	CX3CL1	CX3CL1 Entrez, Source	chemokine (C-X3-C motif) ligand 1	796	0.215	0.4661	Yes
15	FOXP1	FOXP1 Entrez, Source	forkhead box P1	833	0.207	0.4766	Yes
16	ACTG2	ACTG2 Entrez, Source	actin, gamma 2, smooth muscle, enteric	919	0.192	0.4825	Yes
17	SORT1	SORT1 Entrez, Source	sortilin 1	989	0.183	0.4890	Yes
18	PPAP2B	PPAP2B Entrez, Source	phosphatidic acid phosphatase type 2B	1157	0.164	0.4869	Yes
19	EGR1	EGR1 Entrez, Source	early growth response 1	1666	0.124	0.4565	Yes
20	RARB	RARB Entrez, Source	retinoic acid receptor, beta	1690	0.123	0.4626	Yes
21	ANXA6	ANXA6 Entrez, Source	annexin A6	1714	0.122	0.4687	Yes
22	SDPR	SDPR Entrez, Source	serum deprivation response (phosphatidylserine binding protein)	1754	0.119	0.4733	Yes
23	NR4A1	NR4A1 Entrez, Source	nuclear receptor subfamily 4, group A, member 1	1785	0.118	0.4786	Yes
24	MAPKAPK2	MAPKAPK2 Entrez, Source	mitogen-activated protein kinase-activated protein kinase 2	1883	0.113	0.4785	Yes
25	RIMS1	RIMS1 Entrez, Source	regulating synaptic membrane exocytosis 1	1929	0.110	0.4821	Yes
26	NR2F2	NR2F2 Entrez, Source	nuclear receptor subfamily 2, group F, member 2	2048	0.106	0.4800	Yes
27	KCNJ13	KCNJ13 Entrez, Source	potassium inwardly-rectifying channel, subfamily J, member 13	2073	0.105	0.4848	Yes
28	ASPA	ASPA Entrez, Source	aspartoacylase (Canavan disease)	2090	0.104	0.4903	Yes
29	MYO1E	MYO1E Entrez, Source	myosin IE	2117	0.103	0.4949	Yes
30	TMOD1	TMOD1 Entrez, Source	tropomodulin 1	2135	0.102	0.5001	Yes
31	CRH	CRH Entrez, Source	corticotropin releasing hormone	2185	0.100	0.5028	Yes
32	DUSP6	DUSP6 Entrez, Source	dual specificity phosphatase 6	2490	0.088	0.4855	No
33	IER2	IER2 Entrez, Source	immediate early response 2	2518	0.087	0.4890	No
34	TNMD	TNMD Entrez, Source	tenomodulin	2550	0.086	0.4921	No
35	JUNB	JUNB Entrez, Source	jun B proto-oncogene	2752	0.078	0.4820	No
36	TGFB1I1	TGFB1I1 Entrez, Source	transforming growth factor beta 1 induced transcript 1	2804	0.077	0.4830	No
37	MBNL1	MBNL1 Entrez, Source	muscleblind-like (Drosophila)	2930	0.073	0.4783	No
38	GPR20	GPR20 Entrez, Source	G protein-coupled receptor 20	3108	0.068	0.4692	No
39	MMP14	MMP14 Entrez, Source	matrix metallopeptidase 14 (membrane-inserted)	3176	0.066	0.4684	No
40	CDKN1B	CDKN1B Entrez, Source	cyclin-dependent kinase inhibitor 1B (p27, Kip1)	3202	0.066	0.4707	No
41	NPPA	NPPA Entrez, Source	natriuretic peptide precursor A	3402	0.060	0.4595	No
42	ACTN1	ACTN1 Entrez, Source	actinin, alpha 1	3460	0.059	0.4590	No
43	RERE	RERE Entrez, Source	arginine-glutamic acid dipeptide (RE) repeats	3537	0.056	0.4568	No
44	MAPK14	MAPK14 Entrez, Source	mitogen-activated protein kinase 14	3602	0.055	0.4555	No
45	EGR4	EGR4 Entrez, Source	early growth response 4	3630	0.054	0.4569	No
46	EGR3	EGR3 Entrez, Source	early growth response 3	3704	0.052	0.4547	No
47	POU3F4	POU3F4 Entrez, Source	POU domain, class 3, transcription factor 4	3843	0.049	0.4474	No
48	SLC4A3	SLC4A3 Entrez, Source	solute carrier family 4, anion exchanger, member 3	3892	0.048	0.4468	No
49	MYO1B	MYO1B Entrez, Source	myosin IB	4074	0.043	0.4359	No
50	TNNC1	TNNC1 Entrez, Source	troponin C type 1 (slow)	4157	0.041	0.4323	No
51	DSTN	DSTN Entrez, Source	destrin (actin depolymerizing factor)	4198	0.040	0.4318	No
52	GAB2	GAB2 Entrez, Source	GRB2-associated binding protein 2	4277	0.038	0.4283	No
53	RHOJ	RHOJ Entrez, Source	ras homolog gene family, member J	4296	0.038	0.4294	No
54	MAP2K6	MAP2K6 Entrez, Source	mitogen-activated protein kinase kinase 6	4510	0.034	0.4154	No
55	CSRP1	CSRP1 Entrez, Source	cysteine and glycine-rich protein 1	4522	0.033	0.4167	No
56	ATRX	ATRX Entrez, Source	alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae)	4548	0.033	0.4170	No
57	IL17B	IL17B Entrez, Source	interleukin 17B	4928	0.025	0.3899	No
58	CALD1	CALD1 Entrez, Source	caldesmon 1	5081	0.023	0.3799	No
59	DGKG	DGKG Entrez, Source	diacylglycerol kinase, gamma 90kDa	5313	0.019	0.3636	No
60	COL23A1	COL23A1 Entrez, Source	collagen, type XXIII, alpha 1	5329	0.018	0.3636	No
61	TGIF	TGIF Entrez, Source	TGFB-induced factor (TALE family homeobox)	5378	0.017	0.3611	No
62	FGFRL1	FGFRL1 Entrez, Source	fibroblast growth factor receptor-like 1	5385	0.017	0.3617	No
63	CACNA1B	CACNA1B Entrez, Source	calcium channel, voltage-dependent, L type, alpha 1B subunit	5446	0.016	0.3582	No
64	NLGN3	NLGN3 Entrez, Source	neuroligin 3	5467	0.016	0.3577	No
65	TLE3	TLE3 Entrez, Source	transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	5643	0.012	0.3452	No
66	PLCB3	PLCB3 Entrez, Source	phospholipase C, beta 3 (phosphatidylinositol-specific)	5675	0.011	0.3436	No
67	AKAP12	AKAP12 Entrez, Source	A kinase (PRKA) anchor protein (gravin) 12	5716	0.011	0.3413	No
68	ACTB	ACTB Entrez, Source	actin, beta	5788	0.009	0.3365	No
69	PADI2	PADI2 Entrez, Source	peptidyl arginine deiminase, type II	5804	0.009	0.3359	No
70	KCNK3	KCNK3 Entrez, Source	potassium channel, subfamily K, member 3	5898	0.007	0.3294	No
71	NR2F1	NR2F1 Entrez, Source	nuclear receptor subfamily 2, group F, member 1	5904	0.007	0.3294	No
72	GRK6	GRK6 Entrez, Source	G protein-coupled receptor kinase 6	6012	0.005	0.3217	No
73	SRD5A2	SRD5A2 Entrez, Source	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	6110	0.003	0.3145	No
74	TPM1	TPM1 Entrez, Source	tropomyosin 1 (alpha)	6293	-0.000	0.3008	No
75	MSX1	MSX1 Entrez, Source	msh homeobox homolog 1 (Drosophila)	6299	-0.000	0.3004	No
76	MRGPRF	MRGPRF Entrez, Source	MAS-related GPR, member F	6355	-0.001	0.2963	No
77	IHPK1	IHPK1 Entrez, Source	inositol hexaphosphate kinase 1	6458	-0.003	0.2888	No
78	PPARG	PPARG Entrez, Source	peroxisome proliferative activated receptor, gamma	6599	-0.006	0.2785	No
79	MCL1	MCL1 Entrez, Source	myeloid cell leukemia sequence 1 (BCL2-related)	6652	-0.006	0.2750	No
80	DLL1	DLL1 Entrez, Source	delta-like 1 (Drosophila)	7008	-0.012	0.2490	No
81	CNN1	CNN1 Entrez, Source	calponin 1, basic, smooth muscle	7011	-0.012	0.2496	No
82	JPH2	JPH2 Entrez, Source	junctophilin 2	7046	-0.013	0.2479	No
83	SND1	SND1 Entrez, Source	-	7145	-0.015	0.2414	No
84	FOXE3	FOXE3 Entrez, Source	forkhead box E3	7406	-0.020	0.2230	No
85	NPR3	NPR3 Entrez, Source	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	7707	-0.025	0.2020	No
86	KCNMB1	KCNMB1 Entrez, Source	potassium large conductance calcium-activated channel, subfamily M, beta member 1	7758	-0.027	0.1999	No
87	KCNA1	KCNA1 Entrez, Source	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	7818	-0.028	0.1972	No
88	ESRRA	ESRRA Entrez, Source	estrogen-related receptor alpha	8092	-0.033	0.1787	No
89	MAP1A	MAP1A Entrez, Source	microtubule-associated protein 1A	8202	-0.035	0.1727	No
90	MYH11	MYH11 Entrez, Source	myosin, heavy chain 11, smooth muscle	8278	-0.037	0.1694	No
91	DUSP5	DUSP5 Entrez, Source	dual specificity phosphatase 5	8551	-0.042	0.1516	No
92	RASD2	RASD2 Entrez, Source	RASD family, member 2	9030	-0.052	0.1188	No
93	H2AFX	H2AFX Entrez, Source	H2A histone family, member X	9093	-0.054	0.1175	No
94	TAF5L	TAF5L Entrez, Source	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa	9453	-0.062	0.0943	No
95	DMD	DMD Entrez, Source	dystrophin (muscular dystrophy, Duchenne and Becker types)	9896	-0.074	0.0656	No
96	FGF8	FGF8 Entrez, Source	fibroblast growth factor 8 (androgen-induced)	9919	-0.074	0.0687	No
97	PHF12	PHF12 Entrez, Source	PHD finger protein 12	9978	-0.076	0.0692	No
98	DUSP2	DUSP2 Entrez, Source	dual specificity phosphatase 2	9991	-0.076	0.0731	No
99	PFN1	PFN1 Entrez, Source	profilin 1	10135	-0.080	0.0674	No
100	RBBP7	RBBP7 Entrez, Source	retinoblastoma binding protein 7	10181	-0.081	0.0692	No
101	TPM3	TPM3 Entrez, Source	tropomyosin 3	10270	-0.084	0.0679	No
102	PPP1R12A	PPP1R12A Entrez, Source	protein phosphatase 1, regulatory (inhibitor) subunit 12A	10350	-0.086	0.0674	No
103	MID1	MID1 Entrez, Source	midline 1 (Opitz/BBB syndrome)	10356	-0.086	0.0726	No
104	VGF	VGF Entrez, Source	VGF nerve growth factor inducible	10474	-0.089	0.0694	No
105	NCOA6	NCOA6 Entrez, Source	nuclear receptor coactivator 6	10541	-0.091	0.0703	No
106	FGF17	FGF17 Entrez, Source	fibroblast growth factor 17	10631	-0.095	0.0696	No
107	DDX17	DDX17 Entrez, Source	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	11050	-0.110	0.0450	No
108	CFL1	CFL1 Entrez, Source	cofilin 1 (non-muscle)	11382	-0.124	0.0279	No
109	CKM	CKM Entrez, Source	creatine kinase, muscle	11394	-0.125	0.0351	No
110	SRP54	SRP54 Entrez, Source	signal recognition particle 54kDa	11413	-0.125	0.0417	No
111	ROCK2	ROCK2 Entrez, Source	Rho-associated, coiled-coil containing protein kinase 2	11450	-0.127	0.0471	No
112	DIXDC1	DIXDC1 Entrez, Source	DIX domain containing 1	11483	-0.128	0.0529	No
113	MUS81	MUS81 Entrez, Source	MUS81 endonuclease homolog (S. cerevisiae)	11677	-0.137	0.0471	No
114	HOXA5	HOXA5 Entrez, Source	homeobox A5	11961	-0.154	0.0355	No
115	CSDA	CSDA Entrez, Source	cold shock domain protein A	12139	-0.167	0.0328	No
116	STAT5B	STAT5B Entrez, Source	signal transducer and activator of transcription 5B	13076	-0.317	-0.0176	No
117	GADD45G	GADD45G Entrez, Source	growth arrest and DNA-damage-inducible, gamma	13297	-0.589	0.0034	No