Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_24h.class.cls #double_gel_8d_versus_double_gel_24h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_24h_repos |
Upregulated in class | double_gel_8d |
GeneSet | V$TBP_01 |
Enrichment Score (ES) | 0.49427524 |
Normalized Enrichment Score (NES) | 1.7839531 |
Nominal p-value | 0.0 |
FDR q-value | 0.031486373 |
FWER p-Value | 0.97 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | FOS | FOS Entrez,  Source | v-fos FBJ murine osteosarcoma viral oncogene homolog | 3 | 1.622 | 0.1090 | Yes |
2 | COL1A2 | COL1A2 Entrez,  Source | collagen, type I, alpha 2 | 12 | 1.254 | 0.1929 | Yes |
3 | SLC25A4 | SLC25A4 Entrez,  Source | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 | 13 | 1.195 | 0.2734 | Yes |
4 | ACTA1 | ACTA1 Entrez,  Source | actin, alpha 1, skeletal muscle | 60 | 0.762 | 0.3212 | Yes |
5 | TRPM4 | TRPM4 Entrez,  Source | transient receptor potential cation channel, subfamily M, member 4 | 74 | 0.710 | 0.3680 | Yes |
6 | P2RX5 | P2RX5 Entrez,  Source | purinergic receptor P2X, ligand-gated ion channel, 5 | 175 | 0.523 | 0.3957 | Yes |
7 | SCHIP1 | SCHIP1 Entrez,  Source | schwannomin interacting protein 1 | 217 | 0.472 | 0.4244 | Yes |
8 | EGR2 | EGR2 Entrez,  Source | early growth response 2 (Krox-20 homolog, Drosophila) | 312 | 0.390 | 0.4435 | Yes |
9 | SLC3A1 | SLC3A1 Entrez,  Source | 1 | 373 | 0.349 | 0.4625 | Yes |
10 | FLI1 | FLI1 Entrez,  Source | Friend leukemia virus integration 1 | 724 | 0.231 | 0.4516 | Yes |
11 | CKB | CKB Entrez,  Source | creatine kinase, brain | 733 | 0.229 | 0.4664 | Yes |
12 | GABRB2 | GABRB2 Entrez,  Source | gamma-aminobutyric acid (GABA) A receptor, beta 2 | 982 | 0.185 | 0.4601 | Yes |
13 | PRKAA2 | PRKAA2 Entrez,  Source | protein kinase, AMP-activated, alpha 2 catalytic subunit | 1005 | 0.182 | 0.4707 | Yes |
14 | GPSN2 | GPSN2 Entrez,  Source | glycoprotein, synaptic 2 | 1058 | 0.175 | 0.4786 | Yes |
15 | PPARGC1A | PPARGC1A Entrez,  Source | peroxisome proliferative activated receptor, gamma, coactivator 1, alpha | 1066 | 0.174 | 0.4898 | Yes |
16 | S100A4 | S100A4 Entrez,  Source | S100 calcium binding protein A4 | 1285 | 0.152 | 0.4836 | Yes |
17 | SH3GLB2 | SH3GLB2 Entrez,  Source | SH3-domain GRB2-like endophilin B2 | 1347 | 0.147 | 0.4889 | Yes |
18 | TEF | TEF Entrez,  Source | thyrotrophic embryonic factor | 1404 | 0.143 | 0.4943 | Yes |
19 | FXYD1 | FXYD1 Entrez,  Source | FXYD domain containing ion transport regulator 1 (phospholemman) | 1721 | 0.122 | 0.4786 | No |
20 | TRDN | TRDN Entrez,  Source | triadin | 1767 | 0.118 | 0.4832 | No |
21 | NR4A1 | NR4A1 Entrez,  Source | nuclear receptor subfamily 4, group A, member 1 | 1785 | 0.118 | 0.4898 | No |
22 | HDAC7A | HDAC7A Entrez,  Source | histone deacetylase 7A | 2133 | 0.102 | 0.4705 | No |
23 | NR0B2 | NR0B2 Entrez,  Source | nuclear receptor subfamily 0, group B, member 2 | 2330 | 0.094 | 0.4620 | No |
24 | HSPB3 | HSPB3 Entrez,  Source | heat shock 27kDa protein 3 | 2369 | 0.093 | 0.4654 | No |
25 | PRKAG1 | PRKAG1 Entrez,  Source | protein kinase, AMP-activated, gamma 1 non-catalytic subunit | 2402 | 0.092 | 0.4691 | No |
26 | HRC | HRC Entrez,  Source | histidine rich calcium binding protein | 2404 | 0.092 | 0.4752 | No |
27 | EHD1 | EHD1 Entrez,  Source | EH-domain containing 1 | 2429 | 0.090 | 0.4795 | No |
28 | BRAF | BRAF Entrez,  Source | v-raf murine sarcoma viral oncogene homolog B1 | 2605 | 0.083 | 0.4719 | No |
29 | SEMA4B | SEMA4B Entrez,  Source | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B | 2615 | 0.083 | 0.4768 | No |
30 | GRIK4 | GRIK4 Entrez,  Source | glutamate receptor, ionotropic, kainate 4 | 3254 | 0.064 | 0.4329 | No |
31 | DES | DES Entrez,  Source | desmin | 3260 | 0.064 | 0.4368 | No |
32 | GALNT1 | GALNT1 Entrez,  Source | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) | 3331 | 0.062 | 0.4357 | No |
33 | GIT1 | GIT1 Entrez,  Source | G protein-coupled receptor kinase interactor 1 | 3423 | 0.060 | 0.4329 | No |
34 | CRISP1 | CRISP1 Entrez,  Source | cysteine-rich secretory protein 1 | 3706 | 0.052 | 0.4151 | No |
35 | DNM2 | DNM2 Entrez,  Source | dynamin 2 | 3743 | 0.051 | 0.4158 | No |
36 | MAP2K5 | MAP2K5 Entrez,  Source | mitogen-activated protein kinase kinase 5 | 3762 | 0.051 | 0.4179 | No |
37 | ASB16 | ASB16 Entrez,  Source | ankyrin repeat and SOCS box-containing 16 | 3821 | 0.050 | 0.4168 | No |
38 | LHX5 | LHX5 Entrez,  Source | LIM homeobox 5 | 3894 | 0.047 | 0.4146 | No |
39 | FGF21 | FGF21 Entrez,  Source | fibroblast growth factor 21 | 3941 | 0.046 | 0.4142 | No |
40 | CDH20 | CDH20 Entrez,  Source | cadherin 20, type 2 | 3986 | 0.045 | 0.4139 | No |
41 | SSH3 | SSH3 Entrez,  Source | slingshot homolog 3 (Drosophila) | 4110 | 0.042 | 0.4074 | No |
42 | PTF1A | PTF1A Entrez,  Source | pancreas specific transcription factor, 1a | 4139 | 0.041 | 0.4081 | No |
43 | EPHA7 | EPHA7 Entrez,  Source | EPH receptor A7 | 4156 | 0.041 | 0.4097 | No |
44 | ESRRG | ESRRG Entrez,  Source | estrogen-related receptor gamma | 4402 | 0.036 | 0.3936 | No |
45 | POFUT1 | POFUT1 Entrez,  Source | protein O-fucosyltransferase 1 | 4480 | 0.034 | 0.3901 | No |
46 | TAX1BP3 | TAX1BP3 Entrez,  Source | Tax1 (human T-cell leukemia virus type I) binding protein 3 | 4614 | 0.032 | 0.3821 | No |
47 | THBS2 | THBS2 Entrez,  Source | thrombospondin 2 | 4738 | 0.029 | 0.3748 | No |
48 | CYP26B1 | CYP26B1 Entrez,  Source | cytochrome P450, family 26, subfamily B, polypeptide 1 | 4829 | 0.027 | 0.3699 | No |
49 | TSC1 | TSC1 Entrez,  Source | tuberous sclerosis 1 | 4992 | 0.024 | 0.3593 | No |
50 | MYH8 | MYH8 Entrez,  Source | myosin, heavy chain 8, skeletal muscle, perinatal | 5127 | 0.022 | 0.3506 | No |
51 | LGI1 | LGI1 Entrez,  Source | leucine-rich, glioma inactivated 1 | 5164 | 0.021 | 0.3493 | No |
52 | SULT2A1 | SULT2A1 Entrez,  Source | sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 | 5184 | 0.021 | 0.3492 | No |
53 | SLC2A4 | SLC2A4 Entrez,  Source | solute carrier family 2 (facilitated glucose transporter), member 4 | 5283 | 0.019 | 0.3431 | No |
54 | ABCC6 | ABCC6 Entrez,  Source | ATP-binding cassette, sub-family C (CFTR/MRP), member 6 | 5396 | 0.017 | 0.3358 | No |
55 | GPR153 | GPR153 Entrez,  Source | G protein-coupled receptor 153 | 5620 | 0.012 | 0.3198 | No |
56 | ART5 | ART5 Entrez,  Source | ADP-ribosyltransferase 5 | 5769 | 0.010 | 0.3093 | No |
57 | ART3 | ART3 Entrez,  Source | ADP-ribosyltransferase 3 | 5867 | 0.008 | 0.3024 | No |
58 | HIST1H2BA | HIST1H2BA Entrez,  Source | histone cluster 1, H2ba | 6005 | 0.005 | 0.2924 | No |
59 | HIST1H2AA | HIST1H2AA Entrez,  Source | histone cluster 1, H2aa | 6291 | -0.000 | 0.2709 | No |
60 | POU4F1 | POU4F1 Entrez,  Source | POU domain, class 4, transcription factor 1 | 6349 | -0.001 | 0.2667 | No |
61 | NOG | NOG Entrez,  Source | noggin | 6567 | -0.005 | 0.2506 | No |
62 | HAND2 | HAND2 Entrez,  Source | heart and neural crest derivatives expressed 2 | 6680 | -0.007 | 0.2426 | No |
63 | PAX3 | PAX3 Entrez,  Source | paired box gene 3 (Waardenburg syndrome 1) | 6824 | -0.009 | 0.2324 | No |
64 | SLC35C2 | SLC35C2 Entrez,  Source | solute carrier family 35, member C2 | 6882 | -0.010 | 0.2288 | No |
65 | PNMA1 | PNMA1 Entrez,  Source | paraneoplastic antigen MA1 | 6990 | -0.012 | 0.2215 | No |
66 | DNAJA4 | DNAJA4 Entrez,  Source | DnaJ (Hsp40) homolog, subfamily A, member 4 | 7050 | -0.013 | 0.2180 | No |
67 | MYOCD | MYOCD Entrez,  Source | myocardin | 7203 | -0.016 | 0.2076 | No |
68 | CHRDL1 | CHRDL1 Entrez,  Source | chordin-like 1 | 7218 | -0.016 | 0.2076 | No |
69 | AQP1 | AQP1 Entrez,  Source | aquaporin 1 (Colton blood group) | 7239 | -0.017 | 0.2072 | No |
70 | ITGA7 | ITGA7 Entrez,  Source | integrin, alpha 7 | 7298 | -0.018 | 0.2040 | No |
71 | ZFP36L1 | ZFP36L1 Entrez,  Source | zinc finger protein 36, C3H type-like 1 | 7346 | -0.019 | 0.2017 | No |
72 | NR0B1 | NR0B1 Entrez,  Source | nuclear receptor subfamily 0, group B, member 1 | 7399 | -0.020 | 0.1991 | No |
73 | AMPD1 | AMPD1 Entrez,  Source | adenosine monophosphate deaminase 1 (isoform M) | 8004 | -0.031 | 0.1556 | No |
74 | MEOX2 | MEOX2 Entrez,  Source | mesenchyme homeobox 2 | 8026 | -0.032 | 0.1562 | No |
75 | PLEC1 | PLEC1 Entrez,  Source | plectin 1, intermediate filament binding protein 500kDa | 8108 | -0.034 | 0.1523 | No |
76 | KPNA3 | KPNA3 Entrez,  Source | karyopherin alpha 3 (importin alpha 4) | 8218 | -0.036 | 0.1465 | No |
77 | GCG | GCG Entrez,  Source | glucagon | 8225 | -0.036 | 0.1484 | No |
78 | CLCN1 | CLCN1 Entrez,  Source | chloride channel 1, skeletal muscle (Thomsen disease, autosomal dominant) | 8253 | -0.036 | 0.1489 | No |
79 | CTCF | CTCF Entrez,  Source | CCCTC-binding factor (zinc finger protein) | 8374 | -0.039 | 0.1424 | No |
80 | RARA | RARA Entrez,  Source | retinoic acid receptor, alpha | 8595 | -0.043 | 0.1287 | No |
81 | TCF1 | TCF1 Entrez,  Source | transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor | 8858 | -0.049 | 0.1122 | No |
82 | IFNB1 | IFNB1 Entrez,  Source | interferon, beta 1, fibroblast | 8907 | -0.050 | 0.1120 | No |
83 | HAPLN1 | HAPLN1 Entrez,  Source | hyaluronan and proteoglycan link protein 1 | 8916 | -0.050 | 0.1147 | No |
84 | PPP2R2A | PPP2R2A Entrez,  Source | protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform | 8961 | -0.051 | 0.1148 | No |
85 | FGF5 | FGF5 Entrez,  Source | fibroblast growth factor 5 | 9095 | -0.054 | 0.1084 | No |
86 | IGF1 | IGF1 Entrez,  Source | insulin-like growth factor 1 (somatomedin C) | 9134 | -0.055 | 0.1092 | No |
87 | GRIN2B | GRIN2B Entrez,  Source | glutamate receptor, ionotropic, N-methyl D-aspartate 2B | 9200 | -0.056 | 0.1081 | No |
88 | NCOR1 | NCOR1 Entrez,  Source | nuclear receptor co-repressor 1 | 9668 | -0.067 | 0.0773 | No |
89 | TTC17 | TTC17 Entrez,  Source | tetratricopeptide repeat domain 17 | 9894 | -0.074 | 0.0653 | No |
90 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 9896 | -0.074 | 0.0701 | No |
91 | NDRG2 | NDRG2 Entrez,  Source | NDRG family member 2 | 9944 | -0.075 | 0.0716 | No |
92 | MGAT3 | MGAT3 Entrez,  Source | mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase | 10191 | -0.081 | 0.0585 | No |
93 | MYST2 | MYST2 Entrez,  Source | MYST histone acetyltransferase 2 | 10762 | -0.099 | 0.0222 | No |
94 | COL10A1 | COL10A1 Entrez,  Source | collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia) | 10885 | -0.104 | 0.0200 | No |
95 | PACSIN3 | PACSIN3 Entrez,  Source | protein kinase C and casein kinase substrate in neurons 3 | 10908 | -0.105 | 0.0254 | No |
96 | SOX9 | SOX9 Entrez,  Source | SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal) | 11038 | -0.109 | 0.0230 | No |
97 | RPS19 | RPS19 Entrez,  Source | ribosomal protein S19 | 11310 | -0.121 | 0.0107 | No |
98 | FHL2 | FHL2 Entrez,  Source | four and a half LIM domains 2 | 11359 | -0.123 | 0.0153 | No |
99 | LUC7L | LUC7L Entrez,  Source | LUC7-like (S. cerevisiae) | 11577 | -0.132 | 0.0079 | No |
100 | CSNK1E | CSNK1E Entrez,  Source | casein kinase 1, epsilon | 11711 | -0.139 | 0.0072 | No |
101 | NTF3 | NTF3 Entrez,  Source | neurotrophin 3 | 11818 | -0.146 | 0.0090 | No |
102 | TUBA4 | TUBA4 Entrez,  Source | tubulin, alpha 4 | 12345 | -0.183 | -0.0184 | No |
103 | ITGB3BP | ITGB3BP Entrez,  Source | integrin beta 3 binding protein (beta3-endonexin) | 12793 | -0.240 | -0.0361 | No |
104 | SLC30A1 | SLC30A1 Entrez,  Source | solute carrier family 30 (zinc transporter), member 1 | 12795 | -0.240 | -0.0199 | No |
105 | AGT | AGT Entrez,  Source | angiotensinogen (serpin peptidase inhibitor, clade A, member 8) | 13048 | -0.306 | -0.0184 | No |
106 | MAT2A | MAT2A Entrez,  Source | methionine adenosyltransferase II, alpha | 13299 | -0.601 | 0.0032 | No |