Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_24h.class.cls
#double_gel_8d_versus_double_gel_24h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_24h_repos
Upregulated in classdouble_gel_8d
GeneSetYATGNWAAT_V$OCT_C
Enrichment Score (ES)0.455344
Normalized Enrichment Score (NES)1.712001
Nominal p-value0.0
FDR q-value0.051638614
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: YATGNWAAT_V$OCT_C   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MAFMAF
Entrez,  Source
v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)310.9350.0560Yes
2PFKFB1PFKFB1
Entrez,  Source
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1470.8290.1065Yes
3LPLLPL
Entrez,  Source
lipoprotein lipase1070.6460.1424Yes
4SLC24A3SLC24A3
Entrez,  Source
solute carrier family 24 (sodium/potassium/calcium exchanger), member 31510.5630.1743Yes
5ALDH1A1ALDH1A1
Entrez,  Source
aldehyde dehydrogenase 1 family, member A11850.5100.2036Yes
6EGR2EGR2
Entrez,  Source
early growth response 2 (Krox-20 homolog, Drosophila)3120.3900.2183Yes
7CCND1CCND1
Entrez,  Source
cyclin D13910.3410.2337Yes
8GPC4GPC4
Entrez,  Source
glypican 45770.2620.2360Yes
9NFIANFIA
Entrez,  Source
nuclear factor I/A5810.2620.2521Yes
10PPP2R3APPP2R3A
Entrez,  Source
protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha6030.2570.2665Yes
11LPHN1LPHN1
Entrez,  Source
latrophilin 16670.2420.2769Yes
12SLC10A2SLC10A2
Entrez,  Source
solute carrier family 10 (sodium/bile acid cotransporter family), member 26710.2420.2917Yes
13RAB3CRAB3C
Entrez,  Source
RAB3C, member RAS oncogene family7390.2290.3009Yes
14CUTL1CUTL1
Entrez,  Source
cut-like 1, CCAAT displacement protein (Drosophila)8070.2120.3091Yes
15LMO4LMO4
Entrez,  Source
LIM domain only 48240.2090.3209Yes
16NGFRAP1NGFRAP1
Entrez,  Source
nerve growth factor receptor (TNFRSF16) associated protein 18300.2080.3335Yes
17FOXP1FOXP1
Entrez,  Source
forkhead box P18330.2070.3462Yes
18MAP1BMAP1B
Entrez,  Source
microtubule-associated protein 1B8540.2030.3574Yes
19MRASMRAS
Entrez,  Source
muscle RAS oncogene homolog8630.2010.3694Yes
20ADORA1ADORA1
Entrez,  Source
adenosine A1 receptor9010.1950.3787Yes
21ACTG2ACTG2
Entrez,  Source
actin, gamma 2, smooth muscle, enteric9190.1920.3895Yes
22IGSF4IGSF4
Entrez,  Source
immunoglobulin superfamily, member 49320.1900.4004Yes
23PITX2PITX2
Entrez,  Source
paired-like homeodomain transcription factor 210470.1770.4028Yes
24CYR61CYR61
Entrez,  Source
cysteine-rich, angiogenic inducer, 6110620.1750.4126Yes
25DPYSL3DPYSL3
Entrez,  Source
dihydropyrimidinase-like 311630.1640.4153Yes
26FGF12FGF12
Entrez,  Source
fibroblast growth factor 1213340.1480.4117Yes
27POLMPOLM
Entrez,  Source
polymerase (DNA directed), mu13410.1480.4204Yes
28ZFHX1BZFHX1B
Entrez,  Source
zinc finger homeobox 1b14270.1400.4227Yes
29SCRN1SCRN1
Entrez,  Source
secernin 115070.1340.4251Yes
30NUDT3NUDT3
Entrez,  Source
nudix (nucleoside diphosphate linked moiety X)-type motif 315870.1290.4272Yes
31FKRPFKRP
Entrez,  Source
fukutin related protein16350.1260.4315Yes
32RARBRARB
Entrez,  Source
retinoic acid receptor, beta16900.1230.4351Yes
33TRDNTRDN
Entrez,  Source
triadin17670.1180.4367Yes
34NUDT6NUDT6
Entrez,  Source
nudix (nucleoside diphosphate linked moiety X)-type motif 619210.1110.4320Yes
35CACNG2CACNG2
Entrez,  Source
calcium channel, voltage-dependent, gamma subunit 219300.1100.4383Yes
36RNASE4RNASE4
Entrez,  Source
ribonuclease, RNase A family, 420640.1050.4347Yes
37RHOBRHOB
Entrez,  Source
ras homolog gene family, member B20720.1050.4408Yes
38TAS2R7TAS2R7
Entrez,  Source
taste receptor, type 2, member 720820.1040.4466Yes
39TBXAS1TBXAS1
Entrez,  Source
thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)20890.1040.4526Yes
40POU1F1POU1F1
Entrez,  Source
POU domain, class 1, transcription factor 1 (Pit1, growth hormone factor 1)21380.1020.4553Yes
41CSF3CSF3
Entrez,  Source
colony stimulating factor 3 (granulocyte)23060.0950.4486No
42SFRP1SFRP1
Entrez,  Source
secreted frizzled-related protein 123270.0940.4530No
43EGLN2EGLN2
Entrez,  Source
egl nine homolog 2 (C. elegans)24440.0900.4498No
44FZD4FZD4
Entrez,  Source
frizzled homolog 4 (Drosophila)25280.0870.4489No
45ITPR3ITPR3
Entrez,  Source
inositol 1,4,5-triphosphate receptor, type 325610.0850.4518No
46ING1ING1
Entrez,  Source
inhibitor of growth family, member 125870.0840.4551No
47OTX2OTX2
Entrez,  Source
orthodenticle homolog 2 (Drosophila)28310.0760.4414No
48GNB3GNB3
Entrez,  Source
guanine nucleotide binding protein (G protein), beta polypeptide 328460.0760.4451No
49LMO3LMO3
Entrez,  Source
LIM domain only 3 (rhombotin-like 2)30370.0700.4351No
50ERGERG
Entrez,  Source
v-ets erythroblastosis virus E26 oncogene homolog (avian)30400.0700.4393No
51SYT1SYT1
Entrez,  Source
synaptotagmin I30450.0700.4434No
52GRIN3AGRIN3A
Entrez,  Source
glutamate receptor, ionotropic, N-methyl-D-aspartate 3A32160.0650.4345No
53SFRP2SFRP2
Entrez,  Source
secreted frizzled-related protein 232470.0640.4363No
54ATP1B2ATP1B2
Entrez,  Source
ATPase, Na+/K+ transporting, beta 2 polypeptide33980.0600.4287No
55POU2F3POU2F3
Entrez,  Source
POU domain, class 2, transcription factor 335080.0570.4240No
56FGF20FGF20
Entrez,  Source
fibroblast growth factor 2035300.0570.4259No
57CRISP1CRISP1
Entrez,  Source
cysteine-rich secretory protein 137060.0520.4159No
58ALDH1A2ALDH1A2
Entrez,  Source
aldehyde dehydrogenase 1 family, member A237100.0520.4189No
59POU3F4POU3F4
Entrez,  Source
POU domain, class 3, transcription factor 438430.0490.4119No
60KCNIP4KCNIP4
Entrez,  Source
Kv channel interacting protein 439620.0450.4058No
61PHC2PHC2
Entrez,  Source
polyhomeotic homolog 2 (Drosophila)39720.0450.4080No
62SH3GL3SH3GL3
Entrez,  Source
SH3-domain GRB2-like 340150.0440.4075No
63HPCAL4HPCAL4
Entrez,  Source
hippocalcin like 442430.0390.3927No
64GBX2GBX2
Entrez,  Source
gastrulation brain homeobox 244530.0350.3791No
65FZD2FZD2
Entrez,  Source
frizzled homolog 2 (Drosophila)45300.0330.3754No
66SLC6A15SLC6A15
Entrez,  Source
solute carrier family 6, member 1547390.0290.3615No
67NR4A3NR4A3
Entrez,  Source
nuclear receptor subfamily 4, group A, member 347530.0290.3623No
68ARHGAP4ARHGAP4
Entrez,  Source
Rho GTPase activating protein 447930.0280.3611No
69RAB26RAB26
Entrez,  Source
RAB26, member RAS oncogene family48230.0280.3606No
70PLCB2PLCB2
Entrez,  Source
phospholipase C, beta 248670.0270.3590No
71TECTEC
Entrez,  Source
tec protein tyrosine kinase49330.0250.3556No
72THRATHRA
Entrez,  Source
thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)49840.0240.3534No
73TSC1TSC1
Entrez,  Source
tuberous sclerosis 149920.0240.3544No
74ACBD4ACBD4
Entrez,  Source
acyl-Coenzyme A binding domain containing 451900.0200.3407No
75DLX1DLX1
Entrez,  Source
distal-less homeobox 152430.0200.3380No
76NOS1NOS1
Entrez,  Source
nitric oxide synthase 1 (neuronal)52820.0190.3363No
77JUNDJUND
Entrez,  Source
jun D proto-oncogene52890.0190.3370No
78DGKGDGKG
Entrez,  Source
diacylglycerol kinase, gamma 90kDa53130.0190.3364No
79COL23A1COL23A1
Entrez,  Source
collagen, type XXIII, alpha 153290.0180.3364No
80GPR4GPR4
Entrez,  Source
G protein-coupled receptor 454120.0160.3312No
81NEUROG1NEUROG1
Entrez,  Source
neurogenin 154880.0150.3265No
82ISL1ISL1
Entrez,  Source
ISL1 transcription factor, LIM/homeodomain, (islet-1)55120.0140.3256No
83TMEM24TMEM24
Entrez,  Source
transmembrane protein 2455910.0130.3205No
84NRXN3NRXN3
Entrez,  Source
neurexin 357700.0100.3076No
85CNOT2CNOT2
Entrez,  Source
CCR4-NOT transcription complex, subunit 257860.0090.3071No
86CELSR2CELSR2
Entrez,  Source
cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)58490.0080.3029No
87CD79BCD79B
Entrez,  Source
CD79b molecule, immunoglobulin-associated beta58710.0080.3018No
88YWHABYWHAB
Entrez,  Source
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide60580.0040.2879No
89LRRN1LRRN1
Entrez,  Source
leucine rich repeat neuronal 160690.0040.2874No
90KCNN3KCNN3
Entrez,  Source
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 361980.0010.2778No
91PCYT1BPCYT1B
Entrez,  Source
phosphate cytidylyltransferase 1, choline, beta62290.0010.2756No
92SLC17A7SLC17A7
Entrez,  Source
solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 76323-0.0000.2685No
93TCF4TCF4
Entrez,  Source
transcription factor 46338-0.0010.2675No
94BACE2BACE2
Entrez,  Source
beta-site APP-cleaving enzyme 26423-0.0020.2613No
95TNNI1TNNI1
Entrez,  Source
troponin I type 1 (skeletal, slow)6476-0.0030.2575No
96IL17FIL17F
Entrez,  Source
interleukin 17F6554-0.0050.2520No
97ANK3ANK3
Entrez,  Source
ankyrin 3, node of Ranvier (ankyrin G)6582-0.0050.2503No
98ATP6V0CATP6V0C
Entrez,  Source
ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c6588-0.0050.2502No
99NRXN1NRXN1
Entrez,  Source
neurexin 16602-0.0060.2496No
100PRRX1PRRX1
Entrez,  Source
paired related homeobox 16636-0.0060.2475No
101PANK4PANK4
Entrez,  Source
pantothenate kinase 46748-0.0080.2396No
102NRASNRAS
Entrez,  Source
neuroblastoma RAS viral (v-ras) oncogene homolog6918-0.0110.2274No
103SFRS15SFRS15
Entrez,  Source
splicing factor, arginine/serine-rich 156931-0.0110.2272No
104SEMA6CSEMA6C
Entrez,  Source
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C6955-0.0110.2262No
105DLL1DLL1
Entrez,  Source
delta-like 1 (Drosophila)7008-0.0120.2230No
106TOP1TOP1
Entrez,  Source
topoisomerase (DNA) I7017-0.0130.2232No
107DCNDCN
Entrez,  Source
decorin7217-0.0160.2091No
108GRID2GRID2
Entrez,  Source
glutamate receptor, ionotropic, delta 27487-0.0210.1901No
109GDNFGDNF
Entrez,  Source
glial cell derived neurotrophic factor7663-0.0250.1784No
110PAX6PAX6
Entrez,  Source
paired box gene 6 (aniridia, keratitis)7732-0.0260.1748No
111GCM1GCM1
Entrez,  Source
glial cells missing homolog 1 (Drosophila)7750-0.0260.1752No
112DLGAP4DLGAP4
Entrez,  Source
discs, large (Drosophila) homolog-associated protein 47775-0.0270.1750No
113ALKALK
Entrez,  Source
anaplastic lymphoma kinase (Ki-1)7870-0.0290.1697No
114DLL3DLL3
Entrez,  Source
delta-like 3 (Drosophila)7929-0.0300.1671No
115TCF2TCF2
Entrez,  Source
transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor7953-0.0300.1673No
116XYLT2XYLT2
Entrez,  Source
xylosyltransferase II7962-0.0300.1686No
117DSCR1DSCR1
Entrez,  Source
Down syndrome critical region gene 17972-0.0310.1698No
118SLC18A3SLC18A3
Entrez,  Source
solute carrier family 18 (vesicular acetylcholine), member 37984-0.0310.1709No
119ESRRAESRRA
Entrez,  Source
estrogen-related receptor alpha8092-0.0330.1649No
120GPR85GPR85
Entrez,  Source
G protein-coupled receptor 858109-0.0340.1658No
121CDK2CDK2
Entrez,  Source
cyclin-dependent kinase 28169-0.0350.1635No
122RAB5ARAB5A
Entrez,  Source
RAB5A, member RAS oncogene family8227-0.0360.1614No
123AMBNAMBN
Entrez,  Source
ameloblastin (enamel matrix protein)8671-0.0450.1306No
124NXPH1NXPH1
Entrez,  Source
neurexophilin 18833-0.0490.1214No
125ADORA2AADORA2A
Entrez,  Source
adenosine A2a receptor8894-0.0500.1200No
126H3F3BH3F3B
Entrez,  Source
H3 histone, family 3B (H3.3B)9390-0.0600.0862No
127PCDH8PCDH8
Entrez,  Source
protocadherin 89427-0.0610.0873No
128SYNPRSYNPR
Entrez,  Source
synaptoporin9740-0.0690.0679No
129AKT2AKT2
Entrez,  Source
v-akt murine thymoma viral oncogene homolog 29889-0.0730.0613No
130CRYZL1CRYZL1
Entrez,  Source
crystallin, zeta (quinone reductase)-like 110057-0.0780.0535No
131LHX3LHX3
Entrez,  Source
LIM homeobox 310087-0.0790.0562No
132LYNLYN
Entrez,  Source
v-yes-1 Yamaguchi sarcoma viral related oncogene homolog10258-0.0830.0485No
133MID1MID1
Entrez,  Source
midline 1 (Opitz/BBB syndrome)10356-0.0860.0466No
134RESTREST
Entrez,  Source
RE1-silencing transcription factor10648-0.0950.0305No
135MTUS1MTUS1
Entrez,  Source
mitochondrial tumor suppressor 110665-0.0960.0352No
136ITSN1ITSN1
Entrez,  Source
intersectin 1 (SH3 domain protein)10914-0.1050.0230No
137ADMADM
Entrez,  Source
adrenomedullin11063-0.1100.0187No
138ID2ID2
Entrez,  Source
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein11229-0.1170.0135No
139TSNAXTSNAX
Entrez,  Source
translin-associated factor X11254-0.1180.0190No
140TAS2R13TAS2R13
Entrez,  Source
taste receptor, type 2, member 1311390-0.1240.0165No
141DNAH7DNAH7
Entrez,  Source
dynein, axonemal, heavy chain 711659-0.1360.0047No
142ABTB2ABTB2
Entrez,  Source
ankyrin repeat and BTB (POZ) domain containing 211886-0.149-0.0031No
143PTENPTEN
Entrez,  Source
phosphatase and tensin homolog (mutated in multiple advanced cancers 1)11925-0.1520.0035No
144HOXA5HOXA5
Entrez,  Source
homeobox A511961-0.1540.0104No
145BAT2BAT2
Entrez,  Source
HLA-B associated transcript 212112-0.1660.0094No
146STMN1STMN1
Entrez,  Source
stathmin 1/oncoprotein 1812244-0.1750.0104No
147ADNPADNP
Entrez,  Source
activity-dependent neuroprotector12323-0.1810.0158No
148BZW2BZW2
Entrez,  Source
basic leucine zipper and W2 domains 212597-0.2100.0082No
149ARHGEF12ARHGEF12
Entrez,  Source
Rho guanine nucleotide exchange factor (GEF) 1212699-0.2250.0145No
150ITGB3BPITGB3BP
Entrez,  Source
integrin beta 3 binding protein (beta3-endonexin)12793-0.2400.0224No
151BST2BST2
Entrez,  Source
bone marrow stromal cell antigen 213047-0.3060.0224No
Table: GSEA details [plain text format]



Fig 2: YATGNWAAT_V$OCT_C   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: YATGNWAAT_V$OCT_C: Random ES distribution   
Gene set null distribution of ES for YATGNWAAT_V$OCT_C