Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_48h |
| GeneSet | AGTCTTA,MIR-499 |
| Enrichment Score (ES) | -0.538379 |
| Normalized Enrichment Score (NES) | -1.7418205 |
| Nominal p-value | 0.0021929825 |
| FDR q-value | 0.07079572 |
| FWER p-Value | 0.985 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | PLAG1 | PLAG1 Entrez, Source | pleiomorphic adenoma gene 1 | 1816 | 0.092 | -0.1014 | No |
| 2 | CUGBP2 | CUGBP2 Entrez, Source | CUG triplet repeat, RNA binding protein 2 | 2451 | 0.069 | -0.1227 | No |
| 3 | RNF44 | RNF44 Entrez, Source | ring finger protein 44 | 2838 | 0.059 | -0.1291 | No |
| 4 | TRAM1 | TRAM1 Entrez, Source | translocation associated membrane protein 1 | 2952 | 0.056 | -0.1164 | No |
| 5 | ZFHX1B | ZFHX1B Entrez, Source | zinc finger homeobox 1b | 3081 | 0.052 | -0.1061 | No |
| 6 | KIF3C | KIF3C Entrez, Source | kinesin family member 3C | 4852 | 0.018 | -0.2325 | No |
| 7 | VCPIP1 | VCPIP1 Entrez, Source | valosin containing protein (p97)/p47 complex interacting protein 1 | 5441 | 0.008 | -0.2736 | No |
| 8 | RIC8B | RIC8B Entrez, Source | resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) | 5515 | 0.007 | -0.2763 | No |
| 9 | H2AFZ | H2AFZ Entrez, Source | H2A histone family, member Z | 5766 | 0.003 | -0.2939 | No |
| 10 | TOP1 | TOP1 Entrez, Source | topoisomerase (DNA) I | 6078 | -0.001 | -0.3168 | No |
| 11 | ADAM10 | ADAM10 Entrez, Source | ADAM metallopeptidase domain 10 | 6375 | -0.006 | -0.3368 | No |
| 12 | TMED9 | TMED9 Entrez, Source | transmembrane emp24 protein transport domain containing 9 | 6392 | -0.006 | -0.3357 | No |
| 13 | SEC11L1 | SEC11L1 Entrez, Source | SEC11-like 1 (S. cerevisiae) | 6481 | -0.007 | -0.3395 | No |
| 14 | SOX11 | SOX11 Entrez, Source | SRY (sex determining region Y)-box 11 | 7530 | -0.023 | -0.4095 | No |
| 15 | NOVA1 | NOVA1 Entrez, Source | neuro-oncological ventral antigen 1 | 7658 | -0.025 | -0.4095 | No |
| 16 | PDCD4 | PDCD4 Entrez, Source | programmed cell death 4 (neoplastic transformation inhibitor) | 7707 | -0.026 | -0.4032 | No |
| 17 | ESRRG | ESRRG Entrez, Source | estrogen-related receptor gamma | 8140 | -0.033 | -0.4232 | No |
| 18 | MAPK6 | MAPK6 Entrez, Source | mitogen-activated protein kinase 6 | 8336 | -0.036 | -0.4240 | No |
| 19 | PPP3CA | PPP3CA Entrez, Source | protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha) | 8522 | -0.039 | -0.4230 | No |
| 20 | SDC2 | SDC2 Entrez, Source | syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan) | 8914 | -0.046 | -0.4349 | No |
| 21 | MARCKS | MARCKS Entrez, Source | myristoylated alanine-rich protein kinase C substrate | 8955 | -0.047 | -0.4202 | No |
| 22 | MYEF2 | MYEF2 Entrez, Source | myelin expression factor 2 | 9401 | -0.054 | -0.4331 | No |
| 23 | RCN2 | RCN2 Entrez, Source | reticulocalbin 2, EF-hand calcium binding domain | 9809 | -0.062 | -0.4399 | No |
| 24 | KPNA3 | KPNA3 Entrez, Source | karyopherin alpha 3 (importin alpha 4) | 10744 | -0.084 | -0.4782 | No |
| 25 | ROD1 | ROD1 Entrez, Source | ROD1 regulator of differentiation 1 (S. pombe) | 11546 | -0.107 | -0.4976 | Yes |
| 26 | HNRPC | HNRPC Entrez, Source | heterogeneous nuclear ribonucleoprotein C (C1/C2) | 11740 | -0.115 | -0.4685 | Yes |
| 27 | TESK2 | TESK2 Entrez, Source | testis-specific kinase 2 | 12056 | -0.129 | -0.4430 | Yes |
| 28 | NAV2 | NAV2 Entrez, Source | neuron navigator 2 | 12084 | -0.131 | -0.3953 | Yes |
| 29 | DDX1 | DDX1 Entrez, Source | DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 | 12162 | -0.135 | -0.3498 | Yes |
| 30 | UBE2V2 | UBE2V2 Entrez, Source | ubiquitin-conjugating enzyme E2 variant 2 | 12194 | -0.136 | -0.3003 | Yes |
| 31 | MECP2 | MECP2 Entrez, Source | methyl CpG binding protein 2 (Rett syndrome) | 12329 | -0.144 | -0.2554 | Yes |
| 32 | QKI | QKI Entrez, Source | quaking homolog, KH domain RNA binding (mouse) | 12354 | -0.146 | -0.2017 | Yes |
| 33 | ENPP2 | ENPP2 Entrez, Source | ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) | 12368 | -0.147 | -0.1469 | Yes |
| 34 | PTBP2 | PTBP2 Entrez, Source | polypyrimidine tract binding protein 2 | 12573 | -0.160 | -0.1014 | Yes |
| 35 | SOX6 | SOX6 Entrez, Source | SRY (sex determining region Y)-box 6 | 12885 | -0.198 | -0.0496 | Yes |
| 36 | ZBTB10 | ZBTB10 Entrez, Source | zinc finger and BTB domain containing 10 | 13012 | -0.220 | 0.0248 | Yes |
