Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | CROONQUIST_IL6_STROMA_UP |
| Enrichment Score (ES) | 0.85383147 |
| Normalized Enrichment Score (NES) | 2.4501166 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.0 |
| FWER p-Value | 0.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | IGFBP7 | IGFBP7 Entrez, Source | insulin-like growth factor binding protein 7 | 2 | 1.254 | 0.1302 | Yes |
| 2 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 6 | 1.154 | 0.2499 | Yes |
| 3 | FOS | FOS Entrez, Source | v-fos FBJ murine osteosarcoma viral oncogene homolog | 9 | 0.936 | 0.3470 | Yes |
| 4 | SLC25A4 | SLC25A4 Entrez, Source | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 | 14 | 0.830 | 0.4331 | Yes |
| 5 | RGS2 | RGS2 Entrez, Source | regulator of G-protein signalling 2, 24kDa | 25 | 0.771 | 0.5125 | Yes |
| 6 | CTGF | CTGF Entrez, Source | connective tissue growth factor | 27 | 0.757 | 0.5910 | Yes |
| 7 | SERPINE1 | SERPINE1 Entrez, Source | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 | 56 | 0.628 | 0.6542 | Yes |
| 8 | CXCL2 | CXCL2 Entrez, Source | chemokine (C-X-C motif) ligand 2 | 138 | 0.458 | 0.6957 | Yes |
| 9 | LOX | LOX Entrez, Source | lysyl oxidase | 154 | 0.441 | 0.7404 | Yes |
| 10 | TMSB4X | TMSB4X Entrez, Source | thymosin, beta 4, X-linked | 315 | 0.295 | 0.7590 | Yes |
| 11 | SPARC | SPARC Entrez, Source | secreted protein, acidic, cysteine-rich (osteonectin) | 317 | 0.293 | 0.7894 | Yes |
| 12 | CCL3 | CCL3 Entrez, Source | chemokine (C-C motif) ligand 3 | 353 | 0.281 | 0.8160 | Yes |
| 13 | IER3 | IER3 Entrez, Source | immediate early response 3 | 392 | 0.264 | 0.8405 | Yes |
| 14 | IGFBP3 | IGFBP3 Entrez, Source | insulin-like growth factor binding protein 3 | 571 | 0.212 | 0.8492 | Yes |
| 15 | NFKBIA | NFKBIA Entrez, Source | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha | 754 | 0.176 | 0.8538 | Yes |
| 16 | LOXL1 | LOXL1 Entrez, Source | lysyl oxidase-like 1 | 1035 | 0.143 | 0.8477 | No |
| 17 | DUSP1 | DUSP1 Entrez, Source | dual specificity phosphatase 1 | 1261 | 0.123 | 0.8436 | No |
| 18 | TGM2 | TGM2 Entrez, Source | transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) | 1650 | 0.100 | 0.8248 | No |
| 19 | SULF1 | SULF1 Entrez, Source | sulfatase 1 | 1955 | 0.087 | 0.8110 | No |
| 20 | ACTA2 | ACTA2 Entrez, Source | actin, alpha 2, smooth muscle, aorta | 2074 | 0.082 | 0.8107 | No |
| 21 | IL6 | IL6 Entrez, Source | interleukin 6 (interferon, beta 2) | 3854 | 0.036 | 0.6808 | No |
| 22 | NOTCH3 | NOTCH3 Entrez, Source | Notch homolog 3 (Drosophila) | 4689 | 0.020 | 0.6202 | No |
| 23 | TGFBI | TGFBI Entrez, Source | transforming growth factor, beta-induced, 68kDa | 5439 | 0.008 | 0.5648 | No |
| 24 | CCL4 | CCL4 Entrez, Source | chemokine (C-C motif) ligand 4 | 6591 | -0.009 | 0.4793 | No |
| 25 | THBS2 | THBS2 Entrez, Source | thrombospondin 2 | 6731 | -0.011 | 0.4700 | No |
| 26 | NR4A2 | NR4A2 Entrez, Source | nuclear receptor subfamily 4, group A, member 2 | 8840 | -0.044 | 0.3163 | No |
| 27 | CSPG2 | CSPG2 Entrez, Source | chondroitin sulfate proteoglycan 2 (versican) | 9690 | -0.060 | 0.2588 | No |
| 28 | GABBR2 | GABBR2 Entrez, Source | gamma-aminobutyric acid (GABA) B receptor, 2 | 12401 | -0.149 | 0.0707 | No |
