Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
Upregulated in class | double_gel_48h |
GeneSet | DOUBLE_STRANDED_DNA_BINDING |
Enrichment Score (ES) | -0.60026807 |
Normalized Enrichment Score (NES) | -1.6264206 |
Nominal p-value | 0.031380754 |
FDR q-value | 0.12689081 |
FWER p-Value | 1.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | SATB1 | SATB1 Entrez,  Source | special AT-rich sequence binding protein 1 (binds to nuclear matrix/scaffold-associating DNA's) | 2276 | 0.075 | -0.1309 | No |
2 | RBMS1 | RBMS1 Entrez,  Source | RNA binding motif, single stranded interacting protein 1 | 4322 | 0.027 | -0.2700 | No |
3 | MSH2 | MSH2 Entrez,  Source | mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) | 4414 | 0.025 | -0.2634 | No |
4 | HLF | HLF Entrez,  Source | hepatic leukemia factor | 4632 | 0.021 | -0.2684 | No |
5 | MSH3 | MSH3 Entrez,  Source | mutS homolog 3 (E. coli) | 5310 | 0.010 | -0.3139 | No |
6 | SMAD2 | SMAD2 Entrez,  Source | SMAD, mothers against DPP homolog 2 (Drosophila) | 8430 | -0.038 | -0.5277 | No |
7 | HNRPDL | HNRPDL Entrez,  Source | heterogeneous nuclear ribonucleoprotein D-like | 8663 | -0.041 | -0.5231 | No |
8 | XRCC5 | XRCC5 Entrez,  Source | X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kDa) | 9405 | -0.054 | -0.5497 | No |
9 | XRCC6 | XRCC6 Entrez,  Source | X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) | 9780 | -0.062 | -0.5449 | No |
10 | PNKP | PNKP Entrez,  Source | polynucleotide kinase 3'-phosphatase | 10519 | -0.078 | -0.5584 | Yes |
11 | MTERF | MTERF Entrez,  Source | mitochondrial transcription termination factor | 10596 | -0.080 | -0.5215 | Yes |
12 | TP53 | TP53 Entrez,  Source | tumor protein p53 (Li-Fraumeni syndrome) | 11337 | -0.100 | -0.5236 | Yes |
13 | SAFB | SAFB Entrez,  Source | scaffold attachment factor B | 11983 | -0.126 | -0.5049 | Yes |
14 | CSDA | CSDA Entrez,  Source | cold shock domain protein A | 12392 | -0.148 | -0.4565 | Yes |
15 | TERF1 | TERF1 Entrez,  Source | telomeric repeat binding factor (NIMA-interacting) 1 | 12812 | -0.187 | -0.3880 | Yes |
16 | FEN1 | FEN1 Entrez,  Source | flap structure-specific endonuclease 1 | 13004 | -0.219 | -0.2853 | Yes |
17 | APTX | APTX Entrez,  Source | aprataxin | 13079 | -0.242 | -0.1613 | Yes |
18 | MRE11A | MRE11A Entrez,  Source | MRE11 meiotic recombination 11 homolog A (S. cerevisiae) | 13244 | -0.339 | 0.0074 | Yes |