Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | EXTRACELLULAR_MATRIX_PART |
| Enrichment Score (ES) | 0.69245183 |
| Normalized Enrichment Score (NES) | 1.9884582 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.005187406 |
| FWER p-Value | 0.238 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 6 | 1.154 | 0.2137 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 21 | 0.785 | 0.3584 | Yes |
| 3 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 34 | 0.714 | 0.4900 | Yes |
| 4 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 252 | 0.342 | 0.5371 | Yes |
| 5 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 433 | 0.249 | 0.5698 | Yes |
| 6 | EFEMP2 | EFEMP2 Entrez, Source | EGF-containing fibulin-like extracellular matrix protein 2 | 482 | 0.234 | 0.6096 | Yes |
| 7 | SGCE | SGCE Entrez, Source | sarcoglycan, epsilon | 650 | 0.197 | 0.6337 | Yes |
| 8 | USH2A | USH2A Entrez, Source | Usher syndrome 2A (autosomal recessive, mild) | 684 | 0.187 | 0.6660 | Yes |
| 9 | COLQ | COLQ Entrez, Source | collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase | 888 | 0.157 | 0.6800 | Yes |
| 10 | NID2 | NID2 Entrez, Source | nidogen 2 (osteonidogen) | 1349 | 0.116 | 0.6670 | Yes |
| 11 | FBN1 | FBN1 Entrez, Source | fibrillin 1 | 1643 | 0.100 | 0.6636 | Yes |
| 12 | COL11A1 | COL11A1 Entrez, Source | collagen, type XI, alpha 1 | 1749 | 0.095 | 0.6734 | Yes |
| 13 | COL4A4 | COL4A4 Entrez, Source | collagen, type IV, alpha 4 | 1802 | 0.093 | 0.6867 | Yes |
| 14 | COL18A1 | COL18A1 Entrez, Source | collagen, type XVIII, alpha 1 | 1942 | 0.087 | 0.6925 | Yes |
| 15 | TINAG | TINAG Entrez, Source | tubulointerstitial nephritis antigen | 2372 | 0.072 | 0.6736 | No |
| 16 | COL5A1 | COL5A1 Entrez, Source | collagen, type V, alpha 1 | 2660 | 0.063 | 0.6638 | No |
| 17 | SGCG | SGCG Entrez, Source | sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) | 2905 | 0.057 | 0.6561 | No |
| 18 | COL9A1 | COL9A1 Entrez, Source | collagen, type IX, alpha 1 | 3413 | 0.045 | 0.6263 | No |
| 19 | COL16A1 | COL16A1 Entrez, Source | collagen, type XVI, alpha 1 | 3530 | 0.042 | 0.6254 | No |
| 20 | LAMA3 | LAMA3 Entrez, Source | laminin, alpha 3 | 4300 | 0.027 | 0.5727 | No |
| 21 | LUM | LUM Entrez, Source | lumican | 4533 | 0.023 | 0.5595 | No |
| 22 | MUC5AC | MUC5AC Entrez, Source | mucin 5AC, oligomeric mucus/gel-forming | 6169 | -0.003 | 0.4372 | No |
| 23 | COL15A1 | COL15A1 Entrez, Source | collagen, type XV, alpha 1 | 7379 | -0.021 | 0.3502 | No |
| 24 | COL10A1 | COL10A1 Entrez, Source | collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia) | 9784 | -0.062 | 0.1811 | No |
| 25 | SMC3 | SMC3 Entrez, Source | structural maintenance of chromosomes 3 | 10069 | -0.068 | 0.1724 | No |
| 26 | CAV3 | CAV3 Entrez, Source | caveolin 3 | 10854 | -0.087 | 0.1296 | No |
| 27 | DMD | DMD Entrez, Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 12470 | -0.153 | 0.0367 | No |
| 28 | COL5A3 | COL5A3 Entrez, Source | collagen, type V, alpha 3 | 12502 | -0.155 | 0.0631 | No |
