Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_48h.class.cls
#double_gel_8d_versus_double_gel_48h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_48h_repos
Upregulated in classdouble_gel_8d
GeneSetGLYCOLYSIS
Enrichment Score (ES)0.64766395
Normalized Enrichment Score (NES)1.9821405
Nominal p-value0.0
FDR q-value0.005244694
FWER p-Value0.252
Table: GSEA Results Summary



Fig 1: Enrichment plot: GLYCOLYSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LDHBLDHB
Entrez,  Source
lactate dehydrogenase B220.7850.1345Yes
2PFKPPFKP
Entrez,  Source
phosphofructokinase, platelet290.7530.2647Yes
3G6PCG6PC
Entrez,  Source
glucose-6-phosphatase, catalytic subunit570.6280.3716Yes
4ADHFE1ADHFE1
Entrez,  Source
alcohol dehydrogenase, iron containing, 1740.5670.4688Yes
5HK1HK1
Entrez,  Source
hexokinase 12510.3420.5149Yes
6DLATDLAT
Entrez,  Source
dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)4440.2460.5432Yes
7ALDH3A1ALDH3A1
Entrez,  Source
aldehyde dehydrogenase 3 family, memberA15170.2230.5766Yes
8FBP1FBP1
Entrez,  Source
fructose-1,6-bisphosphatase 17200.1820.5930Yes
9ALDH1A1ALDH1A1
Entrez,  Source
aldehyde dehydrogenase 1 family, member A17390.1780.6225Yes
10ALDH3A2ALDH3A2
Entrez,  Source
aldehyde dehydrogenase 3 family, member A27980.1700.6477Yes
11ALDOAALDOA
Entrez,  Source
aldolase A, fructose-bisphosphate15640.1040.6083No
12ALDOCALDOC
Entrez,  Source
aldolase C, fructose-bisphosphate19800.0860.5919No
13HK2HK2
Entrez,  Source
hexokinase 226610.0630.5518No
14ADH1AADH1A
Entrez,  Source
alcohol dehydrogenase 1A (class I), alpha polypeptide30720.0520.5301No
15ALDH2ALDH2
Entrez,  Source
aldehyde dehydrogenase 2 family (mitochondrial)32450.0480.5255No
16ALDOBALDOB
Entrez,  Source
aldolase B, fructose-bisphosphate32530.0480.5334No
17ADH7ADH7
Entrez,  Source
alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide32540.0480.5417No
18GPIGPI
Entrez,  Source
glucose phosphate isomerase32870.0480.5476No
19PDHA1PDHA1
Entrez,  Source
pyruvate dehydrogenase (lipoamide) alpha 133650.0460.5498No
20PDHA2PDHA2
Entrez,  Source
pyruvate dehydrogenase (lipoamide) alpha 234670.0440.5498No
21ALDH1B1ALDH1B1
Entrez,  Source
aldehyde dehydrogenase 1 family, member B134800.0430.5564No
22LDHCLDHC
Entrez,  Source
lactate dehydrogenase C36720.0390.5488No
23PDHBPDHB
Entrez,  Source
pyruvate dehydrogenase (lipoamide) beta37550.0370.5492No
24BPGMBPGM
Entrez,  Source
2,3-bisphosphoglycerate mutase43440.0260.5095No
25FBP2FBP2
Entrez,  Source
fructose-1,6-bisphosphatase 248050.0180.4782No
26GAPDHGAPDH
Entrez,  Source
glyceraldehyde-3-phosphate dehydrogenase50740.0140.4604No
27LDHALDHA
Entrez,  Source
lactate dehydrogenase A55360.0070.4269No
28PFKMPFKM
Entrez,  Source
phosphofructokinase, muscle57380.0040.4125No
29ADH6ADH6
Entrez,  Source
alcohol dehydrogenase 6 (class V)57400.0040.4130No
30PGM1PGM1
Entrez,  Source
phosphoglucomutase 16030-0.0000.3913No
31ADH4ADH4
Entrez,  Source
alcohol dehydrogenase 4 (class II), pi polypeptide6171-0.0030.3813No
32ENO2ENO2
Entrez,  Source
enolase 2 (gamma, neuronal)6473-0.0070.3599No
33ALDH3B1ALDH3B1
Entrez,  Source
aldehyde dehydrogenase 3 family, member B16931-0.0140.3280No
34ALDH1A2ALDH1A2
Entrez,  Source
aldehyde dehydrogenase 1 family, member A27402-0.0210.2962No
35PGAM1PGAM1
Entrez,  Source
phosphoglycerate mutase 1 (brain)7875-0.0290.2657No
36ENO3ENO3
Entrez,  Source
enolase 3 (beta, muscle)8467-0.0380.2280No
37ALDH9A1ALDH9A1
Entrez,  Source
aldehyde dehydrogenase 9 family, member A18536-0.0390.2297No
38DLDDLD
Entrez,  Source
dihydrolipoamide dehydrogenase9409-0.0540.1735No
39AKR1A1AKR1A1
Entrez,  Source
aldo-keto reductase family 1, member A1 (aldehyde reductase)9489-0.0560.1773No
40TPI1TPI1
Entrez,  Source
triosephosphate isomerase 19804-0.0620.1645No
41PGK1PGK1
Entrez,  Source
phosphoglycerate kinase 19880-0.0640.1699No
42PKLRPKLR
Entrez,  Source
pyruvate kinase, liver and RBC13114-0.257-0.0286No
43GCKGCK
Entrez,  Source
glucokinase (hexokinase 4, maturity onset diabetes of the young 2)13135-0.2630.0156No
Table: GSEA details [plain text format]



Fig 2: GLYCOLYSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GLYCOLYSIS: Random ES distribution   
Gene set null distribution of ES for GLYCOLYSIS