Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | HDACI_COLON_TSA2HRS_UP |
| Enrichment Score (ES) | 0.6253347 |
| Normalized Enrichment Score (NES) | 1.8935385 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.013182518 |
| FWER p-Value | 0.638 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | FOS | FOS Entrez, Source | v-fos FBJ murine osteosarcoma viral oncogene homolog | 9 | 0.936 | 0.1961 | Yes |
| 2 | SERPINE1 | SERPINE1 Entrez, Source | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 | 56 | 0.628 | 0.3246 | Yes |
| 3 | PC | PC Entrez, Source | pyruvate carboxylase | 292 | 0.313 | 0.3728 | Yes |
| 4 | RHBDF1 | RHBDF1 Entrez, Source | rhomboid 5 homolog 1 (Drosophila) | 431 | 0.250 | 0.4150 | Yes |
| 5 | SLC20A1 | SLC20A1 Entrez, Source | solute carrier family 20 (phosphate transporter), member 1 | 484 | 0.232 | 0.4599 | Yes |
| 6 | RHOB | RHOB Entrez, Source | ras homolog gene family, member B | 709 | 0.184 | 0.4817 | Yes |
| 7 | CALCOCO1 | CALCOCO1 Entrez, Source | calcium binding and coiled-coil domain 1 | 771 | 0.174 | 0.5137 | Yes |
| 8 | NEU1 | NEU1 Entrez, Source | sialidase 1 (lysosomal sialidase) | 827 | 0.166 | 0.5444 | Yes |
| 9 | GNAI2 | GNAI2 Entrez, Source | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 | 931 | 0.153 | 0.5688 | Yes |
| 10 | GNPTG | GNPTG Entrez, Source | N-acetylglucosamine-1-phosphate transferase, gamma subunit | 1299 | 0.120 | 0.5665 | Yes |
| 11 | PIP5K2C | PIP5K2C Entrez, Source | phosphatidylinositol-4-phosphate 5-kinase, type II, gamma | 1309 | 0.119 | 0.5909 | Yes |
| 12 | SLC27A1 | SLC27A1 Entrez, Source | solute carrier family 27 (fatty acid transporter), member 1 | 1356 | 0.116 | 0.6117 | Yes |
| 13 | BIRC4 | BIRC4 Entrez, Source | baculoviral IAP repeat-containing 4 | 1664 | 0.099 | 0.6095 | Yes |
| 14 | PLAG1 | PLAG1 Entrez, Source | pleiomorphic adenoma gene 1 | 1816 | 0.092 | 0.6175 | Yes |
| 15 | PER1 | PER1 Entrez, Source | period homolog 1 (Drosophila) | 1956 | 0.087 | 0.6253 | Yes |
| 16 | ERRFI1 | ERRFI1 Entrez, Source | ERBB receptor feedback inhibitor 1 | 2488 | 0.068 | 0.5998 | No |
| 17 | MAP1LC3B | MAP1LC3B Entrez, Source | microtubule-associated protein 1 light chain 3 beta | 2854 | 0.059 | 0.5848 | No |
| 18 | INPP5E | INPP5E Entrez, Source | inositol polyphosphate-5-phosphatase, 72 kDa | 3078 | 0.052 | 0.5790 | No |
| 19 | CDH1 | CDH1 Entrez, Source | cadherin 1, type 1, E-cadherin (epithelial) | 3296 | 0.047 | 0.5726 | No |
| 20 | SDC4 | SDC4 Entrez, Source | syndecan 4 (amphiglycan, ryudocan) | 3385 | 0.045 | 0.5756 | No |
| 21 | ROCK1 | ROCK1 Entrez, Source | Rho-associated, coiled-coil containing protein kinase 1 | 3389 | 0.045 | 0.5849 | No |
| 22 | SPARCL1 | SPARCL1 Entrez, Source | SPARC-like 1 (mast9, hevin) | 3771 | 0.037 | 0.5641 | No |
| 23 | CDKN1C | CDKN1C Entrez, Source | cyclin-dependent kinase inhibitor 1C (p57, Kip2) | 5704 | 0.004 | 0.4198 | No |
| 24 | KCNA1 | KCNA1 Entrez, Source | potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) | 5912 | 0.001 | 0.4045 | No |
| 25 | CDH11 | CDH11 Entrez, Source | cadherin 11, type 2, OB-cadherin (osteoblast) | 7101 | -0.017 | 0.3188 | No |
| 26 | GNL1 | GNL1 Entrez, Source | guanine nucleotide binding protein-like 1 | 7550 | -0.023 | 0.2900 | No |
| 27 | FLNB | FLNB Entrez, Source | filamin B, beta (actin binding protein 278) | 8583 | -0.040 | 0.2209 | No |
| 28 | P4HB | P4HB Entrez, Source | procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide | 9064 | -0.048 | 0.1950 | No |
| 29 | CYB5B | CYB5B Entrez, Source | cytochrome b5 type B (outer mitochondrial membrane) | 9119 | -0.049 | 0.2013 | No |
| 30 | GLI3 | GLI3 Entrez, Source | GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) | 10439 | -0.076 | 0.1181 | No |
| 31 | ZUBR1 | ZUBR1 Entrez, Source | zinc finger, UBR1 type 1 | 11012 | -0.091 | 0.0942 | No |
| 32 | TSNAX | TSNAX Entrez, Source | translin-associated factor X | 11363 | -0.101 | 0.0891 | No |
| 33 | VEGF | VEGF Entrez, Source | vascular endothelial growth factor | 11386 | -0.102 | 0.1088 | No |
| 34 | ID2 | ID2 Entrez, Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 12777 | -0.181 | 0.0425 | No |
