Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_48h.class.cls
#double_gel_8d_versus_double_gel_48h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_48h_repos
Upregulated in classdouble_gel_8d
GeneSetHSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS
Enrichment Score (ES)0.60375285
Normalized Enrichment Score (NES)1.9144696
Nominal p-value0.001754386
FDR q-value0.010836435
FWER p-Value0.544
Table: GSEA Results Summary



Fig 1: Enrichment plot: HSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LDHBLDHB
Entrez,  Source
lactate dehydrogenase B220.7850.1319Yes
2PFKPPFKP
Entrez,  Source
phosphofructokinase, platelet290.7530.2596Yes
3G6PCG6PC
Entrez,  Source
glucose-6-phosphatase, catalytic subunit570.6280.3644Yes
4ADHFE1ADHFE1
Entrez,  Source
alcohol dehydrogenase, iron containing, 1740.5670.4597Yes
5HK1HK1
Entrez,  Source
hexokinase 12510.3420.5047Yes
6DLATDLAT
Entrez,  Source
dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)4440.2460.5322Yes
7ALDH3A1ALDH3A1
Entrez,  Source
aldehyde dehydrogenase 3 family, memberA15170.2230.5648Yes
8FBP1FBP1
Entrez,  Source
fructose-1,6-bisphosphatase 17200.1820.5806Yes
9ALDH3A2ALDH3A2
Entrez,  Source
aldehyde dehydrogenase 3 family, member A27980.1700.6038Yes
10ALDOAALDOA
Entrez,  Source
aldolase A, fructose-bisphosphate15640.1040.5640No
11PFKLPFKL
Entrez,  Source
phosphofructokinase, liver16240.1010.5768No
12ALDOCALDOC
Entrez,  Source
aldolase C, fructose-bisphosphate19800.0860.5647No
13HK2HK2
Entrez,  Source
hexokinase 226610.0630.5243No
14ADH1AADH1A
Entrez,  Source
alcohol dehydrogenase 1A (class I), alpha polypeptide30720.0520.5024No
15PGAM2PGAM2
Entrez,  Source
phosphoglycerate mutase 2 (muscle)31690.0500.5037No
16ALDH2ALDH2
Entrez,  Source
aldehyde dehydrogenase 2 family (mitochondrial)32450.0480.5063No
17ALDOBALDOB
Entrez,  Source
aldolase B, fructose-bisphosphate32530.0480.5140No
18ADH7ADH7
Entrez,  Source
alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide32540.0480.5222No
19GPIGPI
Entrez,  Source
glucose phosphate isomerase32870.0480.5279No
20PDHA1PDHA1
Entrez,  Source
pyruvate dehydrogenase (lipoamide) alpha 133650.0460.5299No
21PDHA2PDHA2
Entrez,  Source
pyruvate dehydrogenase (lipoamide) alpha 234670.0440.5298No
22ALDH1B1ALDH1B1
Entrez,  Source
aldehyde dehydrogenase 1 family, member B134800.0430.5363No
23ALDH7A1ALDH7A1
Entrez,  Source
aldehyde dehydrogenase 7 family, member A135920.0410.5349No
24LDHCLDHC
Entrez,  Source
lactate dehydrogenase C36720.0390.5356No
25PDHBPDHB
Entrez,  Source
pyruvate dehydrogenase (lipoamide) beta37550.0370.5358No
26BPGMBPGM
Entrez,  Source
2,3-bisphosphoglycerate mutase43440.0260.4961No
27FBP2FBP2
Entrez,  Source
fructose-1,6-bisphosphatase 248050.0180.4646No
28GAPDHGAPDH
Entrez,  Source
glyceraldehyde-3-phosphate dehydrogenase50740.0140.4468No
29GALMGALM
Entrez,  Source
galactose mutarotase (aldose 1-epimerase)54980.0070.4163No
30LDHALDHA
Entrez,  Source
lactate dehydrogenase A55360.0070.4147No
31PFKMPFKM
Entrez,  Source
phosphofructokinase, muscle57380.0040.4002No
32ADH6ADH6
Entrez,  Source
alcohol dehydrogenase 6 (class V)57400.0040.4007No
33PGM1PGM1
Entrez,  Source
phosphoglucomutase 16030-0.0000.3790No
34ADH4ADH4
Entrez,  Source
alcohol dehydrogenase 4 (class II), pi polypeptide6171-0.0030.3689No
35ENO2ENO2
Entrez,  Source
enolase 2 (gamma, neuronal)6473-0.0070.3475No
36ALDH3B1ALDH3B1
Entrez,  Source
aldehyde dehydrogenase 3 family, member B16931-0.0140.3155No
37GAPDHSGAPDHS
Entrez,  Source
glyceraldehyde-3-phosphate dehydrogenase, spermatogenic7146-0.0170.3024No
38PGAM1PGAM1
Entrez,  Source
phosphoglycerate mutase 1 (brain)7875-0.0290.2525No
39ENO3ENO3
Entrez,  Source
enolase 3 (beta, muscle)8467-0.0380.2146No
40ALDH9A1ALDH9A1
Entrez,  Source
aldehyde dehydrogenase 9 family, member A18536-0.0390.2162No
41DLDDLD
Entrez,  Source
dihydrolipoamide dehydrogenase9409-0.0540.1599No
42AKR1A1AKR1A1
Entrez,  Source
aldo-keto reductase family 1, member A1 (aldehyde reductase)9489-0.0560.1634No
43TPI1TPI1
Entrez,  Source
triosephosphate isomerase 19804-0.0620.1504No
44PGK1PGK1
Entrez,  Source
phosphoglycerate kinase 19880-0.0640.1556No
45LDHAL6BLDHAL6B
Entrez,  Source
lactate dehydrogenase A-like 6B11134-0.0940.0774No
46PKLRPKLR
Entrez,  Source
pyruvate kinase, liver and RBC13114-0.257-0.0277No
47GCKGCK
Entrez,  Source
glucokinase (hexokinase 4, maturity onset diabetes of the young 2)13135-0.2630.0156No
Table: GSEA details [plain text format]



Fig 2: HSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS: Random ES distribution   
Gene set null distribution of ES for HSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS