Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
Upregulated in class | double_gel_8d |
GeneSet | IGLESIAS_E2FMINUS_UP |
Enrichment Score (ES) | 0.6650097 |
Normalized Enrichment Score (NES) | 2.404052 |
Nominal p-value | 0.0 |
FDR q-value | 0.0 |
FWER p-Value | 0.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | COL1A2 | COL1A2 Entrez,  Source | collagen, type I, alpha 2 | 6 | 1.154 | 0.0633 | Yes |
2 | CCND2 | CCND2 Entrez,  Source | cyclin D2 | 10 | 0.885 | 0.1121 | Yes |
3 | ANXA1 | ANXA1 Entrez,  Source | annexin A1 | 11 | 0.884 | 0.1610 | Yes |
4 | SLC25A4 | SLC25A4 Entrez,  Source | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 | 14 | 0.830 | 0.2067 | Yes |
5 | DAB2 | DAB2 Entrez,  Source | disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) | 18 | 0.797 | 0.2506 | Yes |
6 | COL3A1 | COL3A1 Entrez,  Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 21 | 0.785 | 0.2938 | Yes |
7 | COL5A2 | COL5A2 Entrez,  Source | collagen, type V, alpha 2 | 34 | 0.714 | 0.3324 | Yes |
8 | LPL | LPL Entrez,  Source | lipoprotein lipase | 45 | 0.671 | 0.3688 | Yes |
9 | COL4A1 | COL4A1 Entrez,  Source | collagen, type IV, alpha 1 | 58 | 0.625 | 0.4024 | Yes |
10 | LGALS1 | LGALS1 Entrez,  Source | lectin, galactoside-binding, soluble, 1 (galectin 1) | 60 | 0.614 | 0.4363 | Yes |
11 | EMP1 | EMP1 Entrez,  Source | epithelial membrane protein 1 | 101 | 0.510 | 0.4615 | Yes |
12 | GJA1 | GJA1 Entrez,  Source | gap junction protein, alpha 1, 43kDa (connexin 43) | 173 | 0.414 | 0.4790 | Yes |
13 | SERPINH1 | SERPINH1 Entrez,  Source | serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) | 184 | 0.403 | 0.5005 | Yes |
14 | SERPINB6A | 216 | 0.372 | 0.5188 | Yes | ||
15 | CFD | CFD Entrez,  Source | complement factor D (adipsin) | 228 | 0.365 | 0.5381 | Yes |
16 | CD9 | CD9 Entrez,  Source | CD9 molecule | 283 | 0.320 | 0.5518 | Yes |
17 | TMSB4X | TMSB4X Entrez,  Source | thymosin, beta 4, X-linked | 315 | 0.295 | 0.5657 | Yes |
18 | SPARC | SPARC Entrez,  Source | secreted protein, acidic, cysteine-rich (osteonectin) | 317 | 0.293 | 0.5818 | Yes |
19 | S100A6 | S100A6 Entrez,  Source | S100 calcium binding protein A6 | 365 | 0.274 | 0.5934 | Yes |
20 | GSN | GSN Entrez,  Source | gelsolin (amyloidosis, Finnish type) | 483 | 0.233 | 0.5975 | Yes |
21 | TYROBP | TYROBP Entrez,  Source | TYRO protein tyrosine kinase binding protein | 586 | 0.208 | 0.6013 | Yes |
22 | COL6A2 | COL6A2 Entrez,  Source | collagen, type VI, alpha 2 | 658 | 0.195 | 0.6067 | Yes |
23 | COL1A1 | COL1A1 Entrez,  Source | collagen, type I, alpha 1 | 673 | 0.190 | 0.6162 | Yes |
24 | RHOB | RHOB Entrez,  Source | ras homolog gene family, member B | 709 | 0.184 | 0.6237 | Yes |
25 | S100A11 | S100A11 Entrez,  Source | S100 calcium binding protein A11 | 735 | 0.179 | 0.6318 | Yes |
26 | CTSE | CTSE Entrez,  Source | cathepsin E | 748 | 0.177 | 0.6406 | Yes |
27 | NFKBIA | NFKBIA Entrez,  Source | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha | 754 | 0.176 | 0.6500 | Yes |
28 | GAS6 | GAS6 Entrez,  Source | growth arrest-specific 6 | 883 | 0.158 | 0.6491 | Yes |
29 | GNAI2 | GNAI2 Entrez,  Source | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 | 931 | 0.153 | 0.6540 | Yes |
30 | ACADL | ACADL Entrez,  Source | acyl-Coenzyme A dehydrogenase, long chain | 976 | 0.149 | 0.6589 | Yes |
31 | ANXA3 | ANXA3 Entrez,  Source | annexin A3 | 1170 | 0.131 | 0.6516 | Yes |
32 | GADD45B | GADD45B Entrez,  Source | growth arrest and DNA-damage-inducible, beta | 1210 | 0.127 | 0.6556 | Yes |
33 | CLK1 | CLK1 Entrez,  Source | CDC-like kinase 1 | 1262 | 0.123 | 0.6586 | Yes |
34 | IGSF4 | IGSF4 Entrez,  Source | immunoglobulin superfamily, member 4 | 1345 | 0.117 | 0.6588 | Yes |
35 | NID2 | NID2 Entrez,  Source | nidogen 2 (osteonidogen) | 1349 | 0.116 | 0.6650 | Yes |
36 | ARSA | ARSA Entrez,  Source | arylsulfatase A | 1524 | 0.107 | 0.6578 | No |
37 | NFIB | NFIB Entrez,  Source | nuclear factor I/B | 1582 | 0.103 | 0.6592 | No |
38 | COL18A1 | COL18A1 Entrez,  Source | collagen, type XVIII, alpha 1 | 1942 | 0.087 | 0.6369 | No |
39 | ALAS2 | ALAS2 Entrez,  Source | aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia) | 2058 | 0.083 | 0.6328 | No |
40 | ACTA2 | ACTA2 Entrez,  Source | actin, alpha 2, smooth muscle, aorta | 2074 | 0.082 | 0.6362 | No |
41 | APOE | APOE Entrez,  Source | apolipoprotein E | 2123 | 0.080 | 0.6370 | No |
42 | CD53 | CD53 Entrez,  Source | CD53 molecule | 2501 | 0.068 | 0.6122 | No |
43 | LCP1 | LCP1 Entrez,  Source | lymphocyte cytosolic protein 1 (L-plastin) | 2802 | 0.060 | 0.5929 | No |
44 | S100A10 | S100A10 Entrez,  Source | S100 calcium binding protein A10 | 2981 | 0.055 | 0.5825 | No |
45 | C1QB | C1QB Entrez,  Source | complement component 1, q subcomponent, B chain | 3017 | 0.054 | 0.5828 | No |
46 | CTSS | CTSS Entrez,  Source | cathepsin S | 3084 | 0.052 | 0.5807 | No |
47 | NPTN | NPTN Entrez,  Source | neuroplastin | 3153 | 0.051 | 0.5784 | No |
48 | SS18 | SS18 Entrez,  Source | synovial sarcoma translocation, chromosome 18 | 3236 | 0.049 | 0.5749 | No |
49 | DCN | DCN Entrez,  Source | decorin | 3405 | 0.045 | 0.5647 | No |
50 | CD47 | CD47 Entrez,  Source | CD47 molecule | 3700 | 0.039 | 0.5446 | No |
51 | CAPZA2 | CAPZA2 Entrez,  Source | capping protein (actin filament) muscle Z-line, alpha 2 | 3840 | 0.036 | 0.5361 | No |
52 | ANXA2 | ANXA2 Entrez,  Source | annexin A2 | 3949 | 0.034 | 0.5298 | No |
53 | FBLN2 | FBLN2 Entrez,  Source | fibulin 2 | 4053 | 0.032 | 0.5238 | No |
54 | APLP2 | APLP2 Entrez,  Source | amyloid beta (A4) precursor-like protein 2 | 4130 | 0.030 | 0.5197 | No |
55 | ELN | ELN Entrez,  Source | elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) | 4386 | 0.026 | 0.5019 | No |
56 | IGFBP5 | IGFBP5 Entrez,  Source | insulin-like growth factor binding protein 5 | 4507 | 0.023 | 0.4941 | No |
57 | LUM | LUM Entrez,  Source | lumican | 4533 | 0.023 | 0.4934 | No |
58 | SKP1A | SKP1A Entrez,  Source | S-phase kinase-associated protein 1A (p19A) | 4583 | 0.022 | 0.4910 | No |
59 | SERPINF1 | SERPINF1 Entrez,  Source | serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 | 4697 | 0.020 | 0.4835 | No |
60 | CCNG1 | CCNG1 Entrez,  Source | cyclin G1 | 4877 | 0.017 | 0.4710 | No |
61 | ACADM | ACADM Entrez,  Source | acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain | 4941 | 0.016 | 0.4671 | No |
62 | C3 | C3 Entrez,  Source | complement component 3 | 5333 | 0.010 | 0.4381 | No |
63 | RBP1 | RBP1 Entrez,  Source | retinol binding protein 1, cellular | 5430 | 0.008 | 0.4313 | No |
64 | CDC42 | CDC42 Entrez,  Source | cell division cycle 42 (GTP binding protein, 25kDa) | 5548 | 0.007 | 0.4228 | No |
65 | NID1 | NID1 Entrez,  Source | nidogen 1 | 5553 | 0.007 | 0.4229 | No |
66 | SCG2 | SCG2 Entrez,  Source | secretogranin II (chromogranin C) | 5614 | 0.005 | 0.4186 | No |
67 | CDKN1C | CDKN1C Entrez,  Source | cyclin-dependent kinase inhibitor 1C (p57, Kip2) | 5704 | 0.004 | 0.4121 | No |
68 | SMAD1 | SMAD1 Entrez,  Source | SMAD, mothers against DPP homolog 1 (Drosophila) | 5731 | 0.004 | 0.4104 | No |
69 | B2M | B2M Entrez,  Source | beta-2-microglobulin | 5795 | 0.003 | 0.4058 | No |
70 | DSTN | DSTN Entrez,  Source | destrin (actin depolymerizing factor) | 5815 | 0.003 | 0.4045 | No |
71 | SEPT2 | SEPT2 Entrez,  Source | septin 2 | 5877 | 0.002 | 0.4000 | No |
72 | CDO1 | CDO1 Entrez,  Source | cysteine dioxygenase, type I | 6103 | -0.002 | 0.3831 | No |
73 | LMNA | LMNA Entrez,  Source | lamin A/C | 6342 | -0.005 | 0.3654 | No |
74 | LYL1 | LYL1 Entrez,  Source | lymphoblastic leukemia derived sequence 1 | 6356 | -0.006 | 0.3647 | No |
75 | LAPTM5 | LAPTM5 Entrez,  Source | lysosomal associated multispanning membrane protein 5 | 6572 | -0.009 | 0.3490 | No |
76 | ANGPTL2 | ANGPTL2 Entrez,  Source | angiopoietin-like 2 | 6736 | -0.011 | 0.3373 | No |
77 | ITGB1 | ITGB1 Entrez,  Source | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | 6774 | -0.012 | 0.3351 | No |
78 | PMP22 | PMP22 Entrez,  Source | peripheral myelin protein 22 | 6796 | -0.012 | 0.3342 | No |
79 | EVL | EVL Entrez,  Source | Enah/Vasp-like | 6806 | -0.012 | 0.3342 | No |
80 | KITLG | KITLG Entrez,  Source | KIT ligand | 7033 | -0.016 | 0.3180 | No |
81 | CALM2 | CALM2 Entrez,  Source | calmodulin 2 (phosphorylase kinase, delta) | 7147 | -0.017 | 0.3104 | No |
82 | COL15A1 | COL15A1 Entrez,  Source | collagen, type XV, alpha 1 | 7379 | -0.021 | 0.2941 | No |
83 | RBBP7 | RBBP7 Entrez,  Source | retinoblastoma binding protein 7 | 7634 | -0.025 | 0.2763 | No |
84 | ITM2B | ITM2B Entrez,  Source | integral membrane protein 2B | 8067 | -0.032 | 0.2454 | No |
85 | CSRP1 | CSRP1 Entrez,  Source | cysteine and glycine-rich protein 1 | 8162 | -0.033 | 0.2402 | No |
86 | DNAJA1 | DNAJA1 Entrez,  Source | DnaJ (Hsp40) homolog, subfamily A, member 1 | 8213 | -0.034 | 0.2383 | No |
87 | HBA-A1 | 8316 | -0.036 | 0.2325 | No | ||
88 | LAPTM4A | LAPTM4A Entrez,  Source | lysosomal-associated protein transmembrane 4 alpha | 8436 | -0.038 | 0.2256 | No |
89 | TIMM22 | TIMM22 Entrez,  Source | translocase of inner mitochondrial membrane 22 homolog (yeast) | 8545 | -0.039 | 0.2197 | No |
90 | IGFBP4 | IGFBP4 Entrez,  Source | insulin-like growth factor binding protein 4 | 9082 | -0.049 | 0.1819 | No |
91 | ADIPOQ | ADIPOQ Entrez,  Source | adiponectin, C1Q and collagen domain containing | 9649 | -0.059 | 0.1423 | No |
92 | MORF4L1 | MORF4L1 Entrez,  Source | mortality factor 4 like 1 | 9926 | -0.065 | 0.1251 | No |
93 | RPS14 | RPS14 Entrez,  Source | ribosomal protein S14 | 10600 | -0.080 | 0.0786 | No |
94 | BAX | BAX Entrez,  Source | BCL2-associated X protein | 10615 | -0.080 | 0.0820 | No |
95 | PCNA | PCNA Entrez,  Source | proliferating cell nuclear antigen | 11131 | -0.094 | 0.0483 | No |
96 | BZW1 | BZW1 Entrez,  Source | basic leucine zipper and W2 domains 1 | 11133 | -0.094 | 0.0534 | No |
97 | CTSZ | CTSZ Entrez,  Source | cathepsin Z | 11497 | -0.106 | 0.0319 | No |
98 | CNN3 | CNN3 Entrez,  Source | calponin 3, acidic | 11628 | -0.110 | 0.0282 | No |
99 | GNB1 | GNB1 Entrez,  Source | guanine nucleotide binding protein (G protein), beta polypeptide 1 | 11712 | -0.114 | 0.0282 | No |
100 | ENPP2 | ENPP2 Entrez,  Source | ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) | 12368 | -0.147 | -0.0132 | No |
101 | CACYBP | CACYBP Entrez,  Source | calcyclin binding protein | 12647 | -0.168 | -0.0249 | No |
102 | ID2 | ID2 Entrez,  Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 12777 | -0.181 | -0.0246 | No |
103 | TUBB | TUBB Entrez,  Source | tubulin, beta | 12909 | -0.201 | -0.0234 | No |
104 | MCM7 | MCM7 Entrez,  Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 13021 | -0.223 | -0.0195 | No |
105 | UGDH | UGDH Entrez,  Source | UDP-glucose dehydrogenase | 13081 | -0.242 | -0.0105 | No |
106 | FMO1 | FMO1 Entrez,  Source | flavin containing monooxygenase 1 | 13123 | -0.259 | 0.0007 | No |
107 | CES3 | CES3 Entrez,  Source | carboxylesterase 3 (brain) | 13178 | -0.286 | 0.0124 | No |