Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | INFLAMMATORY_RESPONSE_PATHWAY |
| Enrichment Score (ES) | 0.7230054 |
| Normalized Enrichment Score (NES) | 1.9957232 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.0048712804 |
| FWER p-Value | 0.214 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | LAMC2 | LAMC2 Entrez, Source | laminin, gamma 2 | 19 | 0.791 | 0.2250 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 21 | 0.785 | 0.4497 | Yes |
| 3 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 252 | 0.342 | 0.5302 | Yes |
| 4 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 433 | 0.249 | 0.5881 | Yes |
| 5 | COL1A1 | COL1A1 Entrez, Source | collagen, type I, alpha 1 | 673 | 0.190 | 0.6247 | Yes |
| 6 | CD40 | CD40 Entrez, Source | CD40 molecule, TNF receptor superfamily member 5 | 758 | 0.176 | 0.6687 | Yes |
| 7 | VTN | VTN Entrez, Source | vitronectin | 1239 | 0.124 | 0.6683 | Yes |
| 8 | LAMA5 | LAMA5 Entrez, Source | laminin, alpha 5 | 1466 | 0.110 | 0.6827 | Yes |
| 9 | IFNG | IFNG Entrez, Source | interferon, gamma | 1653 | 0.100 | 0.6973 | Yes |
| 10 | IL2RB | IL2RB Entrez, Source | interleukin 2 receptor, beta | 1686 | 0.098 | 0.7230 | Yes |
| 11 | IL2RG | IL2RG Entrez, Source | interleukin 2 receptor, gamma (severe combined immunodeficiency) | 2582 | 0.065 | 0.6745 | No |
| 12 | FN1 | FN1 Entrez, Source | fibronectin 1 | 2715 | 0.062 | 0.6824 | No |
| 13 | IL5 | IL5 Entrez, Source | interleukin 5 (colony-stimulating factor, eosinophil) | 3140 | 0.051 | 0.6652 | No |
| 14 | IL5RA | IL5RA Entrez, Source | interleukin 5 receptor, alpha | 3305 | 0.047 | 0.6664 | No |
| 15 | IL4R | IL4R Entrez, Source | interleukin 4 receptor | 4494 | 0.024 | 0.5839 | No |
| 16 | TNFRSF1A | TNFRSF1A Entrez, Source | tumor necrosis factor receptor superfamily, member 1A | 4825 | 0.018 | 0.5643 | No |
| 17 | CD80 | CD80 Entrez, Source | CD80 molecule | 5469 | 0.008 | 0.5183 | No |
| 18 | IL2RA | IL2RA Entrez, Source | interleukin 2 receptor, alpha | 5995 | 0.000 | 0.4789 | No |
| 19 | CD86 | CD86 Entrez, Source | CD86 molecule | 6302 | -0.005 | 0.4572 | No |
| 20 | IL2 | IL2 Entrez, Source | interleukin 2 | 6369 | -0.006 | 0.4540 | No |
| 21 | CD40LG | CD40LG Entrez, Source | CD40 ligand (TNF superfamily, member 5, hyper-IgM syndrome) | 6517 | -0.008 | 0.4452 | No |
| 22 | IL4 | IL4 Entrez, Source | interleukin 4 | 11204 | -0.096 | 0.1208 | No |
| 23 | CD28 | CD28 Entrez, Source | CD28 molecule | 12234 | -0.138 | 0.0832 | No |
